| mature miRNA: TGGAGAAGCAGGGCACGTGC species: Citrus sinensis database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|188462128|gb|EY683361.1|EY683361 CS00-C1-650-049-C06-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRN TGGAGAAGCAGGGCACGTGC EST sequence (targeted fragment marked with yellow): CCCACGCGTCCGGAAAAAATCGGGGTTCAGACCAAGCTTATCCAAGAGGGAACAGGTCTAAAGCATTCAACAACAATAATAACAATCAAAGCCAGGCACCTAAGAGTGTAAGAGGAAGGGGGCCTAGAAAGTATGAACCTGCTAGGAAGAACAGCAATCATGCACCTCCACCACGGAACAAACAATTGGGGAAGCCTCTTGAGAAAACTTCACATACTAATTCAGGGAGAGCTTTCACACCCACGTCAAATTCTGAATCTGATACTGCCTCCAATAGGAAACAGGTGTTCGCATCTAGTCTGAGCTCTGCTTCTCCACCGTTTTATCCATCAGGCTCTTCCAATAAAGATATCAATTTAACACACAAAAAGGATGTACAATCTGGAAGTACGAGCAGGAATCTTCGAAATTCGAGCATAGATGAGAGTCTTTCTGTGCAACATGCAAATACAATGCAGCGAGGGAAAAATATAGCTGATGTCTGCACGGACAGGCTTTATATCAATGATTCTAGTTCTTCATCTGTTATTAAGCCTCTGGACAATCTACAAATTCCACCTTCTCAGTCCCGACCTCAAGGACGAGGTGTAGATGTCCCTCAGCAAATAGCTTATCAACCAGCACCACCTCATAACCAAGCCAATAGAGCTTCTTTAACACAACAACTAGCTGTTTCGGCGAAGTCCTGGGTCAAAATCGTATTCAAACTTCTGGACAACCAGCTACTCCAGTGGTTAGGGCCAGCATTCCGGTAAGCAGTTCCCAAGCCTCTTCTCCCCCCAAAATCAGCTTCCGACATTAATTTAAATAATTTCGGGGGGAATGGAAATTCCCATCAAA | |||||||||
gi|188398229|gb|EY651872.1|EY651872 CS00-C1-100-027-A12-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequ TGGAGAAGCAGGGCACGTGC EST sequence (targeted fragment marked with yellow): AACAGCGTCTGAGTTCAGTTCTTTTTTCCTCAGAAACGAACGTTCTCTCATTTGCGCTTTCTTATGTTAAATTTGGATCCTGTTTATGAATCTGTGAGGAAAAATTGATGTGGGTGTGTTTGAAAATATTGATAGGTATTGAATTTGATAATTGAGATCTGAACAATGGCTAATAATGGAGAGAATCAAACGACTACTAAGCCGCCACCATTGCCATCTCCATTGAGATTCTCCAAATTCTTTCAGTCAAATATGAGAATTTTGGTGACTGGAGGAGCTGGATTCATTGGTTCTCACCTTGTTGACAAATTGATGGAAAATGAGAAAAATGAGGTGATTGTCGCTGATAACTACTTCACTGGCTCGAAGGACAATCTTAAGAAATGGATTGGTCACCCAAGATTTGAGCTCATTCGTCATGATGTGACAGAGCCATTGTTGATCGAGGTTGATCAGATTTACCACCTTGCATGCCCTGCTTCTCCGATTTTCTACAAGTATAATCCTGTAAAGACAATTAAGACAAATGTGATTGGCACCCTAAACATGCTANGACTTGCTAAGCGAGTTGGAGCAAGGATTTTACTCACATCAACTTCAGAGGTTTATGGTGATCCTCTTATTCACCCTCAACCTGAGACCTATTGGGGTAATGTCAATCCAATTGGGGTTCGTANCTGCTATGATGAGGGAAAGCGTGTGGCTGAAACTTTGATGTTTGATTATCATAGACAGCATGGGATACAAATCCGCATTGCTAGGATCTTTACACTCATGGACCACGCATGAATATTGATGATGGGCGTGTGGGGCNCAATTTCATTGCTCAGGCACTACGAGGTGAACCTTTGACTGTGCAAAAGCCTGGACACAAACTCCCAGTTCTT | |||||||||
gi|188296548|gb|EY711547.1|EY711547 CS00-C3-702-008-H12-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cD TGGAGAAGCAGGGCACGTGC EST sequence (targeted fragment marked with yellow): CTGGATGAGGGTGTCGGTCATTCTCTTTCATCTCCAACGTAACGTGTTGATAAAACAGAACTTCAGCCGGAGGGCGCGTCCGATTGCCCGTGGGAGGATCGGATCTTCGATTCCTTGACGTGTGAACGATGGTAGACGCGTTCGGAGCGATTGCCATACTGGTTTTCCATGCAGCATGGCGGTCGCCTTCACGCCGCCTGCCCGCGCCGCCGCGCGAGGCGATACGCTCAATCTTGACGCAACCTGAAACCTGCGCTTACCATTCATCGACCTAAAAGCGCCCATCTGGCGCCAAAGCGGCTTAACGCGGCGGTTTGGGATGCCAACGCGCGCACCCCAGCCGCCCCCCCCTGCGATCGCGGTTCCTGCCGCCTCTCCACGCACGCCCCTCCATGGTTGCCTCTGTCGTCATCCTCGGCATGCTCTGCGTGCACCTGTTCTGCTTCTGCGCCATGTTCCTGCTGATCAGCACCCGGCTGGGCGGCAGGAAGATGGGCACGGACGTGTTCGCCGCCGGCCACCTGCTGCTGGGCGTGGCCTACATCCTGCAATTGCTGGGCGCCGAGCCGGGCTGGGGCGCGATGAATTTCCTCAACCACACCCTGACCCTGTGCGCCCCGGTCGCGTATGTGTTCGGGGCGCTACGGTTTTTCAACCGCCCCATCCCCGTGCTGTACCCCATGCTGGCGCTGGCCATTTTCTACACCGCGCTGCAAGTGCTGGTGCAAGCGGCGTGGGGCACGGAGGCGCGCCATGCGCTGCTGCCGGCCTCGTGCGCCCTGCTGTTCCTGGCGATGACGCTAGGGCTGCTGTACGGCGCGCGCACCTTCGCGCGCGACCTGCGCCTGGAGATGATCGTCTTCNCCATCCTGGTGGGGCGCATCTTGCCGCCTGACGCGGCGAAAGTCATGCTGATCT | |||||||||
gi|188241817|gb|EY744053.1|EY744053 CS00-C3-705-109-C07-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cD TGGAGAAGCAGGGCACGTGC EST sequence (targeted fragment marked with yellow): CGGACGCGTGGGTGATCTCACTATCCGAGCAGGAGTTGGTGGATTGTGATACATCATATAATGAAGGATGTAATGGTGGTTTGATGGACTATGCATTCGAGTTCATTATTGATAATGGAGGTATTGACACAGAAGAAGATTACCCCTACAAAGCCATTGATGGTAGCTGTGACACATATCGGAAAAATGCCAAAGTAGTTACAATTGATGACTATGAAGATGTTCCCCTAAATGACGAGAAAGCTTTGCAAAAGGCAGTTGCAAATCAACCCGTGAGTGTTGCCATTGAAGGAGGTGGCATGGCATTCCAGTTATATGAATCGGGTATATTTACGGGAAGATGTGGGACATCTCTGGACCATGGTGTTACTGCTGTTGGATATGGCACAGAAAATGGAGCTGATTACTGGATTGTGAAGAATTCATGGGGCAGTAGCTGGGGAGAAGGCTGGCTATATTAGGAATGGAGCGTAACGTGGCTGGCACTCTCACGGGCAAGTGTGGAATTGCCATGGAGGCCTCATAATCCCATAAAGAAAGGGCAAAATCCTCCCAACCCTGGAACGTCCCCTCCTTCTCCAACAAAGCCTCCTGGCTGGGGGTGAAAATTTATTTACTCCTTTGCCCCGGAAAGCCACCACTTTGGTGCTGGTGTCCTTTTGATAATGGTAACTCTTGGGTTTGGCTGGGGGTAGGCCTGCCCGCTTTGGGGGCTTGCCCCCCGGTGGGGAAAAACCCATAATAACCTGGCTGCCCCCCCATTGGAATAATACCCCATCTGAAAAGGGTTCTGGGTGGGAACCGGCGTGGGAGGAACAGGGGCACCCCCCTTTGGGGGAAGGGGGGGGGATTTAACAAACACCCCCCCCCGGGCAATAACTCTTTTCAGGGGGGGCCGCTGGGAAAATAAAAGGGGGGGGGGAAAAAAGCAAACTAGGGTTTTAAATTTATATAATGTTGGGCGCGGTTATGGATGAAAACAACGAAAGGAGAAGGGGCGCCCCACGGAGAGGGGGGGAAATAAAGGAAAAAAAT | |||||||||
gi|188312344|gb|EY756980.1|EY756980 CS13-C1-001-015-H06-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequenc TGGAGAAGCAGGGCACGTGC EST sequence (targeted fragment marked with yellow): CCACGCGTCCGCAAAGCTGTCAAGTTCATAGATGCAAAGCACTTCAATGTGCCATATGGACATGCGGCAGTTGAGCTTGTTGCTGGTAGAGAAAGTGCCATTGCTCAAATTCTAAGAACTGTTCCCAACAAAGAGTACAATCTCACATTCACAATTGGAGATGCAAAGAATGGCTGCCATGGATCAATGAGGGTTGAAGCATTTGCCGGCAAAGATACAGTGGCTGTTCCATTTGAATCAAAGGGAAAAGGTGGGTTCAAGAGTGCCAGTCTCAAGTTCAAAGCCATCGCTGCAAGGACAAGAATCACATTCTTCAGCACTTACTACCACACCAAGATTAATGACTTTGGATCTCTTTGTGGCCCTGTCCTCGATGAAGTTAGAGTACTTTCTATTAGATTTTAAAGATTTTTGCAGCTGTTGTATGATCCCACTTCCACTTTTGTATATTTAGCCGTTATGAGGCACATGCTCTGCTTTTCCACGAGTCTTAAAAAGTATTTGGGATCTTCTGTGTTTTTTAGTTGTATTGTCGGTGGAAAAGAACTATAGATGGATAATGTTGGAATGAGGTATCAATTTTCTATACGAAGTCCGCTGATTTCGGAATTTAAATTATGTAAAAGAGACAGTGAGAGACTTTCTGATGGGAAATTTAATAACCAAAAAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|55936593|gb|CV887139.1|CV887139 UCRCS04_2_029D05_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cD TGGAGAAGCAGGGCACGTGC EST sequence (targeted fragment marked with yellow): CTTACACCAAAGGTTTTTGATGGTTGTTTTTCAGCTAGAGCTATCGGTGAAGTTGATTTGAACAAGTGTGAGCCCTGGGATTTGCCTCGGAGAGCTAAAATGGGTGAAAAGGAATGGTATTTTTTTTGTGTTAGGGACAGAAAGTACCCAACTGGATTGAGAACAAATAGAGCTACTGAAGCAGGTTACTGGAAAGCCACAGGCAAAGATAAGGAGATTTACAAAGCAAAAGCACTTGTGGGGATGAAGAAAACTTTGGTTTTTTACAGAGGAAGAGCCCCGAAAGGTCAAAAAACCAACTGGGTCATGCATGAATATCGTTTAGAAGGCAAATATTCTGCCTACGACCACCCCAAAACAGCCAAAAATGAGTGGGTGATTTGTAGGGTGTTTCAAAAGAGTGGTGGAGGAAAGAAAACACATATTCAAGGGATGGTGAAATTAGGCTCATTCGGGAACGGCATCGGCTCTTCTGCGTTGCCTCCATTGATGGATTCATCTCCTTACAATAGTGAAACGAGAACCACCATTAATGAAACCTCTCACGTGACCTGCTTCTCCGATGCCCTGGAGGACCAGAAAGCTCAGGAAGACATGATCGATAGCTTTAACAACTCTCTTTTAGCTTCTTCATCTTCCTCAAACCCTCACTCCGAAATCTCCCCTGCCTCAATTTTCTTTTCCAAATCCTCTTTTTCAAACTCACTCTACGCCGATCAAATCCTCCCACGTATTGCAAATATGCAATACCCAGATTCTTTTTTGATGCAAGACCAATCCATTTTGAAGATGTTGCTGGAGAATCATGGACCCAGCACGAAGAAAAATTCAAAAGCA | |||||||||
gi|57934145|gb|CX674518.1|CX674518 UCRCS10_6H12_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Cit TGGAGAAGCAGGGCACGTGC EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTGTCCGTTCTTTTGTATTCTCTGATTGCATTTAAAAATCAACACCTATTAAAAATAGGTTAACAGACAACAGAGTAAACAAGCGTCTCCACCCTATATGCACTATTCTCGCATCTTCTGGATTCCAACCCACCGTGCATAATCCACCCACATCAATGACCCCAAGAATGTGTTGCCAGTTCGAAAGGCAAAGCAAATTGCAGCAAGTATAATCTTGTTTTCGTGTAGCAATGGCTCTAGAATCCGTTGTTCAATAACTCCTGCAAGTACTTGGTACCTTAGGTTGCTAGAAACTGCCATGTAAACACCATATGCAACACTAGTTGAAATTATAGGCACATCCTCTGCTTCACCAGCAAAAGATGTATCGAGGGCCTTTCTTGCATTAATCAAAGCATTCGTTATGCCTACACCAACCAGAGAGGCACTGGTCCCGACTGCAAATAATTTCGCCCCATTACGCACTATTGCACCTATTCTCTGTATAAGGGAATACGATGTTCCAGTAAATGCCACCTGGAACGCATTATCAGGACAGTTGAAGAAGAACTTAGCAATTGGTCCTGTACTCATTGCAAGAGGAGGTCGAAGAGAAATAGTGGGAGCAGGAAGCCAGACAAGCATAAAATCTGCTATTATGGCCATTACCACATCAGCGAAAACAAAATCTAACTCCTTGGAAAAATTTTCTCTGCGTCTCTCCAATTCTGCAGCAGTCTTAGTGAAGACCCCAACT | |||||||||