| mature miRNA: GGCGTCACGTGACGCCTGGGC species: Coccomyxa sp. C-169 database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|282499840|gb|GW220337.1|GW220337 CBOZ2326.b1 CBOZ Coccomyxa sp. C-169 8kb Coccomyxa sp. C-169 cDNA clone CBOZ2326 5', mRNA se GGCGTCACGTGACGCCTGGGC EST sequence (targeted fragment marked with yellow): GTCCTGGCAAATTGAAGAGCCTTTAAAAATTCACCTGGCAGATAGACGTAGTCGATGTTCTGAGGGGCAATGCGGTTCACGACAGTCAGCACCGCTGCTCGCACTGGTTTAATCCGAGTGATCTGAAAGACTCGGGGTGGTGTCTGGCTGGTTCCCTACATCCATAGACACGTGCTATCGAACGTAATAATATATTTCAAAGTGAACATTTTGGCACCAGATCAGCGTACCGCATTGGCCCAGTATCAGTGTGACGTTGCTGGAGCACTTTGTGCCCTGAAATGTGAAGAACGCTCTTTAAACGGGTCTGGATGACAATCACAGCGAAGAGGATATCCGACCCCACGACAGACAAGCCGTACTTCATCCTCACGGAGCTTCTGGAGGACAAAGCTGATTTTGAGGAAAGTCAGATCAATGTCAGAATCACTGATGGCGCGCACTTTTGGCGCAAAGAGGGTCAGCGCAGGCTGTCACAGCCGGACAAATGGATGGCGAATACTTACAGAGCCATAACAAGCCCCACGGCAGAGAGCTTTGAGTATCAGTTTTCAGAACGGGATGGAAATCTGAAGTTCACCATCAGATGGCGGCAGCCTGGAATGACCGGGAGGGTCAAGGCAGACATAGTTCTTCAATTATGTGAGGGTCCGGAGCACATGCGCTCATTGCTGGACTGTCTCTTTGGCACCCTCAGTAGTCTCCAGGTGTCACATGACGCCCATGCAAAGAGCGTGGCAGACTTCAAGGA | |||||||||
gi|282524866|gb|GW245190.1|GW245190 CBPA7974.b1 CBPA Coccomyxa sp. C-169 2kb Coccomyxa sp. C-169 cDNA clone CBPA7974 5', mRNA se GGCGTCACGTGACGCCTGGGC EST sequence (targeted fragment marked with yellow): TGCTCCCTGACATTGACAATGACATTCGCATGAAGCTAAGACCGGATATTCTCAGAATTAGAGGGCTACCAGCAGGCGCAACGAACTTTGCGATTTCAAAGGACCAACGGGCGCGATATGAAGTACAGATTATCGAGGTTGGCTATTGTGCGGACACAAGATACAAAGAGAAAATGCAAGCTAAATTGTCACAACATGCACAGCTTGTGCAATACTTGCGCGACGCAGGGTGGAGGGTGCAAGACCCTTACGTATTTCTGTTTGGGGTTGCTGGCACTATTTAAAAACGGATTTGACACAGTTGCAAACAACTAGGTGTATCATCAAGCAACGCCAAAAAGACATCCACAAAGATTCATATTAATTCCGTGCAATGGGTGGACAAACTCGTGAAGACTCGACGCCACTTCTCAAGGAACCAGCCAACAAATGTAGGCGTCACGTGACGCCTGGGCTTTGTGATTAGGGGACATGGGTTTACCCATGCCCTCACGGTGGCGAGGAATATCATGCCCTTGGCACGATTGCCCTCTGTCTCCTTAATCACGCCCCAGGCCTCATCAGGGCGTCTATATTTCATTTTATTTTATTTTATGGGCATGTGCTAGCACAAATGAAAAAAAGGGGCTGACTCTAAAGGGGCTGCCCATGAAACCGGCAAATCACCTGCTGGGAGAAGTTCTGGTTGATGGCGGTGGCCTCCAGGGAGAGCTGCTGCATGCCGTTGATGTTGTCCTTGTCCTCGGGTATGGCCTCGGGGGACGTCTCAGCCACAATCAGCATGTCCAGGGACGAGCAGTTGCGCTT | |||||||||
gi|282524867|gb|GW245191.1|GW245191 CBPA7974.g1 CBPA Coccomyxa sp. C-169 2kb Coccomyxa sp. C-169 cDNA clone CBPA7974 3', mRNA se GGCGTCACGTGACGCCTGGGC EST sequence (targeted fragment marked with yellow): AGGAACCAGCCAACAAATGTAGGCGTCACGTGACGCCTGGGCTTTGTGATTAGGGGACATGGGTTTACCCATGCCCTCACGGTGGCGAGGAATATCATGCCCTTGGCACGATTGCCCTCTGTCTCCTTAATCACGCCCCAGGCCTCATCAGGGCGTCTATATTTCATTTTATTTTATTTTATGGGCATGTGCTAGCACAAATGAAAAAAAGGGGCTGACTCTAAAGGGGCTGCCCATGAAACCGGCAAATCACCTGCTGGGAGAAGTTCTGGTTGATGGCGGTGGCCTCCAGGGAGAGCTGCTGCATGCCGTTGATGTTGTCCTTGTCCTCGGGTATGGCCTCGGGGGACGTCTCAGCCACAATCAGCATGTCCAGGGACGAGCAGTTGCGCTTTAGGAATCTGGCAGCCTTCAAGGCATGAAGTTCACATGCAGCTTGTTTGCAGACGCACCTTGCCTTCGGCAGGAAAAGCGTGCAATAATAGTAATAATAATAATAATATATATATATTTTTTTGCTTAGTTTTAGGGGGGTCTATTTGTGTACGGATGTAAATCCCCCTACAGAACTAGAGGTGAACGCGCTGCCTTGAGGTGGGGACGCCTCTTGAGGTTGGTCAGCATTGAGCAGAATGGGTAAGTCTTGCTGATTGGTGTGAGAAGGCAAATGTAATTTCACATGGATAGTCATTATCATGTTAGCAGTGATTGGAGGCAATGTAAGCAATCAATGTCC | |||||||||
gi|282497943|gb|GW221305.1|GW221305 CBOZ2895.b1 CBOZ Coccomyxa sp. C-169 8kb Coccomyxa sp. C-169 cDNA clone CBOZ2895 5', mRNA se GGCGTCACGTGACGCCTGGGC EST sequence (targeted fragment marked with yellow): CTGGCTGGTTCCCTACATCCATAGACACGTGCTATCGAACGTAATAATATATTTCAAAGTGAACATTTTGGCACCAGATCAGCGTACCGCATTGGCCCAGTATCAGTGTGACGTTGCTGGAGCACTTTGTGCCCTGAAATGTGAAGAACGCTCTTTAAACGGGTCTGGATGACAATCACAGCGAAGAGGATATCCGACCCCACGACAGACAAGCCGTACTTCATCCTCACGGAGCTTCTGGAGGACAAAGCTGATTTTGAGGAAAGTCAGATCAATGTCAGAATCACTGATGGCGCGCACTTTTGGCGCAAAGAGGGTCAGCGCAGGCTGTCACAGCCGGACAAATGGATGGCGAATACTTACAGAGCCATAACAAGCCCCACGGCAGAGAGCTTTGAGTATCAGTTTTCAGAACGGGATGGAAATCTGAAGTTCACCATCAGATGGCGGCAGCCTGGAATGACCGGGAGGGTCAAGGCAGACATAGTTCTTCAATTATGTGAGGGTCCGGAGCACATGCGCTCATTGCTGGACTGTCTCTTTGGCACCCTCAGTAGTCTCCAGGTGTCACATGACGCCCATGCAAAGAGCGTGGCAGACTTCAAGGAGGAGGCCCTGAGGAACAGCAAGCTGGTGGAAGAGTATGCCACGCATAAGGAGGCACGCGAAGAAGAATTGTATGCCAAGTTTTCAGCTGTGCTCAACGAGAAGAA | |||||||||