| mature miRNA: CGGACCAGGCTTCATTCCC species: Citrus sinensis database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|188283605|gb|EY728071.1|EY728071 CS00-C3-703-110-B09-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cD CGGACCAGGCTT-CATTCCC EST sequence (targeted fragment marked with yellow): CTCTCTTCTTCTCTCCGATAGTCACCACTTCTTTGGCCAATTCATTGAAAACTTTTAACTCCAAAAAACAAAACTTAAAGATTGGTGATTGTTTCAGCGCTTTCCATTGAGAATTTTGACTGAGAATTATAAGTTTCAGAAGATGACCATTTTGAAGCAATCTTCAAGTAAAAACCTAAGGTCTAAAGGCTTTAAGGTGAAACACTTTCTTCAAATATGCTTGTTGCTTGCAATTTGCTTCTGGTTGCTTCACCAAGTCAGAAAGTCATATGACAGGAAGAAGGCATACGAGGAGGGCACCGCAACACAATCAGAAGTGAAAAGTGAGCATGAAGGCATTAAACTTGGCAGAAAAGACGTCCGTCTGCCAGTACAGCAAGTCACTTTGGAAGGAGAGAGACAAGAGGTTGATGAGACGAAGAAGGCTAAACCTGAAGAAAGCAAAGATGAAGGAGGAGGGGGCGGAGAAGATGAGATTGATGGGTAATGAGCCAGAACAAGTCAGAAAAGGAAGAGCCTGAAAAATAAAGGATCTCATTGATGAAAAAAAAAGAGAGAGGGAAGAACAAAACTGCGAAACAAGAGAGGGAAAAAGCAAAAAACCCACTTTGGGGATGAAAGCCTGGTTTGTAAATCCGGGGGGCATTTAGGGAAGATGGGAAATATTTTGGAAAGCCCAAAAAGGAACCTCTACAGGGGGTGAAAAAGGGAGCTGGAAAAAAAGAAATCCGATTCAACCTGGTTTCCCATTTGGGAACCCCCAAGGTCCGAAAAAAATAAAAAGTGAAAAAAGGCAAAATGTCTTTGGGGAAAGGGATTAGGGGGTTTTGGCCGGGGAAAAACCCTCTTAAAAAAAGAGGTTAAAAAAGGGGGGGGGAGGAGGGCCCCGCGGAAGGAGATTTTCTCCAAGAAAGAATATTGTGTAAGAGGGGTGTTTTTTGGTTTTATGAGTGGGCCTAGTTATGTGGGGGTTAGAGGGGCACCATGC | |||||||||
gi|188313115|gb|EY747418.1|EY747418 CS00-C5-003-044-G07-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA se CGGACCAGGCTTCATTCCC EST sequence (targeted fragment marked with yellow): CTCGTTTCTTTGCATACCACATGGCTGGCCGATTCCAAGGCTAAATCTGACATCTCTTTCGCCGGAACCTTCGCCAGTAACGCTTTTGCCGCTTGCTTTGCCGAGATTTGTACTATTCCTTTGGACACTGCTAAAGTTAGGCTTCAGCTGCAAAAGAAAGCTGTCGCGGGGGATGGAGTGGCGTTGCCAAAGTACAAGGGTATGGTGGGAACAGTTGCCACCATAGCTAGGGAACAAGGTATGGTGTCTCTCTGGAAAGGCATTGTTCCAAGATTACATCGTCAATGCTTATTTGGAGGGTTAAGGATTGGATTGTATGAGCCTGAGAAGACACTGTATGTGGGCAAGGACTTTGATGGAGACGTTCCTTTAAGCAACAAAATACTTGCAGGACTTACAACTGGTGCTCTCGGGATCGTGATCGCAAATCCCCACTGATCTTGTGAAGGTCAGACTTCAAGCTGAAGGAAAATTGCCTCCTGGTGTACCGAGGCGCTACAGTGGAGCGTTGAATGCTTATTCCACTAATGTGAAACAGGAAAGATTTTGCCGGCTCTTTTGGACTGGAGGTGGACCCAATGTTGCACGAAATGCTTATCATAAATGCTTGCTGAACTGGCTAGCCTATGATCAATGGAAGCGAACAATTTTTGAAAAATTCCCCGGGTTTCAAAGAATAACGCCCCCCCCTCATCCCCCTTTTCTGGGGAGGAAGCCTGGTTTTGTCGCCCTTTGGATTGGTTCCCCCCGCAAAGGGGGTTTAATTCCCGGGGAGAAGGGGGGGAATCCAGGTTAAAAAAAAAACACACTGGATTGGTCTCCATTAAAAATCCCGGAAGGCGCGGGGGGGCTCCTTGGGCCCACTTTTTTAAGGGCTGCCTCCAACCCCCACCCTTTCCGACCACACAATACTACTTTTGCACAGACCACACTACTCGTTTTTTTAACCCCCTT | |||||||||
gi|188287665|gb|EY737911.1|EY737911 CS00-C3-705-036-F07-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cD CGGACCAGGCTTCATTCCC EST sequence (targeted fragment marked with yellow): CCACGCGTCCGAATCGAAGGTGTCGAGAGAAGCAGAGGAAAGAGGCTTCAGACTCCAGACAGTGAATAGGAAATTAACAGCTATGAATAAACTGTTGATGGAGGAGAATGATCGGCTGCAGAAACAGGTGTCGCAGTTGGTGTGTGAAAATGGGTATATGAAGCAGCAATTGCGTACAGCACCTGCGACTACTGATGCGAGCTGTGACTCTGTGGTGACCACTCCTCAGCATTCACTGAGAGATGCCAATAACCCTGCTGGACTCCTTTCTATTGCAGAGGAGACCTTGGCAGAGTTCCTTTCAAAGGCTACAGGAACTGCTGTCGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTTGGGATCTTTGCCATTTCACAAAGTTGCAGTGGAGTGGCAGCTCGAGCTTGCGGTCTCGTAAGTTTAGAACCTACTAAGATTGCAGAGATCCTTAAAGATCGTCCATCTTGGTTTCGGGATTGCCGGAGCCTTGAAGTTTTCACAATGTTTCCTGCTGGGAATGCTGGAACAATTGAACTTTTGTACACACAGGCATATGCTCCAACTACTCTTGCTCCTGCACGGGATTTCTGGACTCTAAGATACACTACAACTTTAGACAATGGGAGTCTTGTGGTCTGTGGAGAGGTCTCTTTCTGGTTCTGGTGCTGGACCAAATCCAGCATCAGCTGCTCAGTTTGTGAGAGCTGAAATGCTCCCTAGTGGTTGTCTGATCCGTCCTTGTGATGGTGGAGGGTCAATTATCCATATTGTCAACCCCCTTAATCTTGAGGCCTTGAATGTGCCAAAGGTGCTTGCGGCACTTT | |||||||||
gi|188414967|gb|EY742160.1|EY742160 CS00-C3-705-054-G07-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cD CGGACCAGGCTTCATTCCC EST sequence (targeted fragment marked with yellow): CCGATCATCACAAAAATAACATTTGAGTCTCTCTTTTTTCTCTCTTCTTGTGTCTGTGAGTGATATTAACGAATTAGTGAAGAATGAGTGTTGGTGGGTCAGTGAAGGAGTTGAAGACGAAGGAGGAGCTTGATAACGTGCGCCACAGTGGCGCACCGGTTATCCTTCACTTCTGGGCATCATGGTGTGAAGCCTCTAAGCACATGGACCAAGTTTTTTCTCACCTTTCTACCGATTTTCCACATGCCCATTTCTTCAGGGTTGAAGCTGAAGAGCACCCCGAAATTTCTGAAGCTTACTCTGTTTCAGCTGTGCCTTTCTTTGTCTTCTTCAAGGATGGTAAGGCTGTTGATACATTGGAGGGTGCTGATCCATCCAGTTTGGCCAACAAGGTTGCTAAGGTTGCTGGATCAGTTAACCCAGGAGAACCTGCTGCCCCTGCCAGCCTTGGGATGGCTGCTGGACCCGCTATACTTGAAGCTGTAAAAGAGTTGGCAAAACAAAATGGCTCTTCCCAAGTGAACAAGGAAGTGGAGCCTGGTCTCAGTGATGCTCTTAAAAGCCGGCTGCAGCAGCTGCTTGACTCTCACCCTGTCATGCTATTTATGAAGGGAACTCCTGAAGAGCCCAAGTGTGGGTTCAGTAAGCAAGTTGGTGACATTTTGAAAGATGAAAAAGTCGAAGTTTGGAGGTTTTCACTTTCTTTCGGAAAATGAGGTTCGTGAGGGGATTGAAAAAGTTCTCTAACTGGGCCCGACTTTTCCTCAACTTTTATTTGCAAAAGGAAAGTTTCTGGGGGGGGTGCAAATTAATAATTTGCATGGCCCAAAAAGTGGCGAAATTGAAAAATGTTTTTCCCAAATACTTGGAAATTAAAACTG | |||||||||
gi|188385771|gb|EY707827.1|EY707827 CS00-C3-701-073-A08-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cD CGGACCAGGCTTCATTCCC EST sequence (targeted fragment marked with yellow): CCACGCGTCCGCCGATCATCACAAAAATAAGAGTTGAGTCTCTCTTTTTTCTCTCTTCTTGTGTCTGTGAGTGATATTAACGAATTGGTGAAGAATGAGTGTTGGTGGGTCAGTGAAGGAGTTGAAGACGAAGGAGGAGCTTGATAACGTGCGCCAGAGTGGCGCACCGGTTATCCTGCACTTCTGGGCATCATGGTGTGAAGCCTCTAAGCACATGGACCAAGTTTTTTCTCACCTTTCTACCGATTTTCCACATGCCCATTTCTTCAAGGTTGAAGCTGAAGAGCACCCCGAAATTTCTGAAGCTTACTCTGTTTCAGCTGTGCCTTTCTTTGTCTTCTTCAAGGATGGTAAGGCTGTTGATACATTGGAGGGTGCTGATCCATCCAGTTTGGCCAACAAGGTTGCTAAGGTTGCTGGATCAGTTAACCCAGGAGAACCTGCTGCCCCTGCCAGCCTTGGGATGGCTGCTGGACCCGCTATACTTGAAGCTGTAAAAGAGTTGGCAAAACAAAATGGCTCTTCCCAAGTGAACAAGGAAGTGGAGCCTGGTCTCAGTGATGCTCTTAAAAAGCGGCTGCAGCAGCTGCTTGACTCTCACTCTGTCATGCTATTTATGAAGGGAACTCCTGAAGAGCCCAAGTGTGGGTTCAGTAGGCAAGTTGTTGACATTTTGAAAGATGAAAAGGTCGAGTTTGGAAGTTTCAACATTCTTTCGGACAATGAGGTTCGTGAGGGATTGAAGAAAGTCTCTAACTGGCCGACATTTCCTCAGCTCTATTGNCAAGGAGAGCTTCTGGGTGGGTGCGACATAGTAATTGCAATGCANCAGAGTGGCGAACTGAAAGATGTTTCCNGAGATCATGGAATTGAAACTGNTGGTGGAA | |||||||||
gi|188319753|gb|EY654361.1|EY654361 CS00-C1-100-054-F04-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequ CGGACCAGGCTTCATTCCC EST sequence (targeted fragment marked with yellow): CCACGCGTCCGCTTTGAACTCTCCATGCGTGCTGGATGTGCACAAAAGGAACATCCTTATACCCTGGGTCCTCTCTTTTCAGATCCTGTTTGTGAACAACATGTGACATCATTGATGCAAGAGATGTTTCTTGTGGCTCAAACTTCTGATGACCATCAACTGCAGCAGTATGCGGCATGGGCAATGTCATTTCTTCGATGTCATCTTTGGTCAAAAGAACTACTAAATACTGACAACAATATCAAGGCTGATTTATTAGGTTCAAAATCTGTTTCTCAACGTTTCTCCGACGACAATGTGGTCATGAAGCTTGGTCTGTGGTTAAGCCATCTTAATTATTCTGGGACAGATGCCACTGCACGTGTTGTAACAGTATCAACTATTTTACGGTGTCTTACACGAGCACCCAGACTGCCAACCTTGGATTGGGGAGCAATTATCAGATGCTGCATGAGATATGAGGCCCAGATTGCTAAGGGATTGCCACCAGACTCTGCTTATAAGAGAGGAATCCTTAGAGAGGAATGTATACAGTTTTCACTAGCTCATGCCAACCAATTTCATCCGCTTCTATCTTTCCTCGATGAACTGTCTGATCTACCTANGTTCAAAACACTTGAGCTGAACTTACAGGCAACTTTGCTCTTCCATTTGGCGGACCTGATAAAATTTGTCTCAGGTTCAAGGCTTGAGAAACTNATTGATGATATGGCAGACTATTTATTTTCAGTTACTTCGTACCAAGTGTATAATCCTGATCAGAAAAGCTCCTACGAGTTTCGTTTTGGAATGGTCTCATCATTGTTTGAAGAAGCTCTCTTGACTCTCTAGAGCCATTCCTACATGAAAGGTGCATGGAG | |||||||||
gi|188271486|gb|EY707560.1|EY707560 CS00-C3-701-070-A12-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cD CGGACCAGGCTTCATTCCC EST sequence (targeted fragment marked with yellow): AAAAATATGGTACCCTGCAGTCCGGTCCGGAATTCCTCCTCGACCCCGCGTCCGGAAAGTTAATTGAATAATAGAAGAGAAATGGCAGGGGCAGTGAAGAGGATCAAGCTTGGTTCGCAAGGTCTAGAGGTTTCAGCACAAGGCTTAGGATGCATGGGCATGTCCGCCTTCTACGGGCCCCCGAAGCCCGAATCCGACATGATCGCCTTGATCCACCATGCCATTGACAATGGCATCACTTTTCTCGACACTTCCGATGTTTACGGACCTCACACAAATGAAATCCTTCTGGGCAAAGCTTTGAAAGGAGGGTACAGAGAAAGAGTTGAATTGGCCACAAAATTTGGTATCATAAATGAGGATGGGCAGTTCTTATATCGTGGGGATCCTGCTTATGTGAGAGCTGCATGTGAGGCCAGCTTGAAACGACTAGATGTGGATTATATTGATCTTTATTACCAGCATCGCATTGACACTAAAGCTCCGATTGAAATCACGATTGGGGAACTGAATAAACTACTTGAAGAGGGTAAAATACAGCATATAGGTCTCTCTGAGGCTTCTGCTTCGACCATTACAACATCTCATGCTGTCCACCCAATAACCGCTGTGCAATTGAAATGGTCCTTGTGGACACGAGATGCGGAGGCACATATACTTCCTACTTGCAGGGAACTCGGCATTGCAATTGCTGCTTATAAGCCTCTACGACTGGGGTTTTCCCATCAGGCCTTGATTGGCTGAAAACCTTTCAAAGGACGAATTTAGACCGAGTTTCCCGATATTTCATGCTTAAAATTTGGAATATAATAAAATTTTATTTGAAAGTGTTATAGAAATAGCGGATAATAAGGTTTTACCCACCCCACTTGGCTTTACCCTGGGCCCTCTACCACGAAATCACCCGGGCCCATTCCGTGAACCACCCAAT | |||||||||
gi|188260923|gb|EY684240.1|EY684240 CS00-C1-650-054-F12-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRN CGGACCAGGCTTCATTCCC EST sequence (targeted fragment marked with yellow): CCCACGCGTCCGCCCACGCGTCCGCTCACGCGTCCGCTTGCATTTAAAAGGTTGCACCTCTTGAAATCCACAAGGAAAACCTGCTGGATGCAGAAGAGCAACTTCGCTTTCTTCTTCATTTTATGACAGGAGCTAAAATCAGTTATTTTCTACCTCTGCTGAAGGGCTCATTTTCTTCATGGATATGGAGCACATTAGGAATACCTGCATGTGAAATATTTCCGAGTGTCAGATGTGGTTTGGAAATGGCTATCCTCAATGCCATTGCAGTAAAACATGGTTCCAGTTTCTTGAACATTCTCTATCCCCTGACAGAAATAGATGAAGAAATATCTAAACGGTCAACAAGTATAAAGATATGCGCCCTCATTGATTCGAATAAATCTCCTGTGGAGGTTGCTAGCATTGCCACCACTCTTGTGGAAGAAGGGTTCACTGCAATCAAACTCAAAGTTGCACGCCGGGCAGATCCCATTAAAGATGCAGAAATTATACAAGAAGTAAGAAAGAAGGTTGGGTCACAGGATTGAACTCCGTGTGGATGCCAATCGTAACTGGACCTATCAAGAAGCCTCCTTGAATTTGGTTTCCTTTAATTTAAAGATTGGGGACTTGGCAGATATTGGAGGAAGCCTGGTCCGAAAAGAAAAGGGAAATTATAAAATCACGGTGAAAAAAGCGGCTTGGCTGGTCCGGTTGGAAGAAACCCTTGACAAATTTCCAAAAAGAATCTCCTTATAAGGGCTGGAAAAATATAGCCTCACCCAGGAAAAGTTGTCATTTGGGGAAAAAACAGAAAGGAACTTGAGGGAGATTGAAAAAGGAGAGGATTAATTGACCAAAAGAGGCCACAAGCAGCTTGAAAAAGAAAGGGTGGGCGGCTAAAGGGTTTACTTTAAAAACGGGGATAAGAAAT | |||||||||