| mature miRNA: ACTCTCCCTCAAGGGCTTCGC species: Citrus sinensis database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|188408230|gb|EY682337.1|EY682337 CS00-C1-650-031-G09-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRN ACTCTCCCTCAAGGGCTTCGC EST sequence (targeted fragment marked with yellow): GTTTTTTCTCGCCTCTTATCGGCTTTTGCCTTCTCCGCGGCTTTGTTGTTCTCTCTCAATCTCGCTCTTCCTCGTCTGCCTTCCATCCGTCTGTTCTTCGCCCGTTCTTTCCCAATTAAGCTCGCTAATTCTTCCAAAATCTCGAGGCCGCCTCTGCCTGTGTTTTGGTCAATCGGGTCGAGGCCCAAGCTAGAAAAGAGGGGAAATTCGGGTTGCTGGGTGCAAGTTTACAGCAATGGCGACGTTTATGAGGGAGAGTATCACAAGGGGAAATGTTCTGGGAGTGGTGTGTATTATTATTATCTGAGTGGCAGATATGAGGGTGACTGGGTCGATGGAAAATATGATGGATATGGAGTCGAGACTTGGGCCAGAGGGAGCCGATATAGAGGCCAATATAGGCAAGGCCTTAGGCATGGATTTGGGGTTTATAGGTTTTATACCGGAGATGTTTATGCAGGTGAGTGGTCTAATGGGCAGAGTCATGGATGTGGAGTTCATACTTGTGAGGATGGGAGCCGATATGTTGGCAAATTTAAGTGGGGGGGTAAAGCCATGGGCCTTGGCCATTTACCATTTCAAAAATGGGGCCCCATATGCTGGAAAAAATTTGGGGGAAAAAATGCAGGGAATTGGAGTTAATCAATTTAACAATGGGACACAGAAAAAAAGGACCAGGGAAAGAGGGAACAAAAAAGGGAGCATGATATGGGACCATTTCGTAAATAGGGGAAACACAAATCAGGACACCAAAGAACAAGAAATGTTCAGAAATAAAAAAAAAAG | |||||||||
gi|188342433|gb|EY685164.1|EY685164 CS00-C2-003-010-E11-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequ ACTCTCCCTCAAGGGCTTCGC EST sequence (targeted fragment marked with yellow): CGGACGCGTGGGCGGGATGAGAAAGAAGTTGCTTGGTGTATCAAAGATTTGAATTCCCCAGGTTTCCACCCTTCAATGGTCTCTCTCTGGGTAACAGACTCTTTTGAGAGGAAGGACATGGAAAGGGATCTTTTGGCTAAGCTGCTTGTGAATCTTGCTAAATCTCGGGAAGGCATGTTAAGTCAAGGCCAGCTCATCAAAGGGTTTGAATCTGTTCTCACTACTTTGGAGGATGCAGTAAATGATGCTCCAAGAGCAGCAGAATTTCTTGGCCGTATATTTGCCAAAGTTGTCGAAGAGAATGTGATTCCCTTGAGGGAGATTGGGAGGTCGTTACCCGACAGTGAAGAGGAACCTGGCCATCTTCACGAGAATCAGGCTTGCCCCCGACTGGGGGGGGGGGGGGGCAAACACCCTCAGACCGCACAACCGCCCACCCCCACTCCCCCGACCCCCCCACCGACCCCCGCCTCAACCCCGCCGCGCCCAAGACCCCCCGCAAAGCCACGCCCCCCGCACCAGCGACCACGCACAAGGCAGAGCGCCGGGGAGCAGGGCACCCGCCACGCGGTGCCGCCCCCCCGCCGGCACCACCGCGCCCCGATGCAGGGCCCCGCTGAGCGCAGCGGGCGCGCCCTCACGACAACACGAAGGACGGGGCATCCCCCGGGCAGGCAGCGACCCCGCGCACCCCGTGCGAGCAGCGGTCAAGCCGACCGGGCCCGCCACCGCCCACCCACCCGCACCCACCCCGCGCACGGCAGCAGAGCCGCGGCACCGAGCGCCCCACCGCCCCAACCCACGAGGCGCGCACAAGGGCGCGCAACGCCGCCACACCGGCGCACCCCGCACCCACGCCAGCCCACGCAGACCGCGCCCACCCCCCGGCACCCCGCCCCCACGCGCCCACCCACACGAGCAACAGC | |||||||||
gi|188316430|gb|EY747459.1|EY747459 CS00-C5-003-045-C07-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA se ACTCTCCCTCAAGGGCTTCGC EST sequence (targeted fragment marked with yellow): CCACGCGTCCGCCCTCGTCCTCTGCTACACCCATTAACGAACCATCCTGCCCTTCTCCGTGTCGACCGTGTTATTAGTACGGTACCATACCATGGAGGATCTATATCTTTTATTGTTTTGCTGATACTCCTCGCAGAATTTTCTCAGGATAGCCCTCTTCATCACCTCCTGATACTCCTGCACCTTCGCGCCGTTTCGATAATCCTCTACTTGATGCTCTTATCTATTGAGATATCTGCCTGCCGTTCCCGGCCAATGGGTCGTCGTCATACTGATAGGGAGGCACTAGGCGTGACCATAATGCTATTCCGATCTATTGGAGGGATGATCCTTCGAGTGTCCCTGAACGTCAACTGAGAAGGAAGGATGATGAGAGGGAATTACACAGGGATTCTGGTCTAACTCGCCTTGGTACAGGCGGTGATTCGGATAGACGTTCTGATCGTCAATCCTCCAGTAGTTTCCGCATAATTACTCTATCCATGATGACTATGTCAGACATGACCAGCGTGAAAATGATGACGATGGAAAACTATCGGAGGTTTATCCTCCTCGTTCTGGTCGAGATTCTCGGGATTCATAATAGGTCCAAAAAACTATTTGCGGCGGGGGGGGAGAAGTCCTTCCCGGTGATTAAGGCATGGATGGTTTTGGGGGGTGGGAAGCCTCGGATACGGGGAAGGAACGTCCGTTCTTGTAGGGGTGGAAAAATGAGCCATAAGTATTCTTTCCTCTGAAGGAGCGGGGGTCTTGGGGGAGAGTACTTGGACCGCGCTTTTCTCAAAAGCTGGGTGGATAGAGTGGCGTAGGACCGCGGACCCGGAAGTCGCGCCGCGCCCCGAGAGCGCCATTTCTCGGCCTGCGCGCTTGGGGTGATGCGTTGGAGCGTGCGGCCGACTCGTGTGCTTGCTGTCACCGAACGCGCCCGTGCGCCCCTCTGCGGTCGCCGCCCTGTACGCTTCGTGGCGACGAGCCGCTATTGGGTCACCTCTCTTTGCG | |||||||||
gi|188278774|gb|EY700778.1|EY700778 CS00-C3-700-098-H10-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cD ACTCTCCCTCAAGGGCTTCGC EST sequence (targeted fragment marked with yellow): CCACGCGTCCGCCCACGCGTCCGCAAAGCTCAGAGAGAGAGAGAGATAGAGAGAGAGAGAGAGAAGGAAGAGAGCTAGCGAGAGAAAGAGTGAGTGACTGAACGAAATGGAGAAGGAGAGAGAGCATCATGTTTACTTGGCCAGACTTGCTGAGCAAGCCGAGAGATACGACGAGATGGTTGAAGCCATGAAGAAAGTTGCCAAGTTGGATGTGGAACTGACTGTGGAGGAGAGGAATCTGGTGTCTGTTGGGTACGAGAATGTGATTGGGGCAAGAAGAGCATCATGGAGGATTTTGTCTTCCATTGAACAGAAGGAGGAGGCCAAGGGTAATGAACAAAATGTGAAGAGGATTNAGGAATATAGGCAGAGGGGTTGAAGATGAGCTTGCGAAGATCTGTAATGATATATTGTCAGTCATTGATGAACACCTAATCCCATCCTCCACATCTGGAGAATCAGCGGGGTTTACTATAAGATGAAAGGGGATTATTCCGGTACCTAGCTGAGTCCAGGGGTCTGATGATCGTTGGGGAGCCGGAGATTCTTCCCTTAGGGGTTACCGAGGGTGCTACAGGTTGCACCGCCTCCGGATTGCCCCCGGGTCGTCCGGTCGGACTGGGCCCGGGCCCGTTAGCTTTCCGGGGTGGCGCCTGTGAGAATTTGGACCCCCCCTGGAGAGGGCTTTCCCCCCTGCCTCAGCCACCCTTGGGGGGGGGGTGTGGGGGGACGTGAGGCGCTTGAGGGGGAGGGCCTGGCGGGGGCGGGCCCCTTGATTATGCGGAGTTCGTCCGGGGGGATCGCGGCCTGGGTGGGCCGCGGGTGTCCCGGGGGAGGGGGGGGGGGACCGCTCTAGGGGGGGGGGGGGCCGCCGCGAGGACCGG | |||||||||
gi|188343518|gb|EY734224.1|EY734224 CS00-C3-704-083-E10-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cD ACTCTCCCTCAAGGGCTTCGC EST sequence (targeted fragment marked with yellow): TTGCAGACCCACGCGTCCGTAAAGATTGAATACCAGAATACCTAAAAAGCCTTAACATATTGAAGATTGAAAATAATATTGTAATAGACGATCGAAGATCGAAGCTATTGAGGGAAAGTTGGCATCTGTTGAGGAGCTGGAACCATTTGTCAATCATGCATCTCAAATGGCTGCACTTGACTACATTGTATCTGTTGAAAGTGATGTGTTTATTCCATCATACTCAGGAAACATGGCAAGGGCAGTTGAAGGTCATCTGATGTTGAGGTTTTCAGGATTGAGCAAGACTATAGAAATAAATACAAGATTATAGTTGGTGATGGTTGACCCTTCGAGTAGTTTTTATTGTAAACTCTTTAGTCTTTTGAGTTTGACACAATGTTTTGGCTTTTTATATTTCAATGTTCATGTAGTTCTACACAATGTAATAAATTTTCAAATTATTCAATGAGTATTTTAATTCNNAAAAAAAAAAAAAAACAAAAAAAAAAAACAAAACAAAAAAAAAAANAANNAAAAAAAAAAAAAAANAAACAAAACAAAAACCAAAAAACAAAAACGCCCAAACAACCACCCAACCCCCCNCCAAACAACCGACACCCACCAAACACCCCCCCNCCAAGGCCGACCGGGGCGGGGGGCCCCCTCCACAGAAGGCCGCCACACCGACGAGGCGGGCGAGCGACCAACGGCCACGAACAACCGGCACAAGAGGGAGGAGGCGGGGGCGCCCCTACCCCAGGACGCGCCCGGAGGACAACAGGCGGCGCGCCGCCCAACACCACCCACTCAGACCGCCCCCCTCCCGCCACCGGGGG | |||||||||
gi|56583893|gb|CX069980.1|CX069980 UCRCS08_14A10_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis ACTCTCCCTCAAGGGCTTCGC EST sequence (targeted fragment marked with yellow): CTTCTTCCCAATCTGGCCAATCTAAACAGTCCAATTTGCCTTAATGATCTACAGTAGCGGCTGGAGATGAGTCTGGTTCTGCTGCTGCCCTTGCCAAGGGTTAGAAATGACCATCTTAGAATGACCTCTGCCGACTTTGACTCGAAACCCTTGGAGCTGGGTGCCAAGCTCTTGAGGGAGATTAGTGCCTACCGTAATGCAAAGGCTTTTCAATTTATGAAGAAACAAGAAGAGACAAAACAAGTAGAACAAGTAGAACTAGCTGCAAATGCTGCCGAATATAAGGGTTTGCAGGCCGAAGCCAAAAATTTAAAATGATTACTTCTTAACTACGATCCTTATTCGTGTCTGAGGTTCTTGAAGAATATATTTCTTGTTGTAGTGGCCTTAGAAGAATAAAATTTTTGAGTTGCACGAACTCGTCTATTTGTTTATTGAAGCTGAGGCTAATTTTTCAATTTAA | |||||||||
gi|188462134|gb|EY683367.1|EY683367 CS00-C1-650-049-D04-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRN ACTCTCCCTCAAGGGCTTCGC EST sequence (targeted fragment marked with yellow): AAGATTTCCATCCATGTTCCGCCTTCTCTGTGAGCCACCAACTCGTGCCCCAAGGGCCATGCCCAAAGATGGGGTGCATTACCACTTTACCGAGCGAAGTGTTATGGAGAAAGCAATAAAAGATGGTAAATTCCTTGAGTTTGCCTCTGTTCATGGAAATCTTTATGGAACCAGTGTTGAAGCTGTGGAGGCGGTAGCAGATGCTGGAAAGAGATGCATACTTGATATTGATGTTCAAGGGGCGAGGTCTGTGAGGGCGAGTCCTCTTGATGCTATTTTCATATTTATCTGTCCACCTTCAATGGAGGAGCTTGAGGAGCGCCTCCGTGCAAGAGGAACTGACACAGAGGATCAGATCCTAAAACGACTCAAAAATGCCAAGGAAGAGATTGAGCAAGGGAAATCCTCCGGCATCTTTGATCATATATTGTACAATGATAAACTTGAAGAGTGTTACCAGAACCTTAAAAAACTCTTGGGACTTGATGGGAGTATTGCTGCAACCCATCAAACCTCACCCAACGGGATTGATTTGCCAGCTGATCATTCAGCTATCAAAAAGCTGATAACAAACTCTTCAAAAATTGTGGGGGCTGCGGGAAAGGAAAAACCACAAAAACCTAATGGGTTCTGGGTGTAACCCTCCCTGATAGGGAGGAACACATGGATGGACTAAATGGGATTCAATTTAATACAACCTCAACCAATATACAGACTGGGTTACAGGGGGTAAAAAAGATTGAGCCAAGAGCCGCCCCATCGCCCGACGCACCGTAGCCGGGTTTCCCCACCATAGACGAATACCCGCCGCGCTCCCGCAC | |||||||||