| mature miRNA: CAGATAAAGATGAGAGAGAGA species: Citrus reticulata database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|188364093|gb|EY782745.1|EY782745 CR05-C1-103-093-E01-CT.F Mandarin leaf, infected with Xylella fastidiosa (stage 2 of 2) Citr CAGATAAAGATGAGAGAGAGA EST sequence (targeted fragment marked with yellow): GCGCGGAGGGAAGAGAGAAAANNAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCACGCGTCCGCCCAAATTCAAACTCTCACCGACTTGTATTTCAAAATCTTCGGACACCACACACTCACTCTCTTTATCTCTCTCACATCTTCATCTTTCAGATCAGAACTGTACTCCTAAACGACAACGTTGTTAAATCTGTCCATAAATTTAATTAAACCCTAGAAAACATTGGAAAAAAAAATTCAAAATCAATCCAGTTTTGTGGTAATGGCTAATGTGGAATCTGATTCAACTTCTTCAGTGCCAGTATCTGCTCCACTTGTACCTAAAAAGGAAAATATTACTCCTGTCGGCTCCAAAATTGCGGAATTAAATGAGTCGAGAGCAGAGTTGCTTAATAGAATTCAAGGCCTGAAACAGGATTTGCAAAACTGGAGATCGAAGCTAGATACTCAAGTCAAGATCTATCGTGATGAACTGACTGATATGAAGAAGACACTGAGTGTTGAAGTTGAGCAGCTTCGATCAGAATTTCAAGAATTGAGGAACACTCTTCAGCAACAACAAGATGATGTTACTGCTAGTCTCAGAAATCTGGGGTTGCAGGATTTCTCGGGAGATGACAAGGAAAGAAAAGAATGATCCAATATAAAACGGAAAAGATGAGGGAAGTTCATGGTATTGGCTACCCCTGGGGCAGGATAATGGGTACGGCGGAAGCAAACGTCGAGCGGTGGTGCACTGCGGACAAGGCAGTACCGGATGGAATGCCCGACGACCCACCGGCCGCCGCCGGCTCAAGACCTGAACAGGAAAGANAGGAGGAAAGAAGCAGCGCGAATGCACAGGAGAGCGAAAGACGGATCAACAGAGGGACACAAAACCACAACGCAACGAACAAACAGCACACCAGAACCAGAAGCTACGTCCACGCACCGAGCGACCCGCAGACCACGCCGCAGACAGCGGAGAAAGAACNCAAAAAAACGAGTGATAACAAGGCCCGCACGAGCCCTCCCGACACACGACACACAACCNAGAGGGAGA | |||||||||
gi|188367923|gb|EY788020.1|EY788020 CR05-C3-700-103-E08-CT.F Mandarin fruit, development stadium (1 of 3) Citrus reticulata cDNA CAGATAAAGATGAGAGAGAGA EST sequence (targeted fragment marked with yellow): CACGCGTCCGCTCCAGCAACAATCTTTCTTCGATCAGTCTTCGGCAGAGAGTAAGATATGGGATCAGGTCCATGGATAATGGATATAATGTCAGTATGAGGAATGATTCGTTCTCCATACACAATGACAATGTGCCTGACACGGGATGTCTTTCATTTATCGTACTTGGTGCTTCTGGACATCTTGCCAAGACAAACACTTGCCCTGCTCTCTTCCATCTTTATCGGCCGGGGTATTGACCAGTCATTGATCTTCACATATGTGGCTATGCAAAGACTACTATTTCGGATGATGAGCTGAGAGATCGCATCCGTGGATATCTTATCGATGATCAAATGCGCTCTGGACAATCAGAGCGGCTATCAGAGTCTGTGCAGCTGATTAGCTATGTCAGTGGTTCTTATGACACCGACGATGGCTTCCCATTTGCTGGACAGGGAGTTTCTGCACATCACTCATCGATATACACGTTGGAAGGATCATCTCGTAGACTCATCTATTGTGCCTTCCACCGGTCTGTATATCGATCTGTTTCCAGGATTATTACGTAGGTGCTGCATGAATACATCTGATCCTTGGTGGCTGGACTCCTATTGTTGTTCAAATGCAGTTAGCCAGGGATTTGGACCTGTCATGAGAACTTTATTGCCCACAATGGGGAAATTGTTAAACAACCCCCGCTTTTCCCGGATGGATTCTAATTTGGGAAAGGGACCTGTTCCCGAAATTGTTGGGTACTAACCCTTGCC | |||||||||
gi|188421913|gb|EY791767.1|EY791767 CR05-C3-700-135-E08-CT.F Mandarin fruit, development stadium (1 of 3) Citrus reticulata cDNA CAGATAAAGATGAGAGAGAGA EST sequence (targeted fragment marked with yellow): GGCGGGTCCGGGTTCCGGATTCCCGGGTCGACCACGCGTCCGATTTTGACCACAGCTGTGCCTGTGAGAGCTCCACTCCGACAGAGAACGTAAGTTGAAGGATCACGAGAGAACGAGTTACAGACTCGGTGAGTCAGAAAGTGCTTCATCACTTTTACTGCTGGGTAAGGTTTTAATCATTAAGCTCTAATTGTCATTTCATTTTATTTTTTAAAAAAATTTCTTTCCTAGATACCCAAATGCTTTGTTTTTTTTTTTTCCTGAAATTTTCTTGTTGGGACACTTTGATGATCGAATGAAATGATTGTTATTGACTGTTTGTTTTGTACATTTAGCATTTAAAATATATTTCATTTCTTGGTAATACGTCGAGTCTTTTATATATCTCTCTTTTATTTTTATTTTTTTGGAAGGGTTTGGTGATTTTGATTTTTTGATATGGTTTGCTTTGAATTAGTTTGAAGATAAAGGGACATCCAGGGAAAAAAAAGCTAAAAATGTATGACTTTCAAATGCTAAAAATGTATGGCTTTCAAAGACAATGTGCAAGTTATAGAAATTGGGTTTTCATGTGGGCAAATGGATGGTCAAATTATAGTGTATGAATGAAATGCTAGATACAAATCATGAATGATCCTTGTTTAATGAAATGCCAGATACGGATCATGGGGATCCTTGTTAAGGCCTAAATAACCTTTTGATTTTCCATGGGGGAAAATATAAGGGTGCAAAATTTTAAAATTTTTAATTCATAAGCTTTTTTTTACCCCCCTTAAAAAAGGAACCAATGGTAAAAAAAAATAAAGTAAAAATTATTTTTTTTCCCATAAAATTTGAGAAAATTTATTGCTTTTAAAAAAATTTTCCCCGGGGGGTGGGGAAAGGGAAATTGTTGGAATTCCCCCACCGGGGAATTTTTTTAACAT | |||||||||
gi|188410632|gb|EY784113.1|EY784113 CR05-C3-700-048-E07-CT.F Mandarin fruit, development stadium (1 of 3) Citrus reticulata cDNA CAGATAAAGAT-GAGAGAGAGA EST sequence (targeted fragment marked with yellow): CACGCGTCCGCGGACGCGTGGGCGGACGCGTGGGGAATCAAAGTTTCGAGTGCAAAAGGAAATTTTGAAGTTTCTGGCTGGTCAGGGTTTGTGCTCTGCATCTCTTGGCACTGAAGTGACATCTTTTGAGTTACAGGAGAAATTTCGCTGGCCTAAATCAGCGACCTCGAGTGCTCTTTGCAGGATGTGCATTGAGCAGCTTCAGCAATTGCTGGCAAATGCTCAGAATGTTGATGGGTCACATTCCTTGGCAAATGGACTGGAGCCAAGTGATCTTGGATCTTACTTCATGAGGTTTCTGAGCACATTACGCTACATTCCCTCAGTTTCTCTCTTTCGATCTTTATGTGATGAGGACGAACAGGCATTCAATAAATTGCAAGAAATGGAAACTAGGATTGCTATAGAGGAAAGGAATAGTGGGCTCAACGCGGATGCGGATAAATTGCATGCACTTAGATACTTGCTTATCCAGTTGCTGCTCCAAGTGCTCCTTCGACCAGAGGAATTCTCCGAAGCTGCCTCTGATCTTGTCATGTGTTGTAAGAAAGCTTTTGCAACTTCTGATCTTCTTAACTCCTCTGGTGAAGATGAGTCAGATGGTGATTCTACACCGGAGTTGATGGATGTCTTGGGTGGATACATTGATGTCATTGCTGCCGCAGTCATCAGCTCCTGTGCGGGTCTGCATTGAGCAGGGATTTCAGATATCTCGGTGATAATGTTACGGACCATGGACTCATGCGGGATGTCATCGAGTAAGTGGGAAAGGATTTGAAACCAGGGTGGAACATCCCCCAGGCCGGAACAGTGAACGAGG | |||||||||
gi|188344930|gb|EY796530.1|EY796530 CR05-C3-701-041-C06-CT.F Mandarin fruit, development stadium (2 of 3) Citrus reticulata cDNA CAGATAAAGATGAGAGAGAGA EST sequence (targeted fragment marked with yellow): CTTANAGTTCTCACCTTTGACTGTTTAGTTGCACTGAGATGGCTTTTCTTCTATTCCATGTCATCTAACGTCTTATAATTTTGGGAGCTTTTTCATGTGTTGGACGCTATCAGAAGCTTGTGACTCCTTGATTCATATCCATATACCTATGGGTATGTAAAAGAAATGACCAGCATTAAACTAAATTGATAACTTCATTTGTGGTAATTGTTGTCCCAAAACTTCTAGATGGTGTTTTTTTTTCCCCTCTCTCTCTCATATTTATCTCTCTATTCCTGGATTTACTTAAAACTGAGTGAGACTTTACAACACATGTTAGTGGTATTCTCCTCAGTCTTTGACCCTTCATTGAAAATATGTTCTTTCTGCCACTAAATTCTAAATGCTAAGTCATTTGTTTTTCTATTTTAATTTTTCATTGCATATCATCTCTATCTGGCCTGTTCTATATTTACTTAATCTGAATATTCTTCTTTTTCAACATGTCATGCTACTTACGCCATTGCAATATTGATACGTCGATAACTATGCATATGAAATTTTTTGGCAGGGCTCCATCTGTTTTTAACATTCTTTTATAACTATTGCGTGATTCCTCCCATTTTAAAATCAGGATACGGGCTGCTGCTGCCTTGGCTGTGCCATCCTCAGTTTCTGATAATGGAAATCTTTTCCAAAGTTGGTCCAGGGGGTGGACATATTCTGGGAAAATTTAGGGGGAAAACTTCTTTTCCCCCCCTCCAATTTCAAAAAATAAAAGTGGCCTTTCAAAAAAATTTAACCCCCCCCCTGTGGCCCGTTTTTTACCCTTGTCTTCAACCCCTGTACTTTAACCCTCTCAAAAAA | |||||||||
gi|188357145|gb|EY788436.1|EY788436 CR05-C3-700-101-F10-CT.F Mandarin fruit, development stadium (1 of 3) Citrus reticulata cDNA CAGATAAAGATGAGAGAGAGA EST sequence (targeted fragment marked with yellow): CCACGCGTCCGGCAAATCTCTTCAATAGGATACTTAATGCCTACTCAAAAGTTCCTCCAAAGCCAAAAGTATCATCAAACAAAAGTGAGTTTGAGGAACTTGAAGCAGTTCCAACCCTATCTGTGATGGAAGGCCCTTTGGAGCCAACATCGATTACCACTACTGCCGCTGATGCTCCCGAAGATCCATCATTTGAAAACTATTTTAGTACGGCTACAAGTATTGGAAGTAATGCTCCAAATGCTCCTAGTTTAAGACAGCCCTATCATTCTTCTGCAACCATTCCTTTGTTGCCCCATGCACCTATTGTTATTTCCTCTGCTGCACCAGCTCCACAAGCACCATCCCTCACTCTTTCATCTTCATCTACTCCCATTGCCATCCATGACACTCCTGATCCAATCAGCAGCAGCAATCGGGTCACTAACCTTGTGAAGCCTTCATTCTTTTCACCCCCATCTGCCTCATCTACATTGATGATGCCTCCTATCTCTTCATCTGTGCCAACTGCGCCAGCTCTTAATCCTCCCCTAAGTCTGCAACGCCCATATGGAGCTCCAATGCTCCAACCATTTCCCCCACCAACTCCACCTCCATCTCTAACACCTAGTTCCGCTCCTCCAATTGATAGACCTCTTATTACCAGAGAGAAAGTTCGTGATGCACTTCTGATGCTTGTTCAGGATGATNCATTTATCGACCAGGTTTATCCAACACTGATGAAGGTGGCCCATTCATGAACACTGTTAGTCACTTATAACTTTCGCTTGGGGGATGTCCCCCGGGTACTAAAATGCTGGTTAGATCGTCTTCTGTACGGCTCATCCGCCGGAGACCT | |||||||||
gi|188318081|gb|EY773413.1|EY773413 CR05-C1-102-085-B01-CT.F Mandarin leaf, infected with Xylella fastidiosa (stage 1 of 2) Citr CAGATAAAGATGAGAGAGAGA EST sequence (targeted fragment marked with yellow): CTTAATTTTTTTTTTTATTTCTCTTTTATTTTTATTTTGGTTTCAATTTCAATGGCTAATACGCGCTGGTTCAACGAGACTATCTTACATAACATTCAAAACAAAGCATGCAAATCTTTATTCAATAACCCTCGTTACAATTCTCTGCACAATCTTTTACCTCGCGGGCATGTGGCAGCACTCGCCGGGGGCCATCCGCGCTGCCACGTCACCTTCTTCTATACTCACTTTTGTCCCATGCAGCAGCACATCGGCCAAGGCCTCAACAAACCTCAACCTCGACTTCTCAGCCCACCACCAGGCTCCTGACCCCCCTCCCACTTTGGCGCGTGTCACCTACATCCCTCCCTGCGACCCCAAATACGTCGAGAACGTCCCCTGCGAGGAACCTCACCGGTCATTGAAATTCGACAGGGGAACAGGTTGATATACAGGGAGAGGCACTGCCCTGGAGAAAAACCGAGTTGCTTCAAGTGGCCGCGTGGCCGGCGCCGCCCGGTTAAACGGGGGCAATTTAAGAGGGCCCGAAAAAACAGAATTTTTGCTGGGCCGCCTAATGCCGCCCCCACAGCAGTCACACAACGCAAAACAAAAACCAAAATTGGACCCCGCCCTCCGAGCAGGGCCGGCGACCAGTCCCGACGCGTAGGGGGACGCGCGCCCAGCAACCAACCCACACCAACCAAAAACAACCACACCCCAACGACCCACGCACGGGAAGAACACGGCCGGGCCACATGCGGCAACCTCGACCGACGCTACACGACCTCACAGAGCCAAGCGCGCGTGCAGTCACAGCAGGAAGACATCAGCGCCAGCCGCAGAAATCACCCCGAACCCCAGCAACACACGGACACCCAGATGGACGGGCCCCCCCGGTTGTCCTCGCCGGCCCACGCGCCCACGCACGCCCATGACCCT | |||||||||