| mature miRNA: TTGGATTGAAGGGAGCTCTA species: Citrus sinensis database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|57936004|gb|CX676163.1|CX676163 UCRCS08_67F02_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis TTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): TTTTTTTTGTAGAAGTAAATAAAAAGATGCCTCCATACATTCTTTTGTCCCCCTCTGTCTTCTTGTAAATGCCACCAATCTCCGCAAACTCTTCTGGTTTTGCCCGGTAGTGGGGCTTTATTGGAAATATTTGTAGAGATTGAAGACAATTTAACTCGAATCAAAAGAGACCTTGACAAAGAAAGAGAAAAGAGTTTAATTCAACTTGGACTGCCCACAATGACCCTATTGAGATTGAGAGATGGCATTGGCAAAGTCATTTGTGGGTCTTGGACTCTGCTCTTTTTGAAGAGAGGCTCTGGTGACGATGGTGATGATAGGACTGATGATGATGCCACTGACCATGAATCGTTTGAGCTTTCATCACAGCTAAACACAGTAGCATCAATCACGCCACCAGGGCTTCCAGGGATTGCTTCAAACTTGCGCTTGTGAGGATTACTATTAGCATTGGTTTTTGCATTAGCCAGCTCAAGAATCAACTTGTAACAGTCACTTACTTTTTCCTTGCTTATTTTAAGCACACCTAGAAGCTGGTTTTGATAATCAACGGGATTCACAGGCTCAACTTGGTCTATTATGTGCATCATTGTGGCAGTGGCCAACACTGAAGGAAGGTAACTTACAGATCTTGAATCAGAGACCAAAGTGAGAAGCAGACGCTCACATCTCTTGAGAAACTCCCAGTGAAGAGATGTCTTCAATCCAAGCCTTCTTATGATGTGGTCAAGAAATGAAATTGGAGTCACTGGATGCATCTTCCATTCAAGTGTTGAGAGCACCAAAAGCTCCATTCTTTGTATGGCTTTGGTCTCAAAAACATATTTTGCCCCCTCAACTTGAAGGTCTAAGAGAAGGGGCACTTGGGTTTCTTCAACTT | |||||||||
gi|61687621|gb|DN618521.1|DN618521 UCRCS11_02K23_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citru TTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): TTTTTTCCGGTTGGAACTCACTTTAATTCAATGACGACAAATTTATAGTAGCTTATACTATATTAAAATGCATATGAAGTTACATATACTTAACACACAAATTATACAAACTTACAAAACACATTTTCATGATGAACTTTCACTTGGATTTTTGTGCTGTGCTATATTTTTCAAATCCCTGTACATTCCTGAACAAGCAAATGAAATTTCGGACATTGCCTTAAAGAGCTCTGGCAGATGATTTCTCAGACTAGTCAAAGACTTTTCTCTTACTGCACCGCATTGCCTCTGGTAAGCTTCCTCCTCTTCTTCCAAACGCTTCTTCAACACATCCACCACAAATTTTCTCTCTGTAACAGCATCCTTGAGAGTGGTATCATCAGCATCCAATTCTTCTTGTGTTCTTCGTGTTATATACTTATTATACCAGTCTTCAAATTGCCTGGTCTTGCGAGAAAGCTCTTTCTTGGTTTCTTCACATCTTTCCTTCAATTTCATTTCTTCTTCTTGATGATGCATAATGGTATTTATGAGGGCAGCAAAGTTACCTATAGCACTTCTAGCTATCTCAT | |||||||||
gi|56587772|gb|CX073782.1|CX073782 UCRCS08_35B06_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis TTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): AGACATCAACAACCCTTTGAGCCATTTGAGCTCACATGTAATTGTTGCCATGGCACGATACTCGGCCATAGCAGAGGACTGCGCAACTGTGTGTTGTTTCTTAGATTTCCAGGATATAGGAGAGGATCCAAGCATGACAAACCACCCAGATAAAGAACGCCGAGATAGCGGGCAGCTTGCCTAATCAGAATCACACCACCCATAAAGTTGCAAGTCACAACTGATATTAAAACCACACCTTGACCAGGGTTACCTTCAGATAGCGAACTACCCACAGAGCTGATTCCCAATGTCGCTCCCGCGGTTGTTGCATAAATTGAGAAAGCAGATGAACTGAATAGGACAACTCTAGCCGTGTAGCGGAAAGATAAATTAATCTGCCTACGCGTCGTCGATATTTCACAAGATCAGAAAAATAAGGGCCTTCAGCCAAAGTTAGCTGATGATTCGGTTCCAAGGAAAATGGGGCCGGTTTTGCACCAAGTAGTCCAGCCTCAGAGATAATATCTAACACATACTTCCGTTGAGACAGGAAGATTCCTGTCGGATTTCTTGCAACTTCAATACCCAAAAAATATTTCAATGGACCAAAATCTTTTATATAAAAACAATCACTCAAATACATCTTGAACACTCGAATAGCTGCGCTGTTGTTTTCCGAAACAATTATATCGTCAACATACACAAGCACAAGTAGATGTATGCTATCCCGATACAAGGTGAAGAGAGAATAATCCGAGCTCGATTGAGCAAAGTCGTAAGTCTTCAAAGTCGCTACCAACTTTGCAAACCAGTAAAGTGGAGCTTGCTTTAATCCATATAATGAC | |||||||||
gi|188453271|gb|EY713247.1|EY713247 CS00-C3-702-028-G12-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cD TTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): CCCGTCCCGACCCACGCGTCCGCCTCACAGCCATGGCAACAGCTATCGTCAGAAGTGCAAAAAATTTTCGAAACCTCCATCAACGTTTTTATTTCCACACTCTTCTTACCAAATGCCGCCCGCCAATTCCGTCACCAACAATCGCCGATAATATTCAGCATCGAGCTCTCCCTTTAATCCAACAGGCTATACCTTTTGGTATTGGATTCCAATCTTTCGTGGCTGATCAAAGATTTTCAAGCACCAGTACAACAACTGGCACCGTTCAATCAGGTCATTCAAAACCTAATTCTGAAGGAGGCGACAAGTCTGGAGACTCGAATCAGAGCAAAAGCGATACTGGGAAACCAATTCGCGGCGGGCCTATATCGTGGTTGAGTTTTCTGTTGCTGGCTCTAACGGGAGCTGGAATAATATGGTACTATGACAAGGAAAAGAAGCAACATATTGAAGGTACATTTCTATGAGATAAATAGTGCTTCTCAAGCAGTTAAACAAGGACCATCAGTGGGAAAAGCAGCCATCGGCGGGCCATTTAAACTTATAAACCATGATGGGAAGAATGTAACTGAGAAAGACTTTCTAGGGAAGTGGACGGTTATATACTTTGGCTTCACCCATTGCCCCGATATCTGCCCTGATGAGTTACAAAAACTAGCTGCTGCAGTTGATAAAATAAAGGAAAACTCAGGGATTGACATTGTGCCTGCTTTTATCTCTGTTGATCCTGAAAGAGATACCGCTGAGCAAGTGCGTGAATATGTCAAAAAGTTCCATCCCAAACTAATTGGGTTAACTGGGCAGCCGGATGAGATAACGAACCTCCCTCCCGCATACCGGAGTTACCTATATGAAAGACACCGAAGGAAAACTCGCGTTATTTTGTTGAATACTCCATAACGACGTTACTTAACGGGCCCTAAAATGGAAA | |||||||||
gi|61688769|gb|DN619669.1|DN619669 UCRCS11_04D23_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citru TTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): TTTTTTTTAGGAAAAGGGAGATCCTGGCATCCATTTGCATATTTTAACACGAAAAAGTACAAATTATTNCGGGTTCTTTTTTCCATTTGAAGATAAATTGAAGATTCCTATTCTCTCATTGAAGACTAAAGGAATACAGCCAAAAATATTGATAGTGCTTCAACGATTGATTGGCGTGTGCATTCGGTCAACAATCTTGTTAACAGCATCTCGAGACATCACCAATGTGTCGTGCTGCAGGATGCTGTAGACATTCAAACCAACTGAAGGTAGTACATTGACATAATGTAGATTTTGAGTAGCCAGCTTCAGCTTTTCATGTATGCAGCCACCATCACACAGCAAAACTTTCTTCGTATTTTCCATTTGATTGTAATAGTTCACAATGAACTTGGTTTTATGTGAGGGGACCTCCAAATCCTCAAAAACCAAGAGCTTTCCTTCGGCTGCTCGAGCAGATAGAGCAATCTTCAACCCAAGCCGCCGCACCTTCTTGTTCAACTTTATAGCATGGCTTCTGGGCTTTGGACCGTGCATTGTAGTACCACCCCTGAACTGGGGACCACGCAATGTCCCATGCCTAGCTCGACCAGTACCCTTCTGTCGCCAAGGCTTTTTCCAGTTCCAC | |||||||||
gi|188324037|gb|EY682547.1|EY682547 CS00-C1-650-034-A06-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRN TTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): CCACGCGTCCGTGATGAGTTAAGCCCGACTTGTGTATCTTCACTACTGGGCATCCAGATCGAGGGAGTGGCTGCAGGACTATGGCACACCATTTGCATTTCCAGCGATGGTGACGTGTATGCTTTTGGTGGGAATCAATTTGGGCAATTGGGAACTGGTGGTGATCAAGCAGAGACTCTCCCCAGGCTGTTGGATGCTCCAAGTTTGGAAAATGTACATTCAAAAAGTGTCTCTTGCGGGGCGCGTCACACTGCTGTAATTGCAGATGATGGAAAAGTGTTCTGCTGGGGATGGAACAAGTATGGCCAGCTTGGCTTGGGTGATGTCATTGATCGCAACATTCCATCTCAAGTTACTATCGAGGGTTGTGTACCTAGGAACGTGGCATGTGGCTGGTGGCATACCCTACTTCTTGCTGTGCCCCCTACTTGAGCATCTACCTATTTTAAGGCGTTGGCAACAGTTTTGTTAGATTAGCAGTCTGATTGATTGGTATATTGGTCGTTTGCATATATTTGATACAGTAGCTTGTACATGTATTCATGTGTGCTTCCTCTTCATTTATTCATGGTGAGGGCTCGCCGTGATTAGGTATATTGAAAATATGAATAATACTAATATGCACAAACATGATTTTGTCCATTGTGTATATTTCGATGTTAGTCACCTTGAACCATCCAATGTAATCATTTGCCAGGAGAAGTCACGCCGGTTGTATTGGAGGTTCCTTTAATCCAATCCGGTTCCCTCGGTATTTCTTGGTAAAAAAAAAAAAAAAGGGCCGGCCCCCTCAAAGGGATCCAACTTTACCTACCCCGTGGCATGCAAAGTCTTATCCTCTTTT | |||||||||
gi|209924563|gb|DC887985.1|DC887985 DC887985 EIC Citrus sinensis cDNA clone EIC1215 5', mRNA sequence TTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): GTAAATTAACTTANTAATGAATTAAAAAAAAAAAAAGAAAAAATAAAAAAAGCTAGCGTTCTTGATCTGGTGGGTGCATATCAGTAACTTGATTGTTGAGCCAATAAGAGCCCTTCAGTACCTGGAAGAAAGATAACGCAGAACAATATAAATATTTCAGGGGAAAGGCCAGTTAGAATAATGAGATGTCCATGAATGGAGCTCCCTTCACTCCAATACCAAAAAGATCAAGGTAGCCTCGTCTCCCAGTTCATGCAAACCCTTAGACTGCGCCACAGTATTGAGTCTGCGCAACCACGGGTGTTCATGGACTAGCAGCCGTGGCCTACCATCACCTCCTTTCAGACTTGGAGTTCAGAGAGCTCCATTAAAACCCTAATTGCAGTTTCTAAACTACTAAACAAACTTCATTGCACCAACATAATATTGTAATGCTAAAACTTCAAAGCTATGCATGAAGTAAAAGAATAAAATTC | |||||||||
gi|188314769|gb|EY665805.1|EY665805 CS00-C1-102-095-G05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) TTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): CCCACGCGTCCGCCCACGCCTTTTTCAAGCTCAAGAACCGGCTCTTACTCCTCGTCATTAGTATCGAAGAAGGCGAATAAGAAGAGCAATAAGCAGCTAAACGGCGGTGTTTTCACGGTGAGATCGAGCTTGGAGATTGCGGGGGCCACAGTGGGAGAGGTCACTGAAGTAAATAAGGATACTTTTTGGCCCATCGTTAAGGCCGCCGGTGATAAGACTGTTGTTCTTGATATGTACACTCAATGGTGTGGTCCTTGTAAAGTGATAGCTCCAAAATTTCAAGAATTAGCCAAAAAGTACTCCGATGTTATATTTCTAAAGCTTGATTGCAACCAAGAGAACAAGTCATTGGCGAAAGAGCTTGGAATAAGGGTTGTTCCTACTTTCAAGATTCTGAAAGACAATAAGGTTGTAAAGGAAGTGACGGGGGCCAAATTGGAAGACCTAGTTTTCGCCATTGATGCTGTTAGATCCGGTTGAAAATTCTTTCCTATTATTTTCTCCTGTAAACTATAAGCAATATGATCAGCAATGTGTACGTGCTTGAGAATAATTGATTGTTCCACTTGTATTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGCGGGCCGCTCTAAAGGAACCAAGGCTTACCACGGAGGGGATGGCGCGGTCATACCCTCTTCTACTAGGGGGCCCTTCAATTCAATTCTCAGGGCCCGTCGCTTTTGACACGTGGTGGTCTGGGAAAACCCCCGGTGCGTTCCCCGCTTCCACCAGCCCCTTGCGCCCACACCCCTCTTCTCGGCCATGTTGCTGCCATGCGGCGATATAGCCCCGCCTCTCGCTTCCCCCTTGTCCCGCTGTGTTCGACCCCCGCGGGCGTGCTGCTGGCCGACGACCCCGCCTTCCCTCT | |||||||||
gi|188466464|gb|EY705395.1|EY705395 CS00-C3-701-043-B03-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cD TTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): CCACGCGTCCGAACAAACTTCATATGTATTATAGCACAATTTTAGTGTACGAGAAGATGAAATCTGCTGGAATTGTTCTTGATTCTGGTTGCTATTGTCAGATTATGGAAGCTTATTATAAAATTGGCGACTCGGAAAAAGTAGCTGCTCTGTTTCTTGAATGTAAAAGTAGGAAGTTAGATTCAACTCCGTTTTCAACTCATATGTATAAGATTTTATGTGATTCGTTAGGGAAATCTGGTCGAGCTTTTGAAGCTCTCAAGTTCTTTAGGGATATGAAGGAAAAGGGTATTTTAGAGGACCCTTCAATCTATGCTTCTTTGATATGCTCTTTCGCGAGTATTACGGAAGTAAAGTTAGCCGAAGAGCTATTCAAAGAAGCAGAGGAGAAGGGAATGTTGAGGGATCCGGAAGTTTGTTTGAAACTCGTTTTGATGTATATTGAAGAAGGGTTGGTGGAGAAGACTCTTGACGTTGTTGAGTCTATGAAGAATGCAAAATTGAAGATTTCTGATTGCATTTCGTGTGCGATTGTTAATGGCTTCTCTAAAAGAAGAGATATTGGGCTGCTGTCAAGGTTATGAACAGCTGATCTCCCAGGCTGCATCCAGGAAAAGTGACCTATGCTTCAATCATAAATGCATATTGCCGAATAGCGTTGTATTCAAAACCGGAAAGGGATTCCTAAAGATCCAACAAAAGGGTTCCAATAATGGGGTTGGGGCATATTCAACCATGGGTGCAATGATTGGCAACACAGGAAGGAAAAAAAACCCAAGTGGCTTTGTGGCAAAATGAAACCAAAGGTGGGGAGCACAACTATGGAAAATCAATTCCCTAATGGACATGCGGGGGGGGGTAAAAAATTAGAACAGGGGGAAAAATTTGGAAAGAATTGGACAAAAA | |||||||||
gi|61687581|gb|DN618481.1|DN618481 UCRCS11_02K02_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citru TTGGATTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): TTTACTTATAAATGATAAAAACTTATATCCAACGTTGAAGCTGTAGCATTACATTGTTGAGCGTATGAATTTTTAAGATACAAAGAATGAATGGATAAGAGAAAATTGTCAAGATTGCCAAGATTGCAAGATAGCATGATTCAAGCCAAGTAGCTTTACATGTTGGAAGCTTCATTCTGATAAAGCATGTTCCGTTACAGTATGTTTATGCAGTACGGCAAAGCAAACCGACCGGCCAAAACTTGAATATTGAAAGCACAGGCACCGGAACAAGTTTAAGCCCACCATGGAGCTTCACCAGTTCTGAAATCTGTTTCCGTCCATGGAACGAAGACTACCTTACCATTTTCAACGTTGGCATGAGCCAATGCCAATGACAATGGAGCAGGCCCTCTCACAACTCTTCCTTGGTTATTGTATTGGGATCCGTGGCAGGGACAGATGAACTTGTTCTCAGCTGAATTCCATGGCACCACACATCCAAGGTGAGTGCAGACAGCATTGATTCCATATGATGCAAGTGTTTTGTCTTTTTCCACAACAAGGTAGGTTGGATCTCCCTTCAATCCTTCGGTGAGGGTTCGGTCCCCAGGGCCGTGCGTGTTAAGCCAATCAGCGGCAATGAT | |||||||||