| mature miRNA: TGAAGGGCCTTTCTAGAGCAC species: Citrus reticulata database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|188299781|gb|EY767489.1|EY767489 CR05-C1-102-018-H09-CT.F Mandarin leaf, infected with Xylella fastidiosa (stage 1 of 2) Citr TGAAGGGCCTTTCTAGAGCAC EST sequence (targeted fragment marked with yellow): CCACGCGTCCGGTTCCTTATGAATTATGATGACAAAGCTGACTAGATACACCAGATCTCCAGGACATTCTCTACTGGATGATACGAGGGTTCTAACTCTGAGAAAGACGATCTGATGCGGACAGTTTGGATTCAAGGTGACGACTTCCTTATGATGAGCAAGCTGAATAAAGATGCTAGATCTCGAGGAAATTCTCCCATGGATGAAGCGAGGGTTCTAACTCTCACTTTCGAAAAAGCTTATGCATATTCTTTCATGTGCTGTAGAAAGTCCCTTCACCCTCGGAAACGTCACCATGGACTGGAACTGGGAGCGAAGAAAGCGAGATCTGATGGTTGGCATTGAAGGTGGCAAGCTGCAGAAGAAAGATGACGTTTTCAAAGTTGAAGGGCCTTTCTAGAGCACTGGAATCCATTCATAATTAAGCTTGAAATCCCAAAACCCAAGGCTTTTTGTGCATATTTGCATAGACTTTGCAGTAAGATTAGCTTTATTTTCCCTTTTATACTTGAATCCATATAACATTTCAATGTTACAGCATAACTTTGGTGCCAGCATATGTAGATCTGTATACGCTGCGAATCCGGCTTTCCTGCAAAACTGGTGTGATTTTTTTTTTTAGTCATCTATAGGAAAAGGTGAAACAAGTGATGCTTAGGGTTGTTAAGCTGGCCTCAGGCAACCAAAAGTACCCTTGCAAAGCCCTAATTATCCCCCAATCCCGTTTTGTAGAGGTTCCCTCT | |||||||||
gi|188447306|gb|EY782830.1|EY782830 CR05-C1-103-094-D07-CT.F Mandarin leaf, infected with Xylella fastidiosa (stage 2 of 2) Citr TGAAGGGCCTTTCTAGAGCAC EST sequence (targeted fragment marked with yellow): CATTTATCTTTCAATTCTCCTTTGATCGATCATGGCTCCTGCTGCTTCCTATTGGCTTTTTAGCATCATCTGACTTGGTCTTGCTGTGTGTCAACCGCTAGAAACTGCTTCATTCAATGCTTACGTTGTTCATATGGGATAGATAGAATGGGATGAACCTCATCTGGTTCAGGATTCGCGCCATCAAATTCTTTCATATATTCTTGGAAGGTGATAACTAGCAGTTTCAATTTGACGTTAAAGAAACTGCTAACGAATCGGTTCTGTACATCTACAAGCATGGTTTTTCTGGATTTGCTGCAGTCTTAGCACGTTCTCAAACCAAGTTAGCAGCACATCTCCCTGGTGTTGACCATGTTGTACCAAATAGGATACTTATGTAGCACGCGACTATGAGCTGGGATTTTCTACATCTAAAGCCTAATGTTAAGAATGGAGTTCTTTCGAAAGGCCATTCAGGCACTGGATCAATAATGGGTGTCCTGGATACTGGCATATGGCCAGAGACTGAGAGTTTCATGCATGAGAATATGTGACATATTCCACCTCGATGGAATGGGATATGCCACGAATGAGAATGATTTATTCGACCCAATTGTAATAGGAAAATTGTAGGTGCACGTTTGCTATGTTAAAGGATATGAAGCTGAATTTTGAAAAGCTAAATTCATCCGACAGAATTGGAATTCTTTATCCCCCCCCTAAATGCTGAGAATCCCTTGGCAAATCATACATTCATCTTCTTGCCCCCTGGTGGGTGATGGTAAAAAATTGAAATCTTTTTTGGAATTAACCCCAAGGTTTGAAACGGAAGGGGGGGCCCCCCTTTGCTGGGGTTTCTTTTTATTTTTTACTTTTAGTGGGGACCCCTTGGGGGCCCCGCCGACTACACCGCGGCCT | |||||||||
gi|188306051|gb|EY795393.1|EY795393 CR05-C3-701-029-F09-CT.F Mandarin fruit, development stadium (2 of 3) Citrus reticulata cDNA TGAAGGGCCTTTCTAGAGCAC EST sequence (targeted fragment marked with yellow): CAAGATGAAAACTATGCCCTTATATTTGTTTATAATTTGAAGTTTGTATTTTTTTTTCTTTTGGAAGTAATTTCAGTTTTGAATTACGTTTCAATAATTGTTTTGAAGCAAAATAATTTTGAAATGTTAAAATCTTGTAATTGTATTCAATTTTGTGTGTGTGTACATTCAAAGTATGTTTTTCTCTTCTGATTCTCATAAAATTTGGGTTGCTTTTATGTCATTTCTTAACTAGATCTACACTCTCTGTGTTATGGGTGCAGGGTGAAGACGGTAGGGACGAAGAAAGAGGATGCCAACGGTTTGGATTCAAGGTGACGAGTTCCTTATGAGTTATGATGAGAAAGCTGAATAAAGAGACAAGATCTCCAGGAAATTCACTACTGGATGAAACGAGGGTTCTAACTCGAGGAAAGAGGATCTGATGCGGACGGTTTGGATTCAAGGTGACGAGTTCCTTATGATGAGCAAGCTGAAGAAAGAGGCAAGATCTCGAGGAAATTCAGCAATGGATGAAGCGAGGGTTCTAACTCTCACTTTCAAAAAAGCTTATGCATATTCCTTCATGTGCTGTAAAAAGTCCCTTCACCCTCCGAAACCGCACCATGGATTGGAACTGGGAGCGAAGAAAGCGAAATCTGATGGTTGGGATTTAAAGTGGCAAGCTTGCAAAAAAAAAATGACGTTTTCAAAAGTTGAAAGGGCCTTTCATAAACACTGGCAATTCCCTTCATAATTTAACCTTTGAAATCCCAAAACCCCAAGGTTTTTTTGTGGCATTTTTTGCCTAAAACTTTGGCCGGAAAAAATTACCTTTTTTCTCCCTTTTTTATACTTTAAACCCAT | |||||||||
gi|188439116|gb|EY767271.1|EY767271 CR05-C1-102-013-C03-CT.F Mandarin leaf, infected with Xylella fastidiosa (stage 1 of 2) Citr TGAAGGGCCTTTCTAGAGCAC EST sequence (targeted fragment marked with yellow): CCACGCGTCCGGTTCCTTATGAGTTATGATGAGAAAGCTGAATAAAGAGACAAGATCTCCAGGAAATTCACTACTGGATGAAACGAGGGTTCTAACTCGAGGAAAGAGGATCTGATGCGGACGGTTTGGATTCAAGGTGACGAGTTCCTTATGATGAGCAAGCTGAAGAAAGAGGCAAGATCTCGAGGAAATTCAGCAATGGATGAAGCGAGGGTTCTAACTCTCACTTTCAAAAAAGCTTATGCATATTCTTTCATGTGCTGTAGAAAGTCCCTTCACCCTCGGAAACGTCACCATGGACTGGAACTGGGAGCGAAGAAAGCGAGATCTGATGGTTGGCATTGAAGGTGGCAAGCTGCAGAAGAAAGATGACGTTTTCAAAGTTGAAGGGCCTTTCTAGAGCACTGGAATCCATTCATAATTAAGCTTGAAATCCCAAAACCCAAGGCTTTTTGTGCATATTTGCATAGACTTTGCAGTAAGATTAGCTTTATTTTCCCTTTTATACTTGAATCAATATAACATTTCAATGTTACAGCATAACTTTGGTGCAGCATATGTAGATCTGTATAGGCTGCGAATCAGGCTTTCTGCAAGACTGGGGTGATTTTTTTTTTAATCATCTATTAGGAGAAGGTGAAAACAGGGATGCTTGAGGTTGTTATAGCTGCGCTTGGCCGACCGAAAGGGTCATTTCAAAAGCCCTATTTATACTCAGAGTCCAATTATGCTAAGGCTCCACTTTTATGGGCATTATCTTGGCATTTCATTTTTATCATGGCCCCATTGGGATCTCGGTGACTGGGCCTGGTACTATGTTGCTGTTGGGGTTGGCTTTTGAACCGNGGGCTGGAATTGAGCTGGCTAGCGAATTTTGTGCGGACTCTAGAGTGGGGAGTTT | |||||||||
gi|188300705|gb|EY790074.1|EY790074 CR05-C3-700-132-A03-CT.F Mandarin fruit, development stadium (1 of 3) Citrus reticulata cDNA TGAAGGGCCTTTCTAGAGCAC EST sequence (targeted fragment marked with yellow): CCCACGCGTCCGCCCACGCGTCCGCAGCTCTCTGAAAGAAACAAAATGAGTACTCCTTTTGTAACTGCAATCTCCTTCCTTCTCCTTACCTTTTCCCAAAACCGCTTGTGGGACTCGCTGATCCTTTGGTTGATGTCCATGGCAACAAGGTCGAAGCATCCCGAGACTACTATTTGGTCTCAGCAATTCGAGGAGCAGGCGGTGGCGGCCTCACCCTCTTCAGGGGCAGAAACGAACTCTGCCCACTTGATGTTGTCCAACTAAGTTCCGACTCAGAAAGAGGAACCCGTTTAAGATTCTCAATGCATGATAAAACTAGTATTATCAATGAAGATGTGGATCTGAACGTGAGATTCTCCACAGAGACTCGCTGCAACGAACCAACAGTATGGAGAGTCGACAGCTATGATCCATCGAGAGGAAAATGGTTTATAACAACTGGTGGTGTTGAAGGAAACCCTGGAGCTCAAACTTTGAAAAAACTGGTTTAAGTTTGAGAGAATTGGAAGAGATCGACCTATGTACAAGATTGTTCACTGTCCTTCCGTTTGCAAATCCTGTGTATCTTTATGCCATGAGGTTGGGGTTTCTAACGATCATGGTCCACGTTTTGGCTCTCCCTATTGGGCGCGCCCCTTGGTGGTGTTCTTGTTCCCGGGTAAACCAAAGATCAGCCCCCTTGGGGGCTCTTGGAAGGCCCTTTGTATCTTTACCTCCAAAAAATAAGGATTCCGGGGCTAACCCTCCTTGACCGCTTTATACACTAAAAAAAAAAAAATGGCATTTTGGCTAACCTAAACCCGTGGGTACCTTTTTGAAACAAAAAAAAAAATCGGGGGAAAATTTTTTGGACTTTAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAGGGGGGGGGGGGCGCCCTCCTT | |||||||||