| mature miRNA: TCATTTTTGCGTGCAATGATCC species: Citrus sinensis database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|55404462|gb|CV718536.1|CV718536 UCRCS08_0010K08_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensi TCATTTTTGCGTGCAATGATCC EST sequence (targeted fragment marked with yellow): ATTGTATAGTCTGAACGTCATATAATGTATAATGTATAAATACTGTCACCTATGGTTCTGAAGGTGATGTAAGTCTTCAGCGACGTTTAATTCACTCTGAAATCTAAGAAAAACGCCTAGACCTTATTTTTGCTCGGAATCAGTAAAACTAATCCAGAGTAAATGTTACAAAATCCCCGATGCTAGTTTTCAAAACCTTCAAATGAATTCATTTTTCGCTAACTAACCAGAGGGATGTGGTTGGTATCTCTGGTCTCACTGGGGCTTGATTGTTGCCGGACTGGAGAAATTCAAAGTACTTTTCCCATTTGTTGTCCCGGAAACTTTCGGCTCTTTATGCATAATAAATACAAAATTTCTTTTCCAAGCCTTTACCACAGACAAAATTATTCTTCCTGGGAATTCACTATCGTGACTGATCCACTTAAAACCAAGAAAATTGATGATCAGTCTCTTAAATTTATCACAGAAATAGTTCTTAAAAGCCATAAAGAAGGGAACAAATCCCTCCTATTGATAGCACTGGTCTCTTCACAAGGCCAACTCACGAGTCAAATCATTTTTGCGTGAATGATCCAGATCCCCGTTAACAAAAATTAGAATTTTTTTTTCTATTTTTCAAACCAATAAACATGAATATTTGTAAATTAAAAAGAAAGTTGAGTAAGAGAGCAAATTCGGGATCATTGCACGCAAAAATGATGCAAATCGACGAGTTGGAATTGTGAAGCAACC | |||||||||
gi|188389680|gb|EY710643.1|EY710643 CS00-C3-701-083-E09-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cD TCATTTTTGCGTGCAATGATCC EST sequence (targeted fragment marked with yellow): TTCATAATTTATTTAATTATTTATTTTTAGATCATCTATTCTTCTGGTCTTCTCTATCAGCGCTTACATATAATTCAGAAGCATATATATACACACACACACATACATATTCCGAAGCTTTATTAGCTTTGCTTATCAAGTTGATCAGATAATCTTGTGATTCAGAGGATGATGGAGTTATTTGTGCTGGGTTGTACGGGAGTTGTGGTGTTCCTTCATGGAGCCAATTTTTTCTTCCATGTTCTCTCCCAGCATCTCGCCGTCCGTTCTCTCAGTTTTCTGGGGTTTGTTGGATGGTAGAGCATAAGAAGAAGTGAAGCCGGACCCGCAACTAATTGTATTGCACTTGAAGTAGGCTGCAGATAGCCTTGCACCAGCCGTCCCGCTTTTGATTCGCGTACATTTCATGATCTATTCCTTTGATAATTAAAAAATCGTTAAAACTAATTTTGAAAGTAGAATCCATAGATCAGGGAGAACAAAAAAGAATGGAAGGGGTGTGATCGGAAATTGGTTGATGGGACAAGCAACACAACTGGATTGGGGATATTTTAATAGTAAGAACAAAGGATAAGAGAAAAAGAAATATGAGAGAGAGGAAAAAGCATGAAATATAAGATGGATCAAGGCTAGGCGAGGAGAAGAAAGAAAAAGAAGAGAGAGGAAAACGAAGGGGACAGCAAAAAGCAAAATAATGAGGGCGAGAACAGGCGACGGGACAGCGACGGCGAAGGAAGAAGGAAAGAAACAGAAGAGACACGCCCCGCACTGATGAGACAGCGCAAAAGAGAGGAAAGGCCTGAAGAAGGCGGGACTAGGAACGAAAGCAGAGGCGCACAGGGAAACGAAAAACGTACACAGATACAAAGGCCAGGGCGCGCGACAGTGAGAGAAACAAAGGGCTAGCGACGCGGAGGCAAACGAGACCGCAAGGACGAAGCGATCCAACGGACGCGCCAACTGAGAAGGCAGCAGAGGCGAAACNGTGGGGCTACGAACGGATGATCGAACGCGAAAATGAGAAAAAACGGACAGACGAAAGAGAA | |||||||||
gi|188435050|gb|EY703412.1|EY703412 CS00-C3-701-019-C06-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cD TCATTTTTGCGTGCAATGATCC EST sequence (targeted fragment marked with yellow): CCACGCGTCCGAGCTAAAAACCTANAAAATCTAAAATATATTTTCTGAGTTTCTCAGCCGCCAAAGCAAGTCCCAATATCGCCTCTCACGTCTGGGGAAGGTGCTGGTTGCTTCACAATTCCAACTCGTCGATTTGCATCATTTTTGCGTGCAATGATCCCGAATTTGCTCTCTTACTCAACTTTCTTTTTAATTTACAAATATTCATGTTTATTGGTTTGAAAAATAGGAAAAAAAAATTCTAATTTTTGTTAACGGGGATCTGGATCATTCACGCAAAAATGATTTGACTCGTGAGTTGGCCTTGTGAAGAGACCAGCGCTATCAATAGGAGGGATTTGTTCCCTTCTTTATGGCTTTTAAGGGACTTGGAAAGGCAATAATATGGAAACAGTAAACTTGAGAGGGGTATAAAACAAAAAGAGAGTAAGATTGAGGGGGCCAAACAGTGATTTCTGCCTTGAATGTGCGGAAAGTATTAATTATGCATAAATCTGTGTTCTTTCCGAAGCTTTTTTGGCTGCCACTTGTTCTTTCTGTGGTGTATTAGTTGATTGTACATTTTATACAACTGAGATTAGATGTGCTAAAAGTATTATTNTGCAAAAAAAGCACACATGTAACTCANNAANAAAGACTGGNGNAGGAACACCCATTAANNCTNTTANAATCTTCTGCCCTTNTGTGCCGACCTGGCCCTTTGGGACCCCTGGCGGGAATCTTGATGGGTCCGTTTTGGGCTTGAGGGATTCTTGTGGGTAAAAAAATGGTTGGGGGTGTCCCCTTCANAGGGGTTTTAGGTTTAAACCTCGAAACACTGTACCTCGCGGCCGGAGGGGAATTTAGCAATTTTCCACCCCAAAAGGGAACCGGGGNAAAC | |||||||||