| mature miRNA: CTGTTAAGCTCAGGAGGGATA species: Citrus sinensis database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|306800275|gb|HO047389.1|HO047389 CVSOVPOAN773 Library from post anthesis stages of ovules of polyembryonic Citrus sinensis Ci CTGTTAAGCTCAGGAGGGATA EST sequence (targeted fragment marked with yellow): GCCAGGCTAGTCAAAGCAAGAAAGGAGAAGATTTTACTCTTCTCAAAAACGAATGTCAAAGAGCCATGGGAGATGGAGTCACCACATTTTCTGTATATGGGCTATTTGACGGACACAATGGCTCAGCTGCCGCTATTTACACCAAGGAGAATCTTCTGAAAAATGTATTAAATGCTATACCTTCAGAGCTTAACAGAGATGAATGGATATCTGCACTTCCACGGGCCATGGTAGCGGGCTTTGTGAAAACGGACAAAGACTTTCAAGAAAAAGCTCGTACCTGCCCGGGCGGCCGCT | |||||||||
gi|188266505|gb|EY671401.1|EY671401 CS00-C1-102-080-G04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) CTGTTAAGCTCAGGAGGGATA EST sequence (targeted fragment marked with yellow): CAATTTATTCTTCTTGAGTTTAATAACAGATAAGACAGGTGGTTGAGTCACTTCATCTTCTTTATATTCTTTTTTATTTTGGGGGTTTTCTCTTATCTGTCCTTCCTCTCTTTGTTGATGATTTTGCAGGTGCTTAGACATTGATTTCAATTTTCATGCCATTAACACATTGCCATATTTCATCTCAAGACAATTGTTTGTAATGGGGTCTGAAGGGCCACCTGCTGTAACAATCCATGTGACTGGATTTAAGAAATTCCATGGAGTTTCAGAGAATCCAACTGAAACAATTGTTAGCAATTTGAGAGAGTATATGAAGAAGAAGGGTATGCCAAAAGGACTAATTCTTGGAAGTTGCAATATTCTTGAGACCGCCGGACATGGGGCAGTTGCTCCCCTATATCAGACATTGCAATCCGCCATAAATGAGAAGGATTCTGAATCATCAAATTCTATGAGAATTATTTGGGTTCACTTTGGTGTTAACAGTGGTGCAACAAGATTCGCAATTGAGCAACAAGCTGTCAATGAAGCTACTTTTCTATGTCCTGATGAAATGGGGTGGAAACCTCAAAAAGTACCCATTTTTCCTGCTGATGGTGAAATATCACGAGTACGAGAGACTTCAATTCCTGTTGAGGAGATTACAAGAACATTGGCAAAGAAAGGTTATGAGGTGATTACCTCAGATGATGCAAGGCCGATTATGTTGCAACTATGTTTACTATCACTCCCCTTCGCTTTGAAAACAAAATTGGGAAAAGGAAACTCCTCCGTTCATGTGCCTCTCTTCTTTACCCATGAATGAGGAACCCCAAATGGCAATTTGCCCCTTCCCTTGTTGGGGGCACTTTGCTACCTTTATGGTAAAGGGAAGGGGAATGGTCCATTTCCCCTTTTAATTTTTTTTGCTTCCACAAAAACTTTTAATATGGGGGGGTTTTTAAAAACCGGGGCCCCTTGGGGGG | |||||||||
gi|46213539|gb|CN188600.1|CN188600 UCRCS05_0006G10_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA CTGTTAAGCTCAGGAGGGATA EST sequence (targeted fragment marked with yellow): TAAAGGCTTTGAAATAGNTTTCCCTCTTATGTGCTTCCCTTAAAAGGACCAAAAGCTTTGGGATGAAGACCCGCATGAGTACGTGAGAAAGGGCTATGATATCATTGAACCTTTATATAGTCCCCGAACCGCTTCCATGGATTTTGTCAGTGAGCTGGTCAGAAAACGTGGGAAAGAGAACCTTCAAAAGTTCATTCAATTCATTGTTGGAATTTTTAAGAGATATGATGAAACACCGGTGGAATATAAACCATACCGACAGAAAGATGGCGCATTGCTTGCTATTGGAGCTCTTTGTGATAAATTGAAACAAACTGAACCCTACAAATCTGAACTGGAGCGCATGTTAGTGCAACATGTCTTCCCTGAGTTTAGCAGTCCTGTTGGTCATCTTAGAGCCAAGGCGGCATGGGTTGCAGGACAGTATGCCCATATCAACTTCTCAGATCAGAACAATTTTCGTAAAGCGCTGCACAGTGTGGTTTCTGGGTTGCGGGATCCAGAACTTCCTGTTCGTGTTGATTCTGTGTTTGCATTACGATCATTTGTTGAAGCTTGCAGAGATTTGAATGAAATTCGTCCAATCCTCCCTCAACTACTTGATGAATTTTTCAAACTTATGAATGA | |||||||||