| mature miRNA: TCGGACCAGGCTTCATTCCCT species: Citrus reticulata database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|188235370|gb|EY780824.1|EY780824 CR05-C1-103-068-B08-CT.F Mandarin leaf, infected with Xylella fastidiosa (stage 2 of 2) Citr TCGGACCAGGCTTCATTCCCT EST sequence (targeted fragment marked with yellow): CAGGTGGTGAAGCGGTCGCCAATATTCTCTACGGATCCCCAAACTCGAGATTTTATGATGAGGCGTTTCTTGCCTGCAGCTAAGGCAATGGCTTTGGAGCCACCTCAGTATGCTTCAAGGAAGCAACCTGTCACAATTGAGCAACCAAGACAGGTTATTAAGGTGGTTAGTGAAGATCGGAGACCTCTTGTTAATAAATCTATTTTCATACCTCATTATGGGGAGCATGTAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAACTGAAGATGAAGTCGATGAGTATGACGATTCTGGCAATTTATCCGGAAAAGCTTGTGGGCTGCTTCCTCGGTTATGCCTTAATAAGTCTTTGTGCCTCTTAAATCCAATGCCAGGGTTGAAAGCTAGAACCCACTCTTCAGTCTCTTCCAGCTCTGATGTCAGAAACTTGGGCAAAGCTGCTTATACTGAATCTCGTAACCAAACAGTGAAGAAGCCTGGTCCGGGGATGCTGTTTATAAAGCATCAAGCAGAGAGTGGAGTTCAGTCACCAAAGCTACTGGGGAATGAAAAAAAAAGACCCGGTGGCTCTAAACCAGTTTGGCTTTGCTTTAAGGGACATCAAAAGGGCAGGCAGGGCATCTCCTTTCAGGGGCGGGATTTCTCCCTATCGTAATGGAAAGGCCTCAGCCTCCATTTCCTGGGAGGAGGGTTTCCTTGGTGGGCCCCCAAAAAACTTAAAAAATGGGGAACCCCAAAATTTTAAATCCTTAAAACCAAAACCGGGAAAACAAGCCCCACGGAATTAATTCCCCCCCCTATAATTTTTATAAAAAAAAAGGTTTGGCTCCTTTTAAACCCCCCAC | |||||||||
gi|188360502|gb|EY790829.1|EY790829 CR05-C3-700-015-A09-CT.F Mandarin fruit, development stadium (1 of 3) Citrus reticulata cDNA TCGGACCAGGCTTCATTCCCT EST sequence (targeted fragment marked with yellow): CCACGCGTCCGGTTCGTTACACGGCGGAGCACCTGTAAGCTCTCGAGAGAGTCTATTCTGAGTGCCCCAAGCCCAGTTCTTTGCGTAGGCAACAGCTGATCCGTGAGTGCCCCATTCTTTCCAACATAGAGCCTAAACAGATCAAAGTTTGGTTTCAAAATCGAAGGTGTCGAGAGAAGCAGAGGAAAGAGGCTTCAAGACTCCAGACAGTGAATAGGAAATTAACAGCTATGAATAAACTGTTGATGGAGGAGAATGATCGGCTGCAGAAACAGGTGTCGCAGTTGGTGTGTGAAAATGGGTATATGAAGCAGCAATTGCGTACAGCACCTGCGACTACTGATGCGAGCTGTGACTCTGTGGTGACCACTCCTCAGCATTCACTGAGAGATGCCAATAACCCTGCTGGACTCCTTTCTATTGCAGAGGAGACCTTGGCAGAGTTCCTTTCAAAGGCTACAGGAACTGCTGTCGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGGATTCGGTTGGGATCTTTGCCATTTCCCAAAATTGGAGTGGAGTGGCAGCTCGAGCTTGCGGTCTCGTAAGTTTAGAACCTACTAAGATTGCCGAAATCCCTTAAAAATCCGTCCATCTTGGTTTTCGGGATTGGCGGGAACCTTGAAGGTGTCAAGAAGTTATCGGGCTGGGAGAGGCCGGGAAAAATAGAAGATTTTGGTAGCCGCCGGCCAAATTGAGCCAAAAAACTGATGGCACCCGCGCAGGGGTGTACAGTGAAAAGGTAAATAACAAGAAGAAGATTAAACAAATATGGGAGAGCATAGGGAGGGGCGTGCGAAAAGGACAGTCTAGAGGACACGGGAGGGAAGGAAAGGAAAACACACAAAAGAGAACCGAGGAGACTAAGTTAACGAAGAACTGGCACGAGCTAACGCAAGAAAAAAAGTAGGACCGGACGAGTCAAACAAAAATGTAGA | |||||||||
gi|188362602|gb|EY790861.1|EY790861 CR05-C3-700-015-D05-CT.F Mandarin fruit, development stadium (1 of 3) Citrus reticulata cDNA TCGGACCAGGCTTCATTCCCT EST sequence (targeted fragment marked with yellow): GTTACACGGCGGAGCAAGTGGAAGCTCTCGAGAGAGTCTATTCTGAGTGCCCCAAGCCCAGTTCTTTGCGTAGGCAACAGCTGATCCGTGAGTGCCCCATTCTTTCCAACATAGAGCCTAAACAGATCAAAGTTTGGTTTCAAAATCGAAGGTGTCGAGAGAAGCAGAGGAAAGAGGCTTCAAGACTCCAGACAGTGAATAGGAAATTAACAGCTATGAATAAACTGTTGATGGAGGAGAATGATCGGCTGCAGAAACAGGTGTCGCAGTTGGTGTGTGAAAATGGGTATATGAAGCAGCAATTGCGTACAGCACCTGCGACTACTGATGCGAGCTGTGACTCTGTGGTGACCACTCCTCAGCATTCACTGAGAGATGCCAATAACCCTGCTGGACTCCTTTCTATTGCAGAGGAGACCTTGGCAGAGTTCCTTTCAAAGGCTACAGGAACTGCTGTCGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTTGGGATCTTTGCCATTTCACAAAGTTGCAGTGGAGTGGCAGCTCGAGCTTGCGGTCTCGTAAGTTTAGAACCTACTAAGATTGCAGAGATCCTTAAAGATCGTCCATCTTGGTTTCGGGATTGCCGGAGCCTTGAAGTTTCACAATGTTTCCCGGCTGGGAATGGTGGAAACATTGGACTTTTTGTCCGCCGGGCATAGGCTCCACCTAACTCTTGGTCCTGGCCGGGATTTCTGGACTCCAAAAAAAAACTTACACCTTTTAAAAAAAGGGGAAGTTTGGGGGGCCTGGGAAAAGGGCCCTTTCTTGGGTTTCTGTGGGCGGGACCAAAATACCCACCAATAACTCGGCTACGATTTGGGGAGAAGGTGGAAGATGGCCCCCCAAAAGGAGTTGATTCTCAAAAATCCGCACATTTAATAAAAGCGGGGGGACA | |||||||||
gi|188245441|gb|EY791804.1|EY791804 CR05-C3-700-136-A04-CT.F Mandarin fruit, development stadium (1 of 3) Citrus reticulata cDNA TCGGACCAGGCTTCATTCCCT EST sequence (targeted fragment marked with yellow): AGAATTACGAGATCATGATGGCGGTGAGCTCGGGGGGCAGCAGGGACAGCAGGGACAGCGGCGGGCAGAAGATGATAATGGACAACGGGAAGTACGTTCGGTACACACCTGAACAAGTTGAAGCGCTTGAAAGGCTGTACCACGAGTGCCCAAAACCAAGCTCTATGCGCCGCCAGCAGCTCATCCGAGAGTGTCCTATTCTCTCTAACATCGAACCTAAGCAGATCAAAGTCTGGTTCCAAAACAGAAGGTGTCGGGAGAAGCAAAGGAAAGAAGCGTCTCGCCTTCAGGCTGTGAACAGAAAGCTGACGGCTATGAACAAGCTGTTGATGGAGGAAAATGATCGGCTGCAAAAGCAAGTGTCACAGCTGGTGTATGAGAACACTTTTTTCCGCCAGCAGACACAAAATGCCGCGACGCTGGCCACCACAGACACTAGTTGTGAATCAGTGGTGACGAGTGGTCAGCACCATTTGACTCCTCAGCAGCAGCATCAGCATCCACCAAGGGATGCTAGCCCTGCAGGACTTTTGTCGATTGCAGAAGAGACTTTAACAGAGTTTCTTTCAAAGGCCACTGGAACTGCTGTGGAGTGGGTCCAAATGCCCGGGAAGAAAGCCTGGTCCGGATTCCATTGGAATCGTTGCCATTTTCTCAGGGTGGCACGGGTTGGGAGCCCGCGCTTGGGGGCCTTGTGGGCCTAAAATCCTAAAAAAATCCCTGAAATCCCCCAAAAAAAGGCCCTCATGGGTTTCCTGGACGGTCCTATCTGGGGAAGGTTGAAAATGGGGCCGCCCCCGGGAAATATAGGGGAACCCTTTGAATTTGCTATAATTGGCCCCCTTCTTTGGCCCCCAAAAACCCTTTGGGTCCCACCTCCGG | |||||||||
gi|188357052|gb|EY772439.1|EY772439 CR05-C1-102-080-C12-CT.F Mandarin leaf, infected with Xylella fastidiosa (stage 1 of 2) Citr TCGGACCAGGCTTCATTCCCT EST sequence (targeted fragment marked with yellow): CCACGCGTCCGCAAACCCAGTTCAATTCGCCGCCAACAGCTAATTAGGGAGTGCCCAATTCTCTCTAACATTGAGCCAAAGCAAATCAAAGTTTGGTTCCAGAACAGAAGATGCAGAGAGAAGCAGAGGAAAGAAGCTTCCCGTCTTCAAGCTGTGAATAGAAAGCTGACAGCAATGAACAAGCTTTTGATGGAGGAGAATGATAGGTTGCAGAAGCAGGTGTCACAGCTGGTGTATGAGAATGGATACTTTCGCCAACATACCCAGAGTACAACGCTTGCAACCAAAGATACAAGCTGTGAATCGGTGGTGACCAGTGGTCAACACCATTTGACACCTCAGCATCCTCCAAGGGATGCTAGTCCTGCAGGGCTTTTGTCCATTGCAGAAGAGACTTTAACAGAGTTTCTTTCAAAGGCCACTGGAACTGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCGTTGGAATCGTTGCTATTTCTCATGGTTGCTCTGGAGTGGCAGCACGAGCCTGCGGCCTGGTGGGTTTAGAGCCTACTAGGGTTGCAGAAATCCTTAAAGATCGGCCGTCGTGGTTCCGCGATTGTCAAGCTGTGGAAATGCTGAATGTGCTGCCGACAGCTAATGGTGGAACCATTGAGCTGGCTGTACATGCANCTCTATGCACTGACAACTTTGGCGCCAGCTCCCCACTTCTGGGTGTTGCGCTATCCTTCTGGTAAAGAAAATGGCGCCTTGGGGTCGGGGAGAATCCCCTAGAATAAACAAAATGGCCCACCATGCCCCCCGGCGCCCATTTGTAAGACCGAGCACGGACCAATGGGGGACCGTTCCGCAGTTTGGAAAGGGGGGCACATCCTGACAGCTGGGGCGCTCACGCCTACAGCCTGCGACGCGTCGCGCGATGGCACCCCAGTAGTGGCCTTGGATG | |||||||||
gi|188463814|gb|EY785007.1|EY785007 CR05-C3-700-058-E11-CT.F Mandarin fruit, development stadium (1 of 3) Citrus reticulata cDNA TCGGACCAGGCTTCATTCCCT EST sequence (targeted fragment marked with yellow): CCACGCGTCCGAGTTTCTCACCTGTATAAGTTGCAACAGATCATCGACTAAGCCACAGGCCATGGCCAGTCACTCATCTCTTGCTCCCTCAGTAATCCAGGCCATCACTAAGATTCCATCCAAGACTACTCACTCTTATCCCACTCAATGCTCCACCAGGAGGCTGGATGTGGCTGAATTCGCTGGCCTACGATCAAATACATGCGCCACATACGCCACTGGTGCTAGAGATGCGTCCTACGTTGATGCTGTGACTGCTCAACTTACTCCTAAGGTTGCACCACGATCAGTTCCTGTAAACAAAGAAACGGTGGCCAAATTGAAGGTGGCAATGAATGGATTTGGACCTATTGGCACGAACTTCCTCCGATGCTGGCACGGGAGGAAAGACTCGGCCCTTGATGTTGTGGGATGTCACATCACCCTGGTGGCTGTCCGATTGGTTGACCGACTTCTACATATACCACTCCATTTGCTTGGGGGTTGGGAAGTGGAGGAAGTGGAGCCTGGTGCGGCCACGACGCCGCCCCGCCTGGGCGCTGCCTCGGGTGGGTGCGGGGGGGTGTCGGAGGGAGGGGGGGCGTCAGCCCGGGTCGCCCGGGCGCCCGGACCCGGCGCGACTTGCCAGTGCGGCCGTGGTCGGGGCGCCGGGGGGACCGCGCGGCCGGCGCCGGGCGCGCCCGTGGCGGGGCGGCTGGTTCTGTGGGCTGCGCGGCCTGCGGTGCGAGGGAATTTGTCCTAACCCTTCTCGACCCGACGGCGCACGCAGCACAACGCCGCCGGACGGCGGGGGGTGTTTTGGTGGGGTCTCCTGGCGTCGCGGAGCGGCCCCACCTGGTGGTGGGCGGGGTTGGGTGGGGTGGGGGGGTTTGTTT | |||||||||