miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: GGCAGAGCATGGATGGAACCA
species: Citrus unshiu
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|209939277|gb|DC901471.1|DC901471 DC901471 YJS Citrus unshiu cDNA clone YJS1938 5', mRNA sequence 

GGCAGAGCATGGATGGAACCA
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TCGTCTCGTACCTACCATCGT

EST sequence (targeted fragment marked with yellow):
TATATAAGAGTAATATTGCTCTTCCTCTATTACAATATACAAATCAAAATGATCACTTGGCACTATCCAAGTTGGGGACCAGTCAATTAGGACACCAGCAGCTCAAGTACATGACTGTCCTTAAAGACTCCTCTGATTGCTTGGCCTTGGGGTCTCTCATCAATTTGCTTGAAACCACCGCAGCAGAAGATGAAGAAGAAGAAGAAGAAAGCTTCTTTGATGATTGAGAAACTGATGATCTTATATTGTTCTTGGCATGTTGGTGTAATGATCTTAGGGTGTAGGTCCATCTACAGAACCCTTGATCTTTCATGGCCTCAACTGCTGCAACACTTGCTGCTACCATCCATGCTCTGCTTGTTGAACTCATCTTGAATCTATGTGAATGTCTCTCGGATACTCTTTCACTTTGCTTTGCTTTAGAAAATTTGATGTTTTGATGGC