| mature miRNA: TTGGTGGTTTTTGCCTGCTTT species: Citrus reticulata database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|188319501|gb|EY780109.1|EY780109 CR05-C1-103-064-A11-CT.F Mandarin leaf, infected with Xylella fastidiosa (stage 2 of 2) Citr TTGGTGGTTTTTGCCTGCTTT EST sequence (targeted fragment marked with yellow): AATTTTAAGGGGCGTGACCGCAGTACGGTCGGGATTCCGGGTCGACCCACGCGTCCGATCACAGCCGTCCAATTCTCCCTATTCTAATGGCTGCTGCTGTACCGTTGAGCTTCAATGGCTCTGGTGCTGCAACCTCTGTCCCAAGCTCATCTTTCTTTGGCACCAGCTTGAAGAAGGTAAGCTCAAGGATCCCCCCATCCAAGGTCCCTTCTGCGAGCTTCAAGATTACTGCTGAAGTCGATGAGAACAAGCAGACCAAGAAGGACAGATGGAAGGGCCTTGCCTACGACGAATCTGATGACCAGCAAGACATCACCAGAGGAAAAGGTGCTGTGGACTCTCTGTTCCAAGCCCCCATGGGAACCGGAACTCACTATGCTGTCATGAGTTCTTATGACTACATCAGCCAAGGTCTCCGCACATACAACTTGGACAACACGATGGACGGTCTCTACATTGCCCCTGCTTTCATGGACAAGCTTGTTGTTCACATCAACAAAGAACTCCATGTCCCTGCCCAACATCAAGGTCCCTCTCTTCTTGGGTATAGGGGGAGGCAAGGGGAAAGGAAAACCATTCCAATGGAAGCTGGTTTTCGCCAAGATGGGCATCAAACCCAATTATAAGGATGGCCGGAAAAATGGAAAAGGGGAAAGGCGGGAAAAAACCGCTAAGTTGATTCAGGGAAAAGGAACCGGGGAGGAAACTTGAAATTTTTAGAAAAGGGAAAAAAGGGGGTGGCCCTCGGAACAAGTGAATTTTTAGGGGAGGGATTGGGGGCCGAAATGGGGGGGACCACACCCCTAACACTCCATTAACACCACCTATGGGGGTTTACCCTCCACCTCATCTAACAACTTTCTCTCGAAACACCCCCTCAGTGGGGCCCCCTCCCCCTCCCGGAAGAAACAAAAAAGAGAGAGAAAGAAAGAACCCCCCGCCGGCTCGACACAACTAACACATCCATCAGCGGGAA | |||||||||
gi|188443069|gb|EY805896.1|EY805896 CR05-C3-702-056-G01-CT.F Mandarin fruit, development stadium (3 of 3) Citrus reticulata cDNA TTGGTGGTTTTTGCCTGCTTT EST sequence (targeted fragment marked with yellow): ACTATTCACTCCAGTCAGGTCTTTACCCGAAGCTTGCAGATTTGTGTACAACGATGCAATATTTGTTAATGAAAGGGCCCGAAATGAGATTGTCTTGCTTTCTCGAAGCATTATGAGGTTGGATGCTCGTGCACGTCTAGACATGGCTATTCTTGGGCCTGATTTCCTCAGCTGGAGTGCTCGGGAAAAAGAACATACCGATAACATTTACCGAGATGTGAACCACCAGGATGAATGACGTCATCCTATACTGTACTATCTTGATAGATAAAGCCGAGTGTAGATTGAAGCATGCTGCTGATAAGCACTGGAGTGACGGGGCCTTGGAAGCTGATCTGCCCCGCGCTCCAGTTCGTGGCAACTGGTGGCGGAGTGGCTAATCCAATCACTGCCCGGGCGGGGGGGGCGCACACCCCCCCCCCAAGGACGAACACAAACCAGGCGAAAACAACCAAACACACACGGCCCCCCCCCCCCCCCACACCCGCCGGCCGGCCACGCACACACACGCCACCCCGCAGACAAAACCCTAGCAACACAACACCCCAAAACAGCCGCAGACAGAACCAAAACACAACAACAGTCAACACCGCGCACGCGAAGCACCACCCACCCCCCCATCGACCACCCCCCCGACCCGCCACCCACCACACAACCAACGAACCAACAACCAAAAAAAAGGCAGAGCCACACACAAAACAGCAGAGAAGGCACGACCGACGCACCGAAAACGGCCGAGACAGGGACCCCACGCGCCCCGCGCCCCCCGCAACACACACCAACCTCGCGGCGAGGCAAGCAGAGGCCAGACAAACCGACACGAACACCACAGGCACGCACGCCCGGCCGAAAGCACGAAGAACCAAACCGAGG | |||||||||
gi|188333412|gb|EY800244.1|EY800244 CR05-C3-701-093-G07-CT.F Mandarin fruit, development stadium (2 of 3) Citrus reticulata cDNA TTGGTGGTTTTTGCCTGCTTT EST sequence (targeted fragment marked with yellow): TGCAGACCCACGCGTCCGCAAACAGATATATAGCTTTGAAAACAACAAAATGAAGATTTCATTAGCAACAACACTCTCTTTCCTTATCCTTGCCTTGGCCTCAAACTCTTTGTTGGTCTTGGGCACCTCATCAGTTCCTGAACCTCTCCTTGATGTCCACGGCAACAAGGTCGAATCCACCCTTAAGTACTACATAGTCTCAGCCATCTGGGGAGCTGGCGGTGGTGGAGTTAGCCTACACGGTGGCAGAAACGGATATTGTCCGCTGGACGTTATCCAGTTACCTTCTGATATGCAAAATGGAATCGAATTAACTGTCACCGTATAACAATTCTACAATTGTCCGAGAATCCACTGATCTCAACTTGAGATTCTCAGTGTTGCTATCTGGACGTGACTATTGTAACGAACAACCGTTGTGGAAAGCTGATAATTATGACGCGGCATCACGCAAATGGTTTATAACAACCGGGGGAACTTGATGGGCACCCTTGGAGCTGAAACTTTGCCTAAATGGGGTCAACCGCCGAAACAACTGGCAAAATATCCCAAGACATATACAAAAATACAATCACTAGACCCATCCGCTTTAGACAAGCATCGAGGAAAAGACACCAACAACGAACAGAGGCGCAGACACACGAGCGCGCTGCCGCGAAGCAAACCGAGAGACGACGAGCAGCGAAGAGAAGAGCCACAACCACAGACGAGTGCACACGAAATAACCCAACCACGCGCAAACAGACAAGACGGAGGAGTACCAAAAAAACAGAACGAAAACCGAGCAAGGTAGACTAAGACCACCAACCGCGGCGGGATAAGACCGCCGACAGCAAGGAGAGGAGACAAAGCTAGAGACGAAGACTACTACAAAAAATGAATAAGATTCGGAAATAGGGGTAACGAGAGAAAAACAGAGAAAAAGCAG | |||||||||
gi|188365245|gb|EY802020.1|EY802020 CR05-C3-702-010-F07-CT.F Mandarin fruit, development stadium (3 of 3) Citrus reticulata cDNA TTGGTGGTTTTTGCCTGCTTT EST sequence (targeted fragment marked with yellow): CGGACGCGTGGGCGGACGCCCTTTTAAAGAAANANANATNNNANANAAGAAAANAANGAACCCTTATGGAGGGGNGAGNNANGAAGGNANANAAAGCCAAAAGGAGGGAAAAAAAACGAAGACANGAAAACGGAACAGCACAGACAAGCAANCACAAAAGCGGGCAAACACCACCAACAAGCAACAAACCGGAGCGCGGACCAACACAACCGANCAAAAAAACACCCAGCAACCCACGGACGCCGGAACAACAAAAACAAACCAAGACCGACGAAGACGACACGGCGGACGGCGCAGCAGGGAGCCAGAAACGAAGACCAGAACACAGGACGAAAACCAGGGCGCAGGGGCCACAAACCCAACGAAAGAAGCACACAAACACCGCAGCACCGAAAGCGAAAAACCGCAGCGGGGAAAAAACCCAACGAACAGAAACGGAGGAGAACGCAAGCAACAAAAAGACAAGAGACCAAGGGGCCAACCACAGAAAGAGCAGGGCAAGCGCAAAGAAAAAAACAAAGGCGCACAGAGCAACGAGAGCAACAAAGACAAAAANGGAAGCACGCAGAAACAAAAACACAACGGCNACACCCACACAACCAAAACAAAAACAAACCAAAACAAAACACAAAAAAAAAAAGAAAAAAAAAAACAAAACAAAACACCAAAAAACACCAGACCACCAAGCGGAGCAAGGACCGCGACCACACAACCGCCAAAGAACACCACCGCCGACCCCCACCCCAGAGACCCGGAACACNAGNCCAGAGACCACGGGACGACACACCGCAAAAGGAGACACGCCAACACCCAACAGGAAACCACGACACAACCAAAGACCCCACGAGGCACACACCGACGAGCAGNCACACCCAAAACCCACAACGCCAAAACCGAACACAAGAGCAAGCGGACAAAAGAAAAAGAAGCAAG | |||||||||
gi|188435432|gb|EY792008.1|EY792008 CR05-C3-700-060-E10-CT.F Mandarin fruit, development stadium (1 of 3) Citrus reticulata cDNA TTGGTGGTTTTTGCCTGCTTT EST sequence (targeted fragment marked with yellow): CCCGCGTCCGGCCAATGGGCCCTGCTGCCACCCCTTTAAGACCTGGATTTTTCCCAGATGACAAATCTCATACCTTTGGTGCAGATGCAACACGTGATAATGACTGGACATGCCCAAAATGTGGAAATATCAACTTTTCTTTTATGACTGTTTGTAACATGAGGAAATGTAATACGCCAAAGCCTGGATCCCAGGCGGCGAAATCTGACAAAAATTCAAAACAAAAGATGCCCGAGGGTAGCTGGAAGTGTGAGAAATGTAACAACATAAACTACCCATTTAGGACCAAATGCAACAGGCAGAATTGTGGAGCTGATAAACCTGCTGAGTCAAAGAAGTCTCTCTCACCAACTACAGAAGAAAATGAGCGGTGAGTACTAGGACATGTTTGAGGGTTGAGAAGGTCCAGGGTTTTCTTCCAGCATTGCTCAATATGGGTGTCTGAAAGTCAGTCTTGTCGTCCTCATGTTGCAGCGGTTGTCAAGTTACTCTACCTTCTCTTGATTCCTGTCAACTTGTTGTAATTAAATTTGATGGTATTTGTGGTCTTTATGGATTCTTTTGATACATAAAGTGTCGCCCAGCTATGTTCTGGGAAAAATTCCTACAGGTTGGGTTCTGAATTTCTATTAATTAAGGCTTTGGGACTTTTGGGAAATCCACTTCATCTGGTTTCTGTTTTGATTACCTTTAAAACTTTTAAAAAATGGTTTAGGGGCTTTCTGAAACCCAAAAAAAAAATAAAAAGGGGGGGCCCCGTTCTAAAAGGAATCCAATCTAAACATACCCCGGGCCAGGCCCCAAACCTAACCCCCTCCTAAAAGGGGCCACCTTAAATTTCCATTTTCCATGGGCCCCTTCGTTTTTAAAACCGTCCCGGGGAAGGGGGGAAAAAACCACCGAGGGATAAACCCCCAATTATAAAACACCCTCTGTGA | |||||||||