| mature miRNA: AAGCTCAGGAGGGATAGCGCC species: Citrus sinensis database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|188366578|gb|EY657406.1|EY657406 CS00-C1-100-092-F04-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequ AAGCTCAGGAGGGATAGCGCC EST sequence (targeted fragment marked with yellow): AACGAAACATGGGTTCCAATTTTTTCCCCTTTTCTTTGCTTGTATTATTCACTTGGGCTAATGCAGATACAGAGCTAAGGGCACTCATGGACATGAAAGCAGCTTTAGACCCAGAAGAGAGGTACCTGTCTTCATGGACCATCAATGGTGACCCATGTGATGGTTCATTTGAAGGAATAGCATGCAATGAGAAAGGACAGGTGGCTAATATTTCTTTGCAAGGGAAGGGTTTGAATGGGAAGGTATCTCCAGCCATTGCTGGGCTCAAGCATTTGACTGGGTTGTACTTGCATTACAACTCTTTGTATGGGCAGATACCGAGAGAAATAGCTAACTTGACTGAGCTTAGTGATCTCTACTTGAATGTGAACAATCTTTCTGGCGATATTCCTCCTGAGATCGGTTACATGGGTAGCTTGCAAGTGTTGCAGCTTTGTTATAACCAGTTAACAGGAAACATCCCCACACAGCTGGGGTCTTTGAAAAAGCTCATGGTCTTGCCCTGCCATCCAATCAACTAACGGGGGCATTCCCTGGGAATTTAGGGGGATTGGGGGAGTTAATGAGGTAAAATTTAAGCTTCAATCCCCCCCTTGGGTTCCATCCCCAAAAAGTTACCCAAAGGCCCCCCTACGGGAAATTCTAAAATTTTCAAAAAAAATACTCCTACCCGGGGAGGGGGGCCCCCCCCTTTTGAAAAAAAGGAAAGTGGGGAATTCCTGGGAAAAAAAAAATTTGGGAGATTTTGGGGGATTTGGGGGTTTTCCCCGCTTGTAAAAAATTTGACGGGGGTTTCCGGAAAAAACATCCCCCCCCGAAAAAAACTGGGACCCGGTGGGGGGGAGCCCCCCCCACCTCTCTTTCTCCAAAAAAAAAAAACCACTCCTCGAGAAAGAAAACAAAAGGGTGGAGTTTTTTTTGCCTTCGGTGCGCCCACCACAACCATTCAA | |||||||||
gi|188355016|gb|EY683118.1|EY683118 CS00-C1-650-043-D11-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRN AAGCTCAGGAGGGATAGCGCC EST sequence (targeted fragment marked with yellow): CCACGCGTCCGAACCTTGAGTTACTTCCGCTTCACGATAATCAGTTCATTGGAAAAATGTCTATTAACTTTAATAGCCTTAACAATCTGTCGGTTCTAATTTTGGGGAATAATCATTTGGGGAACAGGGCAGCTAATGATCTCGATTTTGTAACTGTTCTTGCAAACTGTAGCAAATTGGAAAATCTTGGTTTATATGACAATCAATTTGGAGGATTGCTTCCACATTCTTTGGCAAACCTCTCCAACACAATGACCACAATTGACATAGGGGGCAACTATTTCTCTGGCACTATACCTCCTGGGCTAGGAAATTTGGTCCATTTAAATTCAATTGCCATGGAGGGTAACCAATTAATTGGGACTGTTCCTCCTGAAATTGGTTGGCTTAAAAACTTGCAATCGTTATACCTGAATTCAAACTTCTTGCATGGTTACATTCCCTCCTCTCTAGGTAATCTAACAATGTTGACCTTGCTTGCATTAGAAATCAATAACATGCAAAGCACAATCCCCTCTTCCCTAGGAAATTGCACAAGTTTAATTAAGTTGACTCTGTCAAAAAATAAAATCGATGGTGTTTTTGCCCCACAAATTCTCAACGTAACACCCCTTTCACTTTTTCTAAATCAACCTGAAAACCTTTTCATTGGCTCCCCTTCCTTCTAAAATCCGCAAATTAAAAAACCCTCGTTCAATTTAAAAATATTCGGGAAAACCAATTTTTCGGGGAATTTTCCGGGGAATCCTAATGGCTTGGAAACAACTTTAAAAAATGGTTAAAAAGCC | |||||||||
gi|188318640|gb|EY747483.1|EY747483 CS00-C5-003-045-E11-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA se AAGCTCAGGAGGGATAGCGCC EST sequence (targeted fragment marked with yellow): AAATCTTTCTGGCGATATTCCTCCTGAGATCGGTTACATGGGTAGCTTGCAAGGTTTGTCCTGATTTTGTTGAATAATTATTTCAGATTTTTTAAATACTTCTCGTGTTGAAAGTGGAATGCGTGCAAAAAGTTCTGAACTCGGTTACTTGTTTCTTGTCTTTGCACGGTCTTAAATATTGCTGTTTAGATACTGAGAAAATATGACTTGACAGTGTTAGATCTCCAGGTTGGGTGTGAAAGTTGTAGAAATTTATATGCTCTGCATTTTACCACTCATTTTTGAACTCCTGCACTAATTTGCTGATTTTTGTTTTCTGCAGACGGATTGAAATTTGCTTTGGATTTTTTGCTTTCTAGTTTTAATTTGGTTTCTTTTCTTTACTACTATGAAACCAGGCCTGACCTTCCCTCGCCCACTACATCCCCTTCGGCGGCCCCACGAGAGCCAATTATTCCCGGATAGGCCACAGGACTGAGCGGAGCCAAGTGATTCCTCCACAAAATCCCGCTACAATGACAAGAGAACGAGACAACAACATACACCGTACCTAAGCACACATCTACGACCTCCCCCACTAGCCCACTCGCCAAGCCCACGTCCAGGCAAACTGATCCGCAATGAGCACGGCCCACACGAATCCCACGCACACCGCGGACCAGATGATATCCTCACCCACTAAACACTCGACCAACACCCCTACCAGACACACCTCCCACGCACCTCTCCCTCTCAACAACCACGCCCACACCCTACTACCGGATCCCCACACTCCAACACTCTTTTCACAACCCGCCCCAAGCACCGCCTCCATACAAACGCTTCACCGCCTTAAACCACAGCGACACCCCACCCACAATACCACACTTACACCAACTGGCATATCTTAGCACTGAACACAGCAACAACGTACAAACACCTCCTGT | |||||||||
gi|188254399|gb|EY721562.1|EY721562 CS00-C3-703-024-F09-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cD AAGCTCAGGAGGGATAGCGCC EST sequence (targeted fragment marked with yellow): ATGAGTTGGTGGAGCACTACTTATCCAAGAGCGGGTTCAATGTCCCGATGTGAGATTAATTAGGCTGGTACCTGTCGCTACGCAAAAGTTTGTTGCTGAGGTTGCTACTGATGCTCTTCAGCAATGCAAGGCAACGCAGGCACCACTGGTCAACGACAAAAGGGACAAGCAACAAAAGGATAAACGTTTGATATTAACAATGGAGGATCTCTCTAAAGCACTGCGTGAATATGGCCTGAACGTGAACCATCAGCACTATTTTGCTGATAACCCTTCAACCGGGATGGATCCTGCTTCACAACAACAGTGACCTGATGTCGAAGTGGTGCAACATGATCCAGTGCATCTATGTGTGATATGTTTCCGACACTGCTGGTGCTCTAGCTGGGCTGTTGACACCTTGCATACCGTTTGTTATCTGACAACACAACTCATTGATGTGGTTAGATACATATCTAGTATATGGCCCTCGCGCACTTCTTAGAGAGGGTCAGTCTGTTTTGTCAAACAGGGTGTGTTCCAATGTGTACGAGTGTGACATGTTGGAAGGACAATTAACATAGCGCTCGGTCCCCCCCCCCCCTCCGCCCGAACCTGAGCCCGCGAGCCCGGCGGGGGCCCCCGCGCGGGCGGCCCAGACGGCCGCCATCTACCCAGCAGGCGTTCTCCCTCCTCAGCTCTCGTCTCTCTGCTCCTCCACCCCGCACAAACCCTCTCTCCTTCGCCGCCTTTCCACCCTCTCTCAGTCCCCCCCCCCAATGCAACGCCCACTCCCAAACCACCGCAAACCGGCCCGCGGCGTGTCGAGGAGGGGGGCAAGGGCGAGACCCCACAACCACACCCGCA | |||||||||
gi|188449106|gb|EY679112.1|EY679112 CS00-C1-401-055-D02-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA se AAGCTCAGGAGGGATAGCGCC EST sequence (targeted fragment marked with yellow): CACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGAATCATTTGGGGAACAGGGCAGCTAATGATCTCGATTTTGTAACTGTTCTTGCAAACTGTAGCAAATTGGAAAATCTTGGTTTATATGACAATCAATTTGGAGGATTGCTTCCACATTCTTTGGCAAACCTCTCCAACACAGTGAGGGCGGTTGACATAGGGGGCAACTATTTCTCTGGCACTATACCTCCTGGGCTAGGAAATTTGGTCCATTTAAATTCAATTGCCATGGAGGGTAAACCAATTAATTGGGACTGTTCCTCCTGATATTGGTTGGCTTAAAAACTAGCATCGTTATACCTGAATTCAAACTTCTTGCATGGGTACTTTCCCTCCTACTCAAAGGTAAATCAAACAATGGTAACCTTGGGTGGGGTGGGGGGAGCAAAAACTTAGAAGGGAAAAACCCCTCTTCCCTGGGAAATATGGCAAGTTTAATTAATGATGAACCATGGTCAAAAAATAACTTCGATTGGTGTTTTTGCCCCAAGAATTCATTCGAGGTAAAAAGCCTTTTGTTTTTTCTATAATAGTCTGATAAACTTTCCAATGGATCCCTTTTCTATAGAAATTAGGCGACATAAAAATCTAAGTTCAATTAAAGATACGGAGGAATCTATTATCGGGGGGCATTACTGGGAGACGAAAAGCGTTGAATAACATAGAGAGCAGTAGAAATCGAACAAAATTATTATATATGTAAGCATCCAATAAATTTAAAATATCTTTAATAATAATAAAAAGTAATGAAGCGGAGAAGAGGAAGTGGTTCGGGGAAAAAGCGAGAAATAATTTTAGAGACAATGAGAGCAAAGGCAATACAAAATAA | |||||||||
gi|57934031|gb|CX674416.1|CX674416 UCRCS10_6C11_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Cit AAGCTCAGGAGGGATAGCGCC EST sequence (targeted fragment marked with yellow): TTTTTTTACCATTCAACCAGGAGGTTTCATTATAACAAATAGCAAATATCATCGTAGCCACCTTTATTGGATGATACAAACCCCCAGTGAACATTCTAATTATGCTCCAAGTCTCACACATACATTACTCGCATTTCATTAGCTAGATTTCAAACACCGCATAGCTTAGAACTAGTTCATGCATTGACCTTCGGCACCCATCCTGCAATCACGTATTGCTTTTCAGCCTTAGTCTTCTGAAAGGATTCCAGAGCAAAAAGCTTCTTCGTGTACCCATGGACATGAGCCAAGCTCTCAGGGACAGTCCACTGCTTGAAATGTTCAAGAGCTACCTGAAGGTGGTACAGCTTTGGTGCCAAGCTCAAATCTACAGCAGTGGCCTTCTCTCCAGCAATGAATGGACCTCCATGAGTCTTAAGATGCTCATCCAATGCTTTCAATTCCTCCAGCAAAGCTTGCTCTGTCCCATCATTTGGGTCCTTGCTCTTCAAGAAATTGACAAAAGATGGGAATATCTTTGATCCAACAGAGGCAAATTCAGGAGGATTAGTAAGAGAAGGCTCAGGATACTTCTCCTCAATAATTCTAACAATCACATCAGAGTCAGCCACCCACTTGTCATCAAACTTTACCACAGGTACTTTCCCTTCTGGGCTTATCTCCAAAAACCATTGAGGCTTGTCACTGATATTGATGAGGTGACGCTTGTATGGAACTTTCTTTTCCTCCAAAGTAAGCAAAGCTCTTTGGGAAAATGGGCAGTCCCCGAGAATATCAGGAGCGCCAACAGCGGCTTTCACACAAATCTCCACGGCCATTTTTGCCGTAGATAATCTTTACTGCTTCCACAAAACAAGCTCAAGCTCTCATTCTTCGAATCTATTCTTGAAGCTAAAATCTTCTATTTCTTGGTTTCTGGC | |||||||||
gi|57934511|gb|CX674842.1|CX674842 UCRCS10_9A10_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Cit AAGCTCAGGAGGGATAGCGCC EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTGACAAAATCCAATGGATTTAAATCATTTAATACCCGCAGGAGATATCCAGGAACTAAAGAGTAAATACCATTCAACCAGGAGGTTTCATTATAACAAATAGCAAATATCATTGTAGCTACCTTTATTGGATGATACAAACCCCCAGTGAACATTCTAATTATGCTCCAAGTCTCACACATACATTACTCGCATTTCATTAGCTAGATTTCAAACACCGCATAGCTTAGAACTAGTTCATGCATTGACCTTCGGCGCCCATCCTGCAATCACGTATTGCTTTTCAGCCTTAGTCTTCTGAAAGGATTCCAGGGCAAAAAGCTTCTTCATGTACCCATGGACATGAGCCAAGCTCTCAGGGACAGTCCACTGCTTGAAATGTTCAAGAGCTACCTGAAGGTGGTACAGCTTTGGTGCCAAGCTCAAATCTACAGCAGTGACCTTCTCCCCAGCAATGAATGGACCTCCATGGGTCTTAAGATGCTCATCCAATGCTTTCAATTCCTCCAGCAAAGCTTGCTCTGTCCCATCATTTGGGTCCTTGCTCTTCAAGAAATTGACAAAAGATGGGAATATCTTTGATCCAAGAGAGGCAAATTCAGGAGGATTGGTAAGAGAAGGCTCAGGATACTTCTCCTCAACAATTCTAACAATCACATCAGAGTCAGCCACCCACTTGTCATCAAACTTTACCACAGGTACTTTCCCTTCTGGGCTTATCTCCATAAACCATTGAGGCTTGTCACTGATATTGATCAGGTGACGCTTGTATGGAACTTTCTTTTCCTCCAAAGTAAGCAAAGCTCTTTGGGAAAATGGGCAGTCCCCGAGAATATCAGGAGCGCCAACAGCGGCTTTCACACAAATCTCCACGGC | |||||||||