miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: CCGGATCCGGATCCGGATGCA
species: Citrus sinensis
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|188438008|gb|EY668126.1|EY668126 CS00-C1-102-037-F07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2)

CCGGATCCGGATCCGGATGCA
|||| ||||||.|||||..|
GGCCAAGGCCTGGGCCTGTGA

EST sequence (targeted fragment marked with yellow):
GTTTTCTGGAGTTACCCTTTAGTTATTGATCCGGGTTCAAAACCCGGAATCCGGGACCTTGGATTTTTCCGGGTTGAACCCGGTCCGGACCCGCATGAGAAAAAGCCTGGTTTTAATCCGGGTCCGGAAACAAAAAAATAGTGTCCGGGTCCGGAACCGGGAAGGCTAAACCCGGACCCGGACCCGGATTTTGCCATCCCTAATCTCGATGGCTGCTCCAATGTATGTATGTGTGTGTGTGTGTGTATAACTACATGTAAAAATAAATGAAGGGCATTTTTGTTACATGTTAGACGATACACGTGTCACGATGAAGGCACGTCTCAATCGCGGCCACGTACTGGAAATAAATAAATAGTGACTCAAGAGCAGATGAGAGTGTGCAAAGTGTGAGCAAATTCATCTGGCCGCTACAAAGCAAGAAACGGCCTCGTAGCTCAGACGTTAACGCCGTCGTTTTGCTCTCCAAACCCTAAACGTGATTTTTCTTTTTTAGTTCATTTTAATCCTATTTTAATATTGGATCAAATCGTTCCTTCTTTATCCCAATGCCTCTTTGGTCTCTCGTGCTTCAACTTGCAAAAGAATCAGTACATCTCACCTTCGGGCGAAAATGGACTGGATGTTCTAAAAACCGTTTTCGTAGACGACACCTCAACAACACACTGCCTTAATTACGCCACCAGTTCACGGCCCCACCACACCCCCCACACCTCCTATTCATTCCTCCCTCCCTCGACTCTCTTAATGACGTCGCAGATTCCACTATCTAATTTACCTACACAATCTTCAACCATGAACTCTAAACTCGCATATGCCC



gi|188371137|gb|EY683776.1|EY683776 CS00-C1-650-040-E08-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRN

CCGGATCCGGATCCGGAT-GCA
| |||||||||||||||. |||
GCCCTAGGCCTAGGCCTGGCGT

EST sequence (targeted fragment marked with yellow):
TAGAGGGGGACTGCGGTCCGGATCCGGATCCCGGGTCGACCACGCGTCCGCTTGTTCCTGAAGAGAATTCCTTAGGTATTTGCAGTAGAGAACTGCTTGCCAGAGGCTGTGAGCTCCTCAAACGCACCCGCAAAGGGGATCTCCATTGGAAAATAGTTTCTGTTTATATCAACAGGTTGAACCAGGTTATGTTGAAGATGAAGAGCAGGCATGTTGCTGGGACCATCACAAAAAAGAAAAAGAATGTTGTATTGGAGGTGATCCCGGATATGCCTGCATGGCCAGGCCGCCACTTGCTTGAAGGCGGCGAGGACAGGAGGTACTTCGGGTTGAAGACCGTTTTGCGTGGAGTTGTAGAATTTGAGTGCCGAAGCCAGAGGGAGTACGATATATGGACTCAAGGCGTTGCAAGGCTACTGAATGTTGCTGCAGAAAGAAGCAATAGACATAGAATTTAAACTATTGTTTACATGAGCGGGATAATTTGGCAAATGGGAGGGGGATATGGGATTATTGGGGAGTTTAGGATCAAAAGCCCTTTTAACAAAGTATGAGATGTTTTAGTACCAAATGTTGGGCTGTTTTGCTTGGGTGTTTCTTGTTGTAAAAAAAGGTTTCAAATATTAATTAAAGATGAGTTATCCCAAGGGGTCCTCTTTGAGCTGCGGGGGGGAAATATTTTGTACTTTTTTGTAAGTTAATTTTTGAACTGGAAAAAGTAAAGTGATTTTGAATGAAACCAAAACATGAAAGGAAAAAATGGCCTGTGATGCCCGGGCCTTTGTTGTTTTACTGGTTTGGAAAAAAAAGGAATAACCTTGGAACTGAAATGGCCAAAAAATAAAATAAAAGGGAACCCCTTTTTGAAGGAAAAAAATAAAATTTTTGAAAAACAAAAACTACCCCCAAATGGGGTAAAAACCCACAAACCTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTGGGTGGGCCCGGAAGTGGCTTTTTTGTTCCTTTTTTTTTCCCCCTATTTTGAATATTT



gi|188341810|gb|EY739841.1|EY739841 CS00-C3-705-063-C08-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cD

CCGGATCCGGATCCGGATGCA
||||||||||||||.||| |
GGCCTAGGCCTAGGTCTAGGC

EST sequence (targeted fragment marked with yellow):
CCCACGCGCCCACGCGCATCCCCCAAACACAGATTCCACCGCCGCCGCTAACTATTACGCGCACTCCGCTTTCACCACAAACGAAGACTCAGACGCGGACAAGTCCGGATCTGGATCCGGATCCGGATCCGGACCCAAGCGCAACCCTTATTACTACAAGAAACAGAAAACGGGCGAAACGGCGACGGATTACCGAGTGGATTACAGGAAGGACAGGGAGGAATGGAGCGACACGGCGATCGCGTGTCTGCTGGAAGCGTACACGGAGAAGCTGAACCAGTTGAACCGGGGGAATCTGCGTGGCAGGGACTGGGAGGAGGTGGCGGAAGTAGTGAGCGAAAGATGCGGCGGCGGCGGCGGCAATAACAATAATAATGAAAATGATAATAATATCAACAACAATAACAATAGCAGCGGTGAAAAGAGAGAGGTGGTGAAGGCTGCGAAGAGCGTGGAGCAGTGTAAGAACAAAATAGATAATTTGAAGAAGAGGTATAAAGTGGAAGTGCAGAGGATGGGAAGCAGTGGGAGTGGCACTAGTAATTGGCTTTGGTTTAAGCAAATTGAAGCTATTATGGGGACTATCAATAATAACCATAATAATGCTATTAGTAGTAGTAATTATGGTTTAGTGAATAAGAGTACTGGTGGTGGTGGCAGTACTGAGATTGTAGAGAGAAATGGTGGAGCTGCAGCTACAGCTATGGCTAGTGCTAGTCCTAGTCCTGTTGCTGTTTCTCCTTTTAGTAGACAAGCTAGGAGATATACTCGTAGCACTTCTACAGTCACATATTATTTGGAA



gi|188415820|gb|EY741622.1|EY741622 CS00-C3-705-087-B06-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cD

CCGGATCCGGATCCGGATGCA
|||| ||||||.|||||..|
GGCCAAGGCCTGGGCCTGTGA

EST sequence (targeted fragment marked with yellow):
CACGCGTCCGCACACTTGCGTATTTGCGGTTTTATAATTAAATTATTTACAGTCATCATACTTTGCTCACTTTACTTACCATATATAATAGTTGATTATTTCAATAATATCTCGCTTTAGTTGCATATCATCATGTTTTTTTTTCTTTTCAATGATGCTGTCAAATGAAATGATTTGATAAAGCCTTGAGAAATGCCATGGGATTGGAGATGGAGGTTGTGGATTGACCACTTAACTGACTTTTTTTTTCCTTTTTCCTCAAATTTGAAGCTTAGTAGCTAACCCACCGAAGAGAGAAAAATGGATGATTCTGTACCCATGCCATAATATTCACCATTTGAATTGCTTTCTAGAGTTTTCTGGAGTTAGTTTTGAGTTATTGATCCGGGTTCAAAACCCGGAATCCGGGAACCCGGATTTTTCCGGGTTGAACCCGGTCCGGACCCGCATGAGAAAAAGCCTGGTTTTAATCCGGGTCCGGAAACAAAAAAATAGTGTCCGGGTCCGGAACCGGGAAGGCTAAACCCGGACCCGAACCCGGATTTTGCCATCCCTAATCTCGATGGCTGCTCCATGTATGTATGNTGTGGTGTGTGGTGTGTATACTACATGTAAAAATAAATGAAGGGCATTTTTGTTACATGTTAGACGATACACGTGTCACGATGAAGGCACGTCTCAATCGCGGCCACGTACTGGAAATAAATAATAGTGACTCAAGAGCAGATGAGAGTGTGCAAAGTGTGAGCAAATTCATCTGGCCGCTACAAAGCAAGAAACGGCCTTCGTACTCAGACGTTACGCCGGCGTTTTGCTCTCGAAAACCTAAGCGTGACTTTCCTTTCTTA



gi|188341810|gb|EY739841.1|EY739841 CS00-C3-705-063-C08-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cD

CCGGATCCGGATCCGGATGCA
|||||||||||||||||| ||
GGCCTAGGCCTAGGCCTAGGT

EST sequence (targeted fragment marked with yellow):
CCCACGCGCCCACGCGCATCCCCCAAACACAGATTCCACCGCCGCCGCTAACTATTACGCGCACTCCGCTTTCACCACAAACGAAGACTCAGACGCGGACAAGTCCGGATCTGGATCCGGATCCGGATCCGGACCCAAGCGCAACCCTTATTACTACAAGAAACAGAAAACGGGCGAAACGGCGACGGATTACCGAGTGGATTACAGGAAGGACAGGGAGGAATGGAGCGACACGGCGATCGCGTGTCTGCTGGAAGCGTACACGGAGAAGCTGAACCAGTTGAACCGGGGGAATCTGCGTGGCAGGGACTGGGAGGAGGTGGCGGAAGTAGTGAGCGAAAGATGCGGCGGCGGCGGCGGCAATAACAATAATAATGAAAATGATAATAATATCAACAACAATAACAATAGCAGCGGTGAAAAGAGAGAGGTGGTGAAGGCTGCGAAGAGCGTGGAGCAGTGTAAGAACAAAATAGATAATTTGAAGAAGAGGTATAAAGTGGAAGTGCAGAGGATGGGAAGCAGTGGGAGTGGCACTAGTAATTGGCTTTGGTTTAAGCAAATTGAAGCTATTATGGGGACTATCAATAATAACCATAATAATGCTATTAGTAGTAGTAATTATGGTTTAGTGAATAAGAGTACTGGTGGTGGTGGCAGTACTGAGATTGTAGAGAGAAATGGTGGAGCTGCAGCTACAGCTATGGCTAGTGCTAGTCCTAGTCCTGTTGCTGTTTCTCCTTTTAGTAGACAAGCTAGGAGATATACTCGTAGCACTTCTACAGTCACATATTATTTGGAA



gi|188465990|gb|EY697263.1|EY697263 CS00-C3-700-058-B07-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cD

CCGGATCCGGATCCGGATGCA
| ||||||||||||.|| ||
GTCCTAGGCCTAGGTCTTCGA

EST sequence (targeted fragment marked with yellow):
CCACGCGTCCGCGCGCTTACCTTTGAATAACCGCCAACACCAGCCCCACGTGTCGCCCTCCGCCACCGATTATTCATCTTTCGACTTCAACCTCCGCCCCTCCAAACGACGTGGCAGTTACAACTGCGGCCGTTGTGGCCAACCCAAGAAAGGCCACTCTTGCCACGTCGGCACCCCCTCCACTCCTTCTCCTGCTGCTGCTACTCCAGCGCCTTCCGATTCTTCCGCTGCTATCTCCGCTCCCACGTCTCTCTCCTCCAGCCGCCCCCCACGTCACCAGCATTACTCCCGCTTCCGCCGAGCCTTGTCTTTTGACAACATCGATCTCACTTGCGAGTCTCCGGAACCGGATTTCGCCATCGAGGAGCTTCTGGATCCGGATCCTGAGCTGTCTGGCGGCTTGCCGGCGGCAGCTTTGTGGGAGGTGCTGAGGAGGTTGCCTCCACCGGGGCTGTTGGCGGCGGCGCAGGTGTGTAAAGGGTGGAGGGAGACGTCTAGGAGGCTGTGGACGGCCGCGGAAGAGCTCAGACTTCAGGTTCCACCGAGGGCTCAGGTCGGGTTTGTTGGATCCGTGTTGCACAAGTGTTCCGCCCTTGTTAGGCTCTCTCTTACGATGGGAAGTGATGTAGATGCAACAATGTTGGCATGCATTGCATTTTCGTGCCCCATTTGGAATCTATGGAGATTACACATCTGGATCTGCAGTAAATCNGATCACTGGTGATGAATTGGGTCGNTTTGATGCTGATAACGATGTCTTGCAAGTCTAAGATGGAAGGGGTTCTAATTTAGAGGATTTGACTCTGCTCATCAGACTTTCTACACTCTGGCTTTCAGACTTTACTCCTCTCTAGATGGTATTATCATGTGCTGATCTCTGATGGGGACTAGGTGAATTCTTCTAAATCANCGTCC



gi|188361229|gb|EY665054.1|EY665054 CS00-C1-101-073-E04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2)

CCGGATCCGGATCCGGATGCA
|||||.|||||.|||| .|||
GGCCTGGGCCTGGGCC-GCGT

EST sequence (targeted fragment marked with yellow):
GTCCGGNATTCAAAGCCCGACCCACGCGTCCGCCATCTTTTTGCACTCCAACAGTCCCCCCTCACTTCCGCTCCCCCACCAACAATGGCTTCCACCGAGTTTGCGATACAGCAACCAGCTCTGCAAGCACAACAACAGCTACATCAAACGGCTCAACATCAACAGCTTCCTTCTACTCTCCCGCAATATCCGGATATGATCATGGCGGCTATCGAAGCATTGAACGAGAAGGCGGGGTCGTCTAAGGCGGAGATCTCGAAGCAAATGGAGTCGGCTTACCCGGATCTGCCGCCGGCCCACACTACCTTACTCGCTCACCACTTAAACAAAATGAAGCAGAGCGGAGAGCTCGTGATGGTAAAAAACAACTACATGAAGCCCGACCCTAACGCCCCGCCTAAGAGAGGACGTGGCCGGCCGCCGAAGCCGAAGGATCCGTTGCCGCCCGGGACAGTGTTGTCGCCGCCGAGACCGCGTGGGCGTCCGCCGAAGCCGAGAGATCCATTCGCGCCGCCGGCTGCCTCTAAGAAGAATAGTTCGGGTGGGAGTGGGAGGCCACGTGGCAGACCTCCTAAGAAGGCTAAGACTGCGCCGGGTCCGGGTCCGGCTCCCGCCTCAGCCGCGGCTTCTTCTGCTTCGGCTCCAGCTACCGGAGCGCCGAGAGGGATGGGCCCGCCACCTAAAGTGAAGCCAGCTGTTGCGCCGGTAGCTGGTTGACTGAAATTAAGCTGACGAAGAAGAAAGAAAGAGAAAGGGGAGTTGATTAGNTATTAAATTAGGGTCTTTTTTAGTGTGGTAGTTTTTACTAATTGATGGGTTTTATTTTATTTTAAATTAATGTAGGNAGTGAGTGTTGTGGTAATGGAGTTGNAATGTGAGAGGTAATGGGATTGNATTNGAATGTAAATTTATGGTCAAAAAAAAAAAAAAAAAAAGGGCGCA



gi|188287806|gb|EY739766.1|EY739766 CS00-C3-705-062-A06-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cD

CCGGATCCGGATCCGGATGCA
|||||.|||||||||| ..|
GGCCTGGGCCTAGGCCCGTGG

EST sequence (targeted fragment marked with yellow):
CCACGCGTCCGCACTTTTTGTTCCGACGTCCGACCTGCCTCTGTTCCGATGGCCACCGTGCTCGAGTGCGTCGCCGTTCCTCGCGCTTCGGCTTCTTCGGTTTTCTCCTCCCCGGCTAAACTTTCGTCTTCTTCCATTAATTCGATCTCTGGCCGTCGGAAATTCGCCGAGTTCAAGGGCCTTAAGGTCAGACCTGTTCGCTCGTTCGGATCGGTGAGTCAGGGTTCGAGTTCGAGCTTCAGACTCCGTCGCGGTGCGCAAATCGTGTGCGAGGCTCAAGAAACTGCCGTTGAAGTGCCTGCTGTGACAGATGCAACATGGCAATCACTTGTTCTTGACTCTGGATCACCTGTGCTTGTTGAATTCTGGGCTCCATGGTGCGGGCCTTGCCGGATGATCCACCCTATTATTGATGAGCTATCAAAGCAATATGTGNGGGAAGCTAAAATGCTATAAGGTTAATACTGATGAGAGTCCTTCAATTGCTACTAGATATGGAATTAGGAGCATCCCAACTGTCATGATATTTAAGAATGGCGAGAAGAAAGATACAGTGATTGGTGCTGTTCCTAAATCCACTTTGAACAACANCCATAAAGAAATTCTTGTAAACATGGTAAAGTAAGGACGCGTTTGCTAAAAACAGGCTCTCTGTTACATGTGTTTGTTGGCCTTGTAACTTACTATGCCTGGGGTTAGAATATTTGGTTTTCACAAAAAATTATCTTCTCCCCTTGTATATTTTTCACGGAAATTGGGTGGGGTGCCCGGATCCGGGTCCGGAGG



gi|188293299|gb|EY703878.1|EY703878 CS00-C3-701-026-G06-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cD

CCGGATCCGGATCCGGATGCA
||||||||||||||||||| |
GGCCTAGGCCTAGGCCTACAT

EST sequence (targeted fragment marked with yellow):
CCACGCGTCCGGGAAATATTAAATTATTGAATTTTAATGTTTTGCAAATCCGGATATCCGGAATATCCACCCGCATCCGGTGCGGATATTAACTCCCATCCGGATTTGCATCTTTTTTTACAGAGCCGGATGCGGATCCAGATTTAGAAACTTACATCCGGATCCGGATCCGGATGCACCTACATCCGAATCCAGATCCGGATTATGCCGACCCTAATTATGTCTTTCCTCCTATTTGTGGCAGTGATGCATCGACTCATATTGACAGAATCTGTACTCTTTGGTTTGACTTATATTCAGAATATGTGTATATATAAAGAGGATGGCCGGATCGACATTATGGCTGAAGGATTTGATGACTCTAGCGCCACTTGAAATTATAGTGCTAGATAAGTTGTGATGGGCGTGTGTGATGTGCAAAAGTTTAATGCATTCAAAAGTCAGCATATTTGTGAACGATCAGACACAGTAGCAAGATACTTACATGGGAGAGGAGCACTAGACTACGTCAGACTTTGATATCTTACTGCTGGCGGANGTGATTACGAAGACAATGCATATTTGAATGAGACTGCTAGAGATTTGCTGGGTTGTACGGTCTCTACCGTTGCTTTCAAGTTTGCTTTTAAGGCGGGATGGGGTTTTTAACCCCAGTCCTCAGATGCTCATCCAGGGATTTTAAGCCCTTATGGGACTCCAAGTCGAAATGGGCT



gi|188459034|gb|EY661610.1|EY661610 CS00-C1-101-035-A09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2)

CCGGATCCGGATCCGGATGCA
||..|||||||||||||. |
GGTTTAGGCCTAGGCCTGGGC

EST sequence (targeted fragment marked with yellow):
CCACGCGTCCGAAGAATTGCTAGCATGAGTTACGATGTAAACGATACCGACTGTAGAGCTCTATCCAGAGGATTGACAGGAGAATCACTGAAAAAATTACCTTGTCACGTGATCTTGGATGAAATCAAGCCAACACAGAGTAGCTGCTGCTCTATATGTTTACAGGTTTTCATTTTATATATTCAACTATTTTAGTTAGAAATTTTGGTGCTTTTGTTTGTCATTATTCCTCATTAGATACATGGGTGCTTGGTGGTTCAACTATTAAAACATTTGAGGTGGTGCAAGAAATCTGGGGTTGGCTTATATAATCACATAATATTAAAAGAAAGAAAAACAATCATACTACCATCATACTTGTAGTTTGGTGGTTCTGGCTCTTAAGGATGGCAATTTAACCTGGACCCGGATGAACCCGGAAAATCCAGGCCGGGTTCAACCTGTACTGGAGTGAATAAAATCCGGATCAATATTTTCAACCCGGACATTTCCGGGTCCGGATCCGGATTTGGGTAAACCCGCATATCCGGAACCCAGACCCGGATAACTATTTTAATATTAAATTTTAAATCATTTTAAAATAAATAGAAAAATTAGAAAAAATCAGCAGCCCTTATCCACAGCCACGGCAGCCAAACCAAACCCAAACATTTACTCTCTCTCTTTAGCCCTTCTTTTCAACAAATCATCATCGTCGCTCATCATCGTTTTGCCGAGTTCATGTTCATCTTCATCATCAGCTGCCATTTGATCAGCTATGTCACGAGTTTTGGCCGCCGTTTGTCCACCTTCGCGAATCANGATCTCGATTTTGGCCGCAACACTTCTACCCCCAGTGTTTTGCTTTGTCTCAGTACTTCTTGNTGATAATCGACG



gi|188293299|gb|EY703878.1|EY703878 CS00-C3-701-026-G06-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cD

CCGGATCCGGATCCGGATGCA
||||||| |||| |||||| |
GGCCTAGACCTAAGCCTACAT

EST sequence (targeted fragment marked with yellow):
CCACGCGTCCGGGAAATATTAAATTATTGAATTTTAATGTTTTGCAAATCCGGATATCCGGAATATCCACCCGCATCCGGTGCGGATATTAACTCCCATCCGGATTTGCATCTTTTTTTACAGAGCCGGATGCGGATCCAGATTTAGAAACTTACATCCGGATCCGGATCCGGATGCACCTACATCCGAATCCAGATCCGGATTATGCCGACCCTAATTATGTCTTTCCTCCTATTTGTGGCAGTGATGCATCGACTCATATTGACAGAATCTGTACTCTTTGGTTTGACTTATATTCAGAATATGTGTATATATAAAGAGGATGGCCGGATCGACATTATGGCTGAAGGATTTGATGACTCTAGCGCCACTTGAAATTATAGTGCTAGATAAGTTGTGATGGGCGTGTGTGATGTGCAAAAGTTTAATGCATTCAAAAGTCAGCATATTTGTGAACGATCAGACACAGTAGCAAGATACTTACATGGGAGAGGAGCACTAGACTACGTCAGACTTTGATATCTTACTGCTGGCGGANGTGATTACGAAGACAATGCATATTTGAATGAGACTGCTAGAGATTTGCTGGGTTGTACGGTCTCTACCGTTGCTTTCAAGTTTGCTTTTAAGGCGGGATGGGGTTTTTAACCCCAGTCCTCAGATGCTCATCCAGGGATTTTAAGCCCTTATGGGACTCCAAGTCGAAATGGGCT



gi|56591753|gb|CX077763.1|CX077763 UCRCS08_58H03_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis

CCGGATCCGGATCCGGATGCA
||||||||||||||.|| |
AGCCTAGGCCTAGGCTTAGGC

EST sequence (targeted fragment marked with yellow):
TGAACATAAGTTTAAATATAATTTTTCAACCACTAGACTAAATTGAAATAAAGGTCAATATTAGATGACATGACTTATTAATTTCATTAATATTTTTCTCTCTTCCCTTTTTTATATTTAATTCTCCTTTTTTTATTTAAAATTTTCTTGTAATTTTCTCTCTCCTATATATTAGTGAAATGAAAACCATCAAAATTAAATAATTAACAAATTTTGTGTTGTCAGTATTTGTTCAGGTAAAAATCTAAAATTACGTATATTATTGTTATACATTTACGATGAAGTTCAACCTCTATTTATCAATTTAAATATTGGTATTCATTCAGATAAAAAGTTGAAATTATCATGTTTATGTGGTGTAGGGTGTGTGTGTTGCGAGTAAGGTACCTTTCGGAGGCCATAACTTAGAGTTGGCAAAATTCGGATTCGGATCCGGATCCGAACGTAGATGCATTCAGATCGGGATTAGGATTTATAATTTTACATCCAGATCCGTAAAAAAAGATGCGGATTCAGATGCGGATCCAGATGCGGGCAGATATTCCGGATATCTGGATCCGCAAAAATTAAAAATTAAACATTAAATTTATAATTTAAAAATTCAATAATTTACTTAATAATATCAAATAAAGTCCAATCATAATTTAACAATGAATAATTCAACATAAATAACATACAAATAATCTCATAAATCTACAAATAAAATTTAAATTTTCATTTTTTATTTCATTTTTAATTTAATTTTTAATTTAAAATA



gi|188434015|gb|EY724726.1|EY724726 CS00-C3-703-079-G11-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cD

CCGGATCCGGATCCGGATGCA
|||.|.|||||||||||. |
GGCTTGGGCCTAGGCCTGGGC

EST sequence (targeted fragment marked with yellow):
CCACGCGTCCGAGAAAACAAAAACTCCTCGTGGAAACTTAAAACAAGAAACAACTTCATCGACAATACTAATGCACCCTCACTCACTGTCACTGTTTCGGCTGTGTGTTTAATACTCGCTCTCCGGCTCGGTAGCAGCTCCCCCCCCGCCCCAATGGATGGTTCCACTCGGCGGAAGCCTCCGGCTTCGCTCCACCGGGGCCGTCGATCTTGGTGCTGCTCATTCGCCGTCCCTCCTTCAAGCCCCGAAAATCTCAAAGCCCGCTACCCAAAAACCGATGTAATCACCAAAACCGGTCCCAAATCGTTCCCCAACTCGCCCAAATCCGCTCTGAACATCGTGAACCGGATCGACCCACGTCGGATCTTGTCGCCGGGTCGAGTCTCCCCCATCGATTCGGATCCCACTGGCGATTCGTTCCGACATGTCCCCCAAACCCAGTCTCCAGCCGCGGATTTGACAGTACCCAGATCGAGATCGGGCTCTTTTCGGGCACCAAACGGGAGCAATTTCGTAAACTTTCCGGGTCCGGATCCGGGTTCGGGTTCGGGCGATGGGGATTTGTTTGATGTGAGGCTGAATTTGAAGGGAAAAAGTGGTGGGTGGTTACTGTGGGAAACCAACTCAGGTGCTTTGGGGGCGGATCGGGGTGGTGTCGGCGGATTAGTTGAAGAATTCAGCATTCCTATGGGGGTGGTTCCAGGCACACTCATGCTACATGGTACAGAAATCGATGCGGTAGAGACGACCAAAATGTCTGTAAGCATTAAGTGTCGGACGTCAAAAAATAGGGAGGTTTCCACGAAGAGAATGCATCCAAGGTTGAACGATAGCAGCCCT