| mature miRNA: CGCTATCCATCCTGAGTTTC species: Citrus sinensis database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|68273171|gb|DR404204.1|DR404204 CSAG-PNP1245J13 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone CSAG-PNP1245 CGCTATCCATCCTGAGTTTC EST sequence (targeted fragment marked with yellow): ACGGCCGGGGAAGAACCAACCAAAACANNNNACTCAATTCCAAAGTCTTCTATCTAGTTTGGTTCGGTTTCTTGGTTTTTAGTTGTGAGAAAGCATTGTCTAAAAGTAAAGAAGAATCTGTTAAGCTCAGGAGGGATAGCGCCATGGGTGCCATGAATATGGGAATGATCTAGGGTTTCATGATAAATAATGGGCACTGGCGCTATCCATCCTGAGTTTCATGGCTTCTTCTTACTCTCTCTCTCGAGATCGGCTC | |||||||||
gi|188277174|gb|EY734554.1|EY734554 CS00-C3-704-101-E09-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cD CGCTATCCATCCTGAGTTTC EST sequence (targeted fragment marked with yellow): CCACGCGTCCGGGGTGTCCGAGTACCCCCCCTTATTAGATGGGAACTCAAGATGGACAGCGATATACCCCTTTATGCTTTTGTTTGGGGAGCATTTGTTTTATCCGGATTTGCTGTCATTGTTGCCGCTGTGGGTGACAGGCCTATGAATAAGTACAAAGATGGATACCAACCAATTATGATCTGAACTATTACTTATGAGGCTTACCCATGTGTATTAAATAGAAATTATGTTAGCTCTGTACCGTATGTTATTGAAACTCTCGTTTCCCTTTGCTAGACGAGTGTGAATAAACCCGGGCGACTCACAGACTGCTGTGGACCAATGTGGGTTATGGTCTAGCCCAATATTAATGCCATTACTGTTGCTAGTAATTGGAACTGTGTGATTTATGTGAATGTTTGATGGACTTATATGTCCATTTCTTTCTTTTTCTCGTAGACTCAAGGACATGTCCTTTCCACCACTCATTATGACTCTGCGGGAGGGACAGCCTAAACCACTCCCATATCAATAAACATTATCGTCCCTTTATCGCCACTAAACATTTATATCCGATCTCAACTATTCATACCCTAATACACCTACTATCACAATGAGTCAAAATAAATCCCACGACTCCTCTAAAATTAAAAGAAACATACACTCTCCTTCCATACCCCTCTTTACACTATCAATACACCCAAACTTCCTAGCTACCTCTCTAGTAACCACTTACCACCTCTACAATACATACCTAACTTTATCGCTTTACTACCCATCCCCTAACTCTCCTTTACTCTTATATCATACCATATTCTACTATTACAACCATCTCTCCTAAATTCATCATATTCAAATTATAGTTTCCATTATCACTTAATTCCTATGAAGAAACACTACAAAATAACACCGAAAAACTAAATA | |||||||||