| mature miRNA: TGAAGCTGCCAGCATGATCTG species: Citrus clementina database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|63065357|gb|CX296503.1|CX296503 C05141H11SK FerrChloL1 Citrus clementina cDNA clone C05141H11, mRNA sequence TGAAGCTGCCAGCATGATCTG EST sequence (targeted fragment marked with yellow): ACGCAAATGAAGAGAAACTAAGGCAAAAAAGAAAATTTCAGAGGTTGAAAACACGCCGATTCTATGACGAAGCTTATAATCATCGTGTCATATTCGTGCACTAGTAGTAGTTGAAGCTGCCAGCATGATCTGAACTTTCCTTGACCTCCATCTCTAGGGAAAGGCCAGATCATCTGGCAGTTTCACCTATTGATGGTAGCATGGCCAGAAACCCTAATTTCTTCTCCTCCACCAGATCGTTCTCAACAAACCCAGTAGGTTTTGGCAGATGAAAAACCCTAGAAACAGGTATCTTATGTTGTTTCATTTGATTTTTATTCATTCGGGTGGTTCATAATTTTACTGTATCTCTCAATACCCTTTTGTGCTTGTTGCAAATTCAATTGTACATGTTTATTTTTATAATATTTTTTTTATAATGTTTTTGGATCGTTCTGTTCATCCTTTGTATGTCAAGTTTTGTGATGAATCTAAT | |||||||||
gi|218787621|gb|FC873715.1|FC873715 KN0AAI3CG02FM1 AbsDev Citrus clementina cDNA clone KN0AAI3CG02, mRNA sequence TGAAGCTGCCAGCATGATCTG EST sequence (targeted fragment marked with yellow): AGGCAGAGGATCGGGCACAACAACAGCAACAGCCACAACAACACATGTATCATGATGCACTTCAGATTCGAACTGATGAGCTTCTGCAGAGGCAGCAGTCAAATCTGCCTTCACCATCATTTTCTAAAGCAAACTTCATGGACTCAAGCACGGAAATCTCAGTTTCTATCAGTCCTATGCAGAACATGCTGGGTTCCTTGCCTGAAGGGAGTGGCAATCTTTTGAACTTCTCAGGAGCTGGTCCATCTATGCTGAGGCAGCAGTTTCCCCAACAATCGTTGGGTTCTAAGTATGAACCTTCACAGGTCTATAAATCGGGTTCGGTTGGGCGCTCACTAGACATCTCCCGGTTCAGCAGCTATAATGAGCTGCGGGAAGAGCTGGGTCAGATGTTTGGAATTGAGGGGAAGTTTGAAGACCCTCTTAGATCAGGCTGGCAGCTTGTATTCGTCGACAGGGAGAATGACGTGCTTCTCCTTGGAGACGACCCATGGGAGTAAGTGACCGTCATGATTTTCCAGATTTTTTATTCAACTTAACTTGTGTGTTAAGATTTGTCTCCTACTGCTTGTTTTATGCTTGGTATACATCTGGTCAGGATTGCTAGCATCACTTCCTTTTATATGTAGATTTCGAAGTTCCAGACCATCAGATGAAAGCCCTTTGAGTTACTGAGATTGCATTTAACACGTGTCTTTATTAAGGTGCATCAATTATACCTGTCAAATACAATCTGTCAGTAAATTGCTAAATTTTGAAAAATATATAATCTGTCA | |||||||||