| mature miRNA: TTCCACAGCTTTCTTGAACTT species: Citrus clementina database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|218837588|gb|FC925936.1|FC925936 KN0AAP11YN10FM1 TF Citrus clementina cDNA clone KN0AAP11YN10, mRNA sequence TTCCACAGCTTTCTTGAACTT EST sequence (targeted fragment marked with yellow): TGATAAAACCCCTCTTTCCAAATCCAGCAGCTGGAGGACCGACGATGAGGTTATGGCTATGTTCCAGGCCTGGCTCGTGAAGCATGGCCAGGCTTATAACGCTTTGGGTGAAAAAGAGAAGAGGTTTGAGATCTTTAAGGAAAATCTTAGGTTTATTGATGAACATAACTCCGAGAACCGGACCTACAAGGTTGGGTTGAACCGGTTTGCTGATTTGACCCACGAGGAGTACCGGTCCATGCCTCTGGGTGCACGCTTTGGTGCTAAAAGGACTTCCTTGAAATCAAAGAGGAGCAACCGTTATCTGCCACGTGTCGGCGAGGCGTTGCCGGACTCTGTTGATTGGAGGAAGAAAGGAGCTGTCGCTGAAGTTAAAGATCAAGGAAGCTGTGGGAGTTGCTGGGCATTTTCCACCATTGCAGCTGTAGAGGGTATAAACAAGATTGTTACAGGTAGCCTGATCTCACTATCCGAGCAGGAGTTGGTGGATTGTGATACCTCATATAATGAAGGATGTAATGGTGGTTTGATGGACTATGCATTCGAGTTCATTATTGATAATGGAGGTATTGACCCAGAAGAAGATTACCCCCTACAAGCCATTGATGGTAGCTGTGACACATATCGGAAAAATGCCAAAGTAGTTACCATTGATGACTATGAAGATGTTCCCCCTAAATGACCAGAAA | |||||||||
gi|218839621|gb|FC931743.1|FC931743 C34108E03EF PostHarvP1 Citrus clementina cDNA clone C34108E03, mRNA sequence TTCCACAGCTTTCTTGAACTT EST sequence (targeted fragment marked with yellow): GACTCTGCCTCATAATCCATCTTCTTCTCCCAAAAAGAAAAAAAAAAGCTCTTTTCTCCAAAGATGGGTTTGTTCAGATCACCAACCATGGCCATGCTTTTACTTTTTCTCTTCACTGTATCATCTGCCTTGGACATGTCGATTGTATCTTATGATAAAACCCATGAGTCAAAATCTAGCAGCTGGAGGACCGACGATGAGGTTATGGGTATGTTCGAGGCCTGGTTTGTGAAGCATGGCAAGGCTTATAACGCTTTGGGTGAAAAAGAGAAAAGGTTTGAGATCTTTAAGGACAATCTTAGGTTTATTGATGAACATAACTCAGAGAACCGGACCTACAAGGTTGGGTTGAACCGGTTTGCTGATTTGACCAACGAGGAGTACCGGTCCATGTATCTGGGTGCACGCTTTGGTGCTAAAAGGACTTCCTTGAAATCAAAGAGGAGCGATCGTTATCTGCCACGTGTCGGCGAGGCGTTGCCGGACTCTGTTGATTGGAGGAAGAAAGGAGCTGTCGCTGAAGTTAAAGATCAAGGAAGCTGTGGGAGTTGCTGGGCATTTTCAACCATTGCTGCTGTAGAGGGTATAAACAAGATTGTTACAGGTAGCCTGATCTCACTATCCGAGCAGGAGTTGGTGGATTGTGATACATCATATAATGAAGGATGTAATGGTGGTTTGATGGACTATGCATTCGAGTTCATTATTGATATGGA | |||||||||
gi|218804845|gb|FC910114.1|FC910114 IC0AAA97CE05RM1 IVIA1 Citrus clementina cDNA clone IC0AAA97CE05, mRNA sequence TTCCACAGCTTTCTTGAACTT EST sequence (targeted fragment marked with yellow): AAAAAAAGTTCTTTTCTCAAAAGATGGGTTTGTTTAGATCACCAACCATGGCCATGTTTTTACTTTTTCTCTTCACTGTTTCATCTGCCTTGGACATGTCGATTGTATCTTATGATAAAACCCATGAGTCAAAATCTAGCAGCTGGAGGACCGACGATGAGGTTATGGCTATGTTCGAGGCCTGGCTCGTGAAGCATGGCAAGGCTTATAACGCTTTGGGTGAAAAAGAGAAGAGGTTTGAGATCTTTAAGGAAAATCTTAGGTTTATTGATGAACATAACTCAGAGAACCGGACCTACAAGGTTGGGTTGAACCGGTTTGCTGATTTGACCAACGAGGAGTACCGGTCCATGCATCTGGGTGCACGCTTTGGTGCTAAAAGGACTTCCTTGAAATCAAAGAGGAGCAACCGTTATCTGCCACGTGTCGGCGAGGCGTTGCCGGACTCTGTTGATTGGAGGAAGAAAGGAGCTGTCGCTGAAGTTAAAGATCAAGGAAGCTGTGGGAGTTGCTGGGCATTTTCGACCATTGCAGCTGTAGAGGGTATAAACAAGATTGTTACAGGTAGCCTGATCTCACTATCCGAGCAGGAGTTGGTGGATTGTGATACATCATATAATGAAGGATGTAATGGTGGTTTGATGGACTATGCATTCGAGTTCATTATTGATAATGGAGGTATTGACACAGAAGAAGATTACCCCTACAAAGCCATTGATGGTAGCTGTGACACATATCGGAAAAATGCCAAAGTAGTTTCAATTGATGACTA | |||||||||
gi|218830138|gb|FC931917.1|FC931917 C34202E12EF PostHarveN Citrus clementina cDNA clone C34202E12, mRNA sequence TTCCACAGCTTTCTTGAACTT EST sequence (targeted fragment marked with yellow): GGGAATAAAAATTTGGTTGCGCCAGTCGCATTCAAATTCGGAATTTATGATCGCGCGTCGTATCGGGCAGTCTCTCAGAACCGTGTGCCGATTTTCGCTCCGAAGAGTTGCCCCATTCTGTTTGTCTTCGTCTGACCACCCTAGGTTTTCGAGCGTTTACTCGGATGCTAAGCGAGGTGGGAGCGCGGTTTACAGACACGCGCTCAAGTTTCAGCGTCCAACGACGATAAAGTGGCAAGCTCAGTTAGAGAACTCTGTTAACTTTATCGGAACAGTGGTTCGCCCCCTTGAAAGAAGCAATGTATTTGGCGTTTACACACTCCTTCACGTCAAAAACTCCCATTCCGATCGCGGATTTGATATACTGCTGGCAGTGGGAGGCGACATGGCACAATTGTGTCAAAAACATCTGAAGCCGAATGATTTCATTTATGTTACAGGTCAACTACACTCTTACTCAAAGGTGGATAAGAATGGAAAGCTCTGCCTGCGTTACAAGGTGGTTGTGGAAGATTTGAATTATGTTAGAGAATGTGGTCAAGGACTCGCCTTCAAGAAATCTGTGGAATCAAAATCAAGAGGAGGAGAAGCTGGCATGGAAAAGTATGAAAACCGATTTTACTTGTGGCATTTGTACTTTGCCAACCCCTATGAATGGTGGGATAACAGAAAAAAAAGTCTCCCAGGAGCCCAGATTTTAGCACAGAGTACTG | |||||||||
gi|218833877|gb|FC908316.1|FC908316 IC0AAA29AG10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA29AG10, mRNA sequence TTCCACAGCTTTCTTGAACTT EST sequence (targeted fragment marked with yellow): TCTGGGTGCACGCTTTGGTGCTAAAAGGACTTCCTTGAAATCAAAGAGGAGCAACCGTTATCTGCCACGTGTCGGCGAGGCGTTGCCGGACTCTGTTGATTGGAGGAAGAAAGGAGCTGTCGCTGAAGTTAAAGATCAAGGAAGCTGTGGGAGTTGCTGGGCATTTTCAACCATTGCAGCTGTAGAGGGTATAAACAAGATTGTTACAGGTAGCCTGATCTCACTATCCGAGCAGGAGTTGGTGGATTGTGATACATCATATAATGAAGGATGTAATGGTGGTTTGATGGACTATGCATTCGAGTTCATTATTGATAATGGAGGTATTGACACAGAAGAAGATTACCCCTACAAAGCCATTGATGGTAGCTGTGACACATATCGGAAAAATGCCAAAGTAGTTACAATTGATGACTATGAAGATGTTCCCCTAAATGACGAGAAAGCTTTGCAAAAGGCAGTTGCAAATCAACCCGTGAGTGTTGCCATTGAAGGAGGTGGCATGGCATTCCAGTTATATGAATCGGGTATATTTACGGGAAGATGTGGGACATCTCTGGACCATGGTGTTACTGCTGTTGGATATGGCACAGAAAATGGAGCTGATTACTGGATTGTGAAGAATTCATGGGGCAGTAGCTGGGGAGAGGCTGGCTATATTAGGATGGAGCGTAACGTGGCTGGCACTCTCACGGGCAAGTGTGGAATTGCCATGGAGGCCTCATATCCCATAAAGAAAGGCCAAAATCCTCCCAACCCTGGACCGTCCCCTCCATCTCCAACAAAGCCTCCTGCTGTGTGTGACAATTATTACTCTTGCCCTGAGAGCAACACTTGCTGCTGTGTCTTTGAGTATGGTAACTCTTGCTTTGCATGGGGATGCTGCCCGCTTG | |||||||||
gi|218846630|gb|FC927146.1|FC927146 KN0AAP10YH03FM1 TF Citrus clementina cDNA clone KN0AAP10YH03, mRNA sequence TTCCACAGCTTTCTTGAACTT EST sequence (targeted fragment marked with yellow): GTTATTCTTTTCTTGATTTTGGCTTCGGCTACTAGCCTCCCTAGTGAACACTCCATCATTGGTCATGACTTTAATGAGTTTGTTTCAGAGGAGCGGGTATTCGAGTTATTTCAACGATGGAAAGATAAGCATGGCAAGGCGTACAAGCATACAGAAGAGGCAGAAAGGAGGTTCAGAAATTTTAAGAATAACTTGGAGTATGTTGTTGAAAAGAAAAATAATCCTGGTGGGCATGTTGTTGGGTTGAACAAGTTTGCTGACATGAGCAATGAGGAGTTTCGAGAAATTTATTTGAAAAAGATTCAAAAGCCTATTGGCAAAGCGATTGGTAATGCAAAGAGTAACTTGCACAAGACGGTACAATCATGCGAAGCACCATCGAGCTTGGATTGGAGGAAAAGGGGAATCGTTACTCCTGTTAAGGACCAAGGAAGCTGTGGAAGTTGTTGGTCGTTCTCTACGACTGGAGCCATTGAAGGAATAAATGCCTTGGTCACTGGAGACCTCATTAGCCTTTCGGAACAAGAACTCGTGGATTGTGATACCACAAGCTGTGGATGTGATGGAGGCTACATGGATTATGCATTTGAATGGGTTATTAACCACGGTGGAATCGACACCGAATCTGAT | |||||||||
gi|218847444|gb|FC885409.1|FC885409 IC0AAA94DH03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA94DH03, mRNA sequence TTCCACAGCTTTCTTGAACTT EST sequence (targeted fragment marked with yellow): AGAGTGGTCCTTGAAATAGCCTCTTTGTATGGGCTTCCTGCTTAATTCTTCCTCTCTAACATCGAGTGTAAAATGAATGGAAGATCATCAAGCCACAGATATGAGATCTGAACATTATTATTATTAAGTCCTGGTCATGCTTTTCCACAGCTTTCTTGAACTTCCACTGTTTGCTGATTAATACACGGCTCTTGCTAGCTAGGCGCCGTATGTAGACACCGCGCGCCATGGGAGCTCAAGAAAGCTGTGGGAGAACATGGCACACCTTCAGGATTTGCCTGCTCGCCAGATACCTCATCCTTTGGTATGCCGGCGGCCCTGCCAAGATCTTCCCCACGGTCTTCTTCCCGGTAATCAATTGTATATATTTTACCCTTAATTCCTATACAATTATAACTTTTTATATTTATTTATTACTTCTTAGAATTGTATACACAGTAACCCTCTTAAATTCTTGCATTATCCTGTGACAGAAGCGCTTCTTTAAGCTAGCTAGCTGTGACTGTGATTCATGTTCAAAATGTGAATTTTCTCATTTGACACTGACAACAAGGTTCCAAAATATACGTTCAAGAACAGATCAAAATCACCCTGCAACATGATTTTGTCTTTGTTTTTACACACACTCATTTTATATTTACTGTTTTAACACATGAGCTCCATTATGCATGGAGTGTGTGTGTAAAAACTATCCTAGTTTGCTGTAAATTTTTTATGTACAGTTTTTCTTCGCAAATAAATGGGTTTGTGTGATTGCGTTCTGTACATTCCATTAAAATGGTGAAAAATGTATATTTACTTTTGCAGGGAGGAGAATCCCCAGCTTTAATTGCTTTCTAATATTTTATCTGGAAAAATTT | |||||||||
gi|63065646|gb|CX296792.1|CX296792 C05802H04SK FerrChloL1 Citrus clementina cDNA clone C05802H04, mRNA sequence TTCCACAGCTTTCTTGAACTT EST sequence (targeted fragment marked with yellow): GAGCTGTCGCTGAAGTTAAGATCAAGGAAGCTGTGGGAGTTGCTGGGCATTTTCAACCATTGCAGCTGTAGAGGGTATAAACAAGATTGTTACAGGTAGCCTGATCTCACTATCCGAGCAGGAGTTGGTGGATTGTGATACATCATATAATGAAGGATGTAATGGTGGTTTGATGGACTATGCATTCGAGTTCATTATTGATAATGGAGGTATTGACACAGAAGAAGATTACCCCTACAAAGCCATTGATGGTAGCTGTGACACATATCGGAAAAATGCCAAAGTAGTTACAATTGATGACTATGAAGATGTTCCCCTAAATGACGAGAAAGCTTTGCAAAAGGCAGTTGCAAATCAACCCGTGAGTGTTGCCATTGAAGGAGGTGGCATGGCATTCCAGTTATATGAATCGGGTATATTTACGGGAAGATGTGGGACATCTCTGGACCATGGTGTTACTGCTGTTGGATATGGCACAGAAAATGGAGCTGATTACTGGATTGTGAAGAATTCATGGGGCAGTAGCTGGGGAGAGGCTGGCTATATTAGGATGGAGCGTAACGTGGCTGGCACTCTCACGGGCAAGTGTGGAATTGCCATGGAGGCCTCATATCCCATAAAGAAAGGCCAAAATCCTCCCAACCCTGGACCGTCCCCTCCATCTCCAACAAGCCTCCTGCTGTGTGTGACAATTATTACTCTTGCCCTGAGAGCACACTTGCTGCTGTGTCTTTGAGTATGGTACTCTTGCTTGC | |||||||||