| mature miRNA: GGACCTTTGGGGATATTTGGT species: Citrus sinensis database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|188468539|gb|EY695189.1|EY695189 CS00-C3-700-033-G09-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cD GGACCTTTGGGGATATTTGGT EST sequence (targeted fragment marked with yellow): GAATTCCCGCCTCGACCACGCGTCCGGCTGATTCTCTCTCACAATCTCCTCCCACACACTTTCTTTACCTTTCATAATTTCCTCCAATCTCACTCTCTCACTACCCTTTCCATCTTCAAGCCCATAATTCTCAATCTCAAACTGCTCAGCCAACACTTTCCATAAATGCTTCCACTTAAAAACATCTCCATTGGTGCAATTAAAAGCTTCGTTCCTTGCATTTGGATCCAGTGCAGCCCAAATTTGCTGCTCCGCAATTAACTCTGCGTCCGAAACTTCGTGGAAGCCTTCCCAAGTATCTCTACTGCCATGAAATAGTAAAGGAATGCCTTCATGTTTACAAATAGCAGCGTACACGCAGAGAGTGGCTGTAATATTCATCAAACTATAAGGTGAAAACCCAAATATTCCGAAAGGTCGATGTATGGACCAATTCAAGCCTTCTCTTTTTTCGACTTCTTCAAACAATATGTCTTCTTGAGTATAGTAAAAAAGTGGTACGTTTAACCTCGGCAAATCCTCTGTAAAAGGAGGATCGTGAGACGGTATCTTGCCAATACACTCGAATGGTCCCAGGTAATGTTTGCCTCCAGTTTGAAGACAGATGTGACGGAGATTCTGTGCGTTTGGGATTACAGAACGGAGCACGTTATGAAACATTGCACCGTTGATCTGGCAGTTCTCGGCTTCAGTGGGACGGCTGGCCCACGTCACGTAGAAGATGTGGGTGACATCAGTGAGTTTTGAGAGCTTGGCTTGTGTATCGTCCGGGTCGGAGACGTCGCATTGGATGTACTCCCATCGATGACTGGCATTCCAGTCNNGGCCTGGGCGTCGTGCCACCCGTAGACCTTCAGGGGCCACCAGGAGTATCGATCGGGGCATATCTCAGCCAGCTGTGCCTACAATCCTGTCACGCTATATAGTC | |||||||||
gi|188463055|gb|EY686960.1|EY686960 CS00-C2-003-031-C12-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequ GGACCTTTGGGGATATTTGGT EST sequence (targeted fragment marked with yellow): AGAGAGCTAACGGGGGGGCGTCGCGCTTCCCCCCCACCTTCCAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCTCGACCCACGCGTCCGGCGTGAAGAGTCCGAAAGTTCTTTTAGGGAGAGAGAGAAGGCATTTGAGGAAGAAAAAATGAGAGAATTTCAGCAAATTAGCTCTCTGAAGGAAAAAGCGGAAAAAGAATTGTATTGAGATTCCTCTGAAGAGGCCATTAACCACGGTGCAGTTGCTGAACAATCAAATCTACCAGAGGATCAACATACATTGACCTCAAAAAACAAATCAAATGTTCCCGAGGGTCTGCATACATTGACTTCAAACAATCACACCCAAGGAGGTAACGAAGAGGCCAGCATACTAATTGTAGATAAGATCATTAAGATTTCTGAAGTGACTTGTGAAATGACTGATGCTGACAACTTCATCAATCAAGAAAAAATAGATGGTTCGCAGAATTCTGTTGCGGAATCAGCTCACGATATTGCTACAGTTGGCGGCACAAATGACCATTCCACCCCTGCCCACACAGACGACGCCGTCCCCCCACACACACCCGAGATAGACGGAATCGGACGCGCAGAACACATGGGAAATGTGAAGGATCTTAGCGGAGGGGGACGGGGGCGCGAGGACATGCGGGCCGCCGAACCACAAGGGGAGAGTGGACCGCGACGCCGCCCCCCCCCCGCGAGTGTGGGGCGCCCCGGGAGCGCCCCCGAGCCCGGGCGGCGCGGAAAGAGGAAGAGGCCGCGGAGGGCCAGGGGCGACACACCGACGGCAGAAACTCAGACGAGAGGCCGCGAGAAAGGCGAGGACGCCCCCAGATGCCGGAGCGCCGCCGCGAGAAGTATCCAATT | |||||||||
gi|188315581|gb|EY683640.1|EY683640 CS00-C1-650-044-G10-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRN GGACCTTTGGGGATATTTGGT EST sequence (targeted fragment marked with yellow): CTTTTTTTGATCTCTCGAGTAACCTATTATCTGGAGGGCTTCCCGATTGTTGGTTGAACTTTGATAGCCTATCCATTCTTAATTTGGCAAACAATAGCTTCTCCGGGAAAATTCCAGACTCGATGGGCTTCCTCCATAATATCCAAACACTGAGTTTACACTCCAATAGGTTAACCGGGGAGTTGCCTTCATCTTTAAAAAATTGCTCACAACTGAGAGTTTTGGATCTTAGGAAGAATGCATTGTACGGTGAGATACCAACCTGGATAGGGGGAAGTCTTCAAAATTTGATTGTTCTTAGCTTGAAATCTAATAATTTTCATGGAAATATACCTTTTCAGTTATGCCATCTGGCGTTCATTCGAGTTCTGGATCTCTCTTTAAACAATATATCGGGAAAGATACCAAAATGTTTCAATAATTTTTCAGCCATGACCCGAGAAAAAAGTTCCAATCCTATCATTGGGTTGGCTGATAAAATCTGGATTTTCCCTAGATATGTATATAGGTATAGTTATTTGGACAATGTTCTGTTGACATGGAAAGGAAGTGAACCCCGAGTACAAAAGTACTTTGGGACTTGCACAATGGTCTGGCCTTTCCAGTACCAAACTACATGGAGCAATTCCCGAACAGATTATGGATCTGGGGGGGTTAATTGCTTTAAACCTTTCAAACCGTTTACGTGGGACCATTCACTTCCAAGATTGGGCCGTTAAATTCCATTGGGATTTCCCTTGATTTTTCTACAAACCCTTTTTCCCAAAAGCTTCTCCGCCCACCTTCTCCTCACCAACTGGCCCCAAGGGTTCTGGAAGCTTGGCTCGTCCGACAAGTTGGA | |||||||||
gi|188372378|gb|EY663077.1|EY663077 CS00-C1-101-051-C05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) GGACCTTTGGGGATATTTGGT EST sequence (targeted fragment marked with yellow): TTTCTCGACCCACGCGTCCGCAGCCGGTGTGTCTTCTTTTGGAGAGCCAAAAGTGATACTTGAAGTGCCCTCTGAAAATGAGGTTGTTAAACGAACAGTTGATTTGGAATCTGAAAACAATCAAAATGCCGCTCAAAAATGTAAACAATCAGTGTCTGAAGACGGGATTCATGCTGCTAGGAAGAGAAGGGTTGATGTAGATTGTGTTGATCCATCAGAATTGCTAATGCAAAACAACAAGAGGAGGAAGCAACAAGAAGACTTTCCCAGAAATTCCTCTGAAGAGGCCATTAACCACGGTGCAGTTGCTGAACAATCAAATCTACCAGAGGATCAACATACATTGACCTCAAAAAAACAAATCAAATGTTCCCGAGGGTCTGCATACATTGACTTCAAACAATCACACCCAAGGAGGTAACGAAGAGGCCAGCATACTAATTGTGGATAAGATCATTAAGATTTCTGAAGTGACTTGTGAAATGCCTGATGCTGACAACTTCATCAATCAAGAAAAAATAGATGGTTCGCAGAATTCTGTTGCGGAATCAGTTCAAGATATTGTTAAAGTTGGAGGTACAAATGATCATTCAACTCCTGCCCATACAGATGATNGTGTCCTTCCATATGTATCTGAGATAGACGGAATGGGTACAGAGAAGCAAATGGGAAATGTGAAGGATCTTACTGAGTGTGGTCAGGCTCAGGTACTAATGGTCTTACATACTTCCTTTTTGGATATAATACTGGCCTATGATNCTTGNTCGCTATTTCTGCATGATCTACTTGNGNNGTTATATGATGGGGATAAGTTGCCTTCTGTTACCATCCTAATCAAATAATAAGAATGCTGCCTATACCCATCTGTCCTTTTTGAAAAAAAAAAAAAAAGGGCGGCCCGTTC | |||||||||
gi|188303476|gb|EY744512.1|EY744512 CS00-C5-003-009-D10-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA se GGACCTTTGGGGATATTTGGT EST sequence (targeted fragment marked with yellow): CCACGCGTCCGATCGCAACTCTTCAAGCCAATGTTGACCGTCCAATAATTTGCTTCTTTGCTTCATTCAAAAATCCATTAAAACTCTCTGATAACGCAAACGAAACCAAAACCAGAAACACGCGAAACAAAAATTCAAAAATCCAAACTTTGTTTCGGTTTTGGTTTTGCATTTGATCAATTAATCAGTCTCTCTCTCCCTCTTCCTCTCCATGGCGTCGCTTGGCATTCATTACGGCGGTGGTGGAGGAGGAGGAGCAGGAGCGACGTTTTCGTCGAACCGCCGCGGAACGATTACGAAAATTCGTTCTCCGATTGCGTCATTGAATGTGACGCCGGCGATGAGCGAAAATAGGAAATGTCACGCGATGCCGATTCCGATATCGTCCTCGCGTGCGGATATTGATCTGGAGGAACCGAAGCGGAAACGAGATGCGGAGCGTTTGGAGCGACAATGTGATAGACAAGTTGGATGAAGGATTTCCGTCTTGGAGATCGTCGAGAAATTACGGGAGACGCGGCTATTGCGGAAAGGTGAATTCGGAAGAGAGACAGAGCCGAATACGAAGACGATCACAATCAGACAGGCACTAGCACAAATCAAAGAGACCTGCACCAACCATCAACAGGGCGGCCCGGCACAGCTCACGCAGCCCCGAAGTGCCCTAAGGTCAGTTGGCCGACTTCGCAAGGCTAGGCGCGCAGACCCTCGCAGTCGCAGGCGGTGTCACACAATGCTCTCACGTCGACCCAACAAGGCGACGATGTGCGGCGGACAAGATGGCGCAAAAAGCAGGTGACAAGCCGATCGAGAGCTCACCGGCAGCGTTCGCTAGGTCCCCAACAAATTTACCTAAAGGTCCATAACCTGCCGGACCCCGCCCCCCGCCACACGACACCTAACGCACCCACAGCGGCACGGATCAAAAAGTCCAGACTGATCAAACACCGGAAAGACAGGATCATACGACACCTAAGAAGCAGACGCGAGTCATCGACACACCTACACGGTATCACGCGCACACACCAGATGA | |||||||||
gi|188455784|gb|EY676912.1|EY676912 CS00-C1-401-028-E04-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA se GGACCTTTGGGGATATTTGGT EST sequence (targeted fragment marked with yellow): CGGACGCGTGGGCTGTCCTGTTATATTTTAGCCTAAATTACAAGCAGATTTTACTTCCCAAAACAGCCAGGCAAAAATTGGTTTGATACAGGAGTGTTATAACTAATAAGCTGACCTAGTTGGTCAATTAGGTGACCTTAACTGTAGTTGGGGAAATTCTAAGCTGAGCAAAGAAATGCTGGCAGCTTGCATTCAGCTGGAATGAAGAACTCGCAGAGCACCCAAGAAATACAATCGTCGACCCAAGTTTCACATGAATCCCAAAGTGACCAACAGAACAACCAAACAACAGAGGCTCCTTTGGCAGATTCTGGTTCAATATCTGCTTCGAGTAATGATAGCAGAAAGGTTTCACGCCAAGATATTGAACTTGTCCAGAACTTAATAGAACGGTGTCTACAATTATATATGAATAGAGACGAGGTGGTGAAGACCCTCTTGACTCGTGCAAGGATAGATCCTGGATTTACAACTTTGGTGTGGCAGAAGTTGGAAGAAGAAAACGCTGATTTCTTCAGGGCCTATTACATAAGGCTGAAGCCAAAGAAGCAAATCCTTTTTTTCAATCATTTGCTTGAGCATCCATATCATCTCATGAAGTACCCAGTACCCCAAAAGGTCCCCCTGGCTCCCCATGCAGAATGGGATTCATCCCCTGGCCCGTTAACAACTTACCTATGGGAAAACCTGGTCCTTCCACAACCCCCCAATACCCACCACCAGGGCAACCCCCTTTTTTGAGTCCCTTGAACCCCGGGAAACCTCCAAGTTTTTCCTTGGGGGGTCAAATTGGAATCCCCTGGCCCCCGGGACATTTTTTTTTTCCCAATGGGGGAAATAAAATTTTCTGGGGGGAAAGATATTGGGGGGATGGGGGGACCCCACTGGGCCCCACCCAAAAGAATAAACCCCCCCCTGTGTTTTTTCCCCCCCCCCCCAACCGGTGGGGGGGCGGGGGGGCTTCCCCCCCACTGGGTGTGTGAAAAAAAAAAATGGGGGGGCCGCCGAGGGGGA | |||||||||
gi|188287081|gb|EY728103.1|EY728103 CS00-C3-703-110-F01-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cD GGACCTTTGGGGATATTTGGT EST sequence (targeted fragment marked with yellow): CAAGATAGACCCAAGCGACAACAAACTTAACGACTGCGGCTCTGCCCCCTTCCCCATATATCCCCCAACAGAAAAAAACACACACAAACCAAAACCAATGGCCGCCGCCGCCCGTCCTCTTGTAACCGTCCAGTCTTTGGAAGGTGACATGGCCACCGACGCAAGCTCCACCGTCCCCTTGCCCGATGTCGTGAAGGCCTCTATCCAACACGACATCGTGAGCTTCGATCACTCTAACATCTAAAAAGAACAACCGCAAACCTTACACCGATACAAAAAAAGCAGGGCTGCAGAAATAAACCGAATCATGGGAGAAAGGTCGAGACAGATCACATATACCCAAAGTTCCCGAAAGCAGAGCCCACAGCACCAGCCGGAGGAACGAAGGGCAAAAAAACAGACGGAGGAAGCGACAAGCAAAGAAAAAAAGAAAAACACAAAAAAAGAAAAAGAAAAAAAAAAGTACAGACAGAAACAACTAAAGACAGAGAAACAAACACAAAAGAAGAAACGACAAGCACAAGGAGAGAGAAAAAAAAAGAGAACAAAGGACAAAAAAGAGAAAAAAGAAAGACGAAAGAACAGAAAAAAGAAGAAGAACAAAGAAAAAGGAAAAAAGAGGCAAAAGAAACGAGAGGAGAAAACAACAAACCGAAAATAAAAGCGTAGAACAATATAGCGGACTGCAAAAGCAACGAAACAAAAAAAACGAAAGAACGAGAAGAAAAAACCACAAAACCCAAACACAAGAGCGAACACGAGAAAAACACAAAAGAAACCAGAAGAGACACAAAGGGAGCCAGAAAGAAGAGATGCAGAGAGAAAGGAAGACACAGAAAAACAGAGCACAATTGACAAAACACCCGAAAAAGAAGAACACAAAGAAACAGGAAAGGAAAAGAAAAGAACAGAAACAGCAAAAAAGCCAAACAAAAACAGAAAAACAAAACCATACACAAAAGACAAGACACACA | |||||||||
gi|188446239|gb|EY743799.1|EY743799 CS00-C3-705-108-B08-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cD GGACCTTTGGGGATATTTGGT EST sequence (targeted fragment marked with yellow): CCCACGCTTCCGCTCGAACCGCGATCTATCAAATAATTGGATCGGTCAATATCAAGGGTAATCTATACATTGTAATTGAAACGACTTGACCACAGCAGCTCTACCCACATGGGCTCCCGCTTAACGTGGTAACGAGCAAGGCGTGTACTCGAATTTTCGGGCCGTACACAAAACTACTCACCTAGGGACCTTGCTTCTCATACACATTTTAATCCTAAAACAGATCGACCAGATACCAAATATGAATTACAGAAAAGGAACCTCCGGCATGACCTAGAATACCGTGAACTGAGACGTTTCTCATCTAATGATAAATCCTACTATGATGACAGAGATCGCCGGAATAGTAGCCCTCTTTTGTTGTCCGGCACAAAAAGGGATATAGAAGACCGGGCTGCTCCCACGAATCACAAGATGCTGAAGAATTCTGATGCCAAAGTCAAAGCCAGAGATGACAGTGTAAATGATTGACAACATATGACGAGGATGATACTCGAAACACTTTTTGCCCGATCCTGGAACTATTAATTAAAGGGAAAAACCCATGGGTAAGCTCCGGAAGGAACATAGAATCGGGGAAAAAAAAATTCTACTGCCTAGGAAATCAAATCTTCCTTTTATGAAAATCCATTGCTTAAATACACCAACAACTTTGTATAGTGAAAAATAGAGTAGAAAAACTATTTGAGTTATTCAGAGACACTAACCATTGTTGAAACTAGAAAAATCACAGTGTTTCATAAAATTGAAAAAAATATCAAAGAATATAAGAAAAAAAAAAAGATTAAAAAAAAAAAATATGGAATCATGTATCCCCAAAGGTCATTCAAAGAAGCGCGAGGGTTCTAGATTTTTCCATTGTAATGCTCCAATTACAAAAAAAAAATAAGATTAAATAACCATAATATCATTGAAATAAAAACGTATAATACCAAGGACACACACACATTAATCAGTTGGGGGACAATTTATGGCTAATA | |||||||||
gi|188445607|gb|EY730017.1|EY730017 CS00-C3-704-024-E02-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cD GGACCTTTGGGGATATTTGGT EST sequence (targeted fragment marked with yellow): CCACGCGTCCGCTTGAACGCGCGAAATCCAAAAGAATGGCGAGTCAGAACGACGACGCTTTGAAGCCGTCTTCGATGCCAGCGAATTGGGTGGCACGCCCCCTTCCCCGAAGGACAAAATCCCCAAAGGTCCTGGCCTTTCCCTGATTCCCCCCTATTTCATGATGGAATGAAAGGATGGAATTGTTGCCAGAAGGAGAATCCTGAATTCCGCTTATTTTTGGAAATTCCCGGATGTTAGAAAGGGTAACACACCACTGAGAAACCCGTGTTAACTAAGCCGGGCGCTACTTCAAAAACTCCAGCTCCAGCTCCTGGTCCTTCAACAACTCTTGGGTCCAGCACTCCATCTAAAGAACTTTGCTCACGATGTCTACAGGGTTTCTTTTGCTCTGATCACGGGTCACAAGCCCCAGAACAGACCACTTATGCCCCCCCTGTACCTGCTGGAAGTAATGTAGCTGCTGAGGTGCCTCCTGTTCCACTGAAGAAGAAAATTGGTATTAACGAGCCTCACATCTGTCAAAATAATGGATGTGGCGGAACTTTCATAGAAAAGGATGATCATGAGACTGCATGCAGTTATCATCCTGGACCTGCTGTGTTTCATGATCGGATGAGAGGGTGGGAGTGTTGTGACATTCATGTGAAGGAATTGATGAATTCATGGGCCTTCCGCATGCCCCCAGGGATGGGGTGAGGCTAATCTATCATCCTGACTCCTGAGTAGTAAATGGGAGGAGGGGTTGGTGTTCTGGTAACCCTAAACTCTGGTTTGACAGGTCATCTGCCTATTGAATGAGTTTTAATAGCACTTGTGGAGTCTGTTGCGTATAAGACGTGNCGGTTCGGAGGGTGGGCCGGCGATGGGGGGCCGGGGAGAAAAA | |||||||||
gi|188348594|gb|EY694629.1|EY694629 CS00-C3-700-027-F04-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cD GGACCTTTGGGGATATTTGGT EST sequence (targeted fragment marked with yellow): CCACGCGTCCGATACATTGACCTCACAAAACAAATCAAATGTTCCCGAGGGTCTGCATACATTGACTTCAAACAATCACACCCAAGGAGGTAACGAAGAGGCCAGCATACTAATTGTGGATAAGATCATTAAGATTTCTGAAGTGACTTGTGAAATGCCTGATGCTGACAACTTCATCAATCAAGAAAAAATAGATGGTTCGCAGAATTCTGTTGCGGAATCAGTTCAAGATATTGTTAAAGTTGGAGGTACAAATGATCATTCAACTCCTGCCCATACAGATGATGTTGTCCTTCCATATGTATCTGAGATAGACGGAATGGTACAAGAGAAGCAAATGGGAAATGTGAAGGATCTTACTGAGTGTGGTCAGGCTCAGAATGAAATAGGTGAACACAAGCTAGAATGTGAGCTTGTCCAGTCAGACAACAGTAAGAAGAACAAAGAGCTAATTGCATACAGGACAAGATCAAAACAGAAGAAGTAGAATTTTGGAGCAGCTACATTTTATTGCTTGAATGCTGGATCTGGCTTGGCTTGCACTGAAGTACCTATCTTCCTCTTCCTGGTTTTGTTATTCGTCAAGTGATGGTATAGTTAACAAATTTGTGCACCAATTACAATTTCCCTCTTATGATGTGATTCAGGTTATGGAAGGTGATTAATATACTGANGGTTTTAGTTGATATGATTTGCGACTGCCCTTTTAGCGGCTGTGGNCCAAATTGTANATGACTAAGGTAACTGGTATCTTTGTTAAAAATTTGTAAATTTTTGTCCATCCTAAAAA | |||||||||
gi|188424764|gb|EY688314.1|EY688314 CS00-C2-003-063-A12-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequ GGACCTTTGGGGATATTTGGT EST sequence (targeted fragment marked with yellow): AATTCCTCTGAAGAGGCCCCCATTAACGGCGCAGTTGCTGAACAATCAAATCTACCACACCCTTAAAATACATTGACCTCAAAAAACAAATCAAATGTTCCCGAGGGTCTGCATACATTGACTTCAAACAATCCCCCCCAAGGAGGTAACGAAGAGGCCAGCATACTAATTGTGGATAAGATCATTAACATTTCTGAACTGACTTGTGAAATGGCTGATGCTGACAACTTCATCAACCAAGAACACATACATGGCCTCCACAATCCTCAAACCCAATACCCAAAGGAGACCGCCGCAAACAGACGAACACCTACCAAACCCGCCCCCCGCCGTCAACGCCACGGGCGGGCCCACCGAGAGCCAACACCCCGCCCCCCCCACCCCACCCACCCGCGCGCAGCAGGGGGGCCCCCCCCCTCACCACCACCCTCACACCACACTCCCAACATCCAAACACACCGCACCCACCAGCAAGAAACGCAGGGGAGCCCCGCAAAGAAAGCCACCAAACACACGCCCCGACCGAGCCCCGCCCGGAACGGCCGGGGCGAGCCAGCCACGCCCGAGACCCACAACCGCACAACCCAACAAGCAACAGGCACCCCGTCGAGGCCCAACAGAACAGCAAGTCAAGAGCGCACCCCAAACACAGCAGAGACACCCGCACGCAGTCACCCCCACGCCACCGACGCACGCCCCCACCAGTCCCCCCATCCACCCCCCCACAGACGCACAAGACACACAACAACCGACCAACACAAGCACCCACCACACAGACCACCAAGAACAACCGCACGCCAAAAAAAGAGAACGCACCAGGAAGGGCGAAAGAACAGAAGACAGACGCCACACGA | |||||||||