| mature miRNA: CACCAAAGGCCTCTGCCCTTC species: Coffea canephora database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|82472832|gb|DV693004.1|DV693004 CGN-37060 Leaf Coffea canephora cDNA clone cccl17j18 5', mRNA sequence CACCAAAGGCCTCTGCCCTTC EST sequence (targeted fragment marked with yellow): GGAATTGCAATGAAAGTTGGAGGAGAAAGAGAGGGTGATTAACGGGTCGCTAAGTGAAACAGAGGGAGGTTGATGGTCTGGAGAATGGGAAGGTGGCTGTGGTGGAGGAGGATGTGGGCAGTGTGGTTGAGGGCCGAAAGAAGAATTGCGCTGCTCGACTTGAGGGGGAGTGGCCTGTGGTGGCTGTTTCTGCTGTCAGTGCTGTGGCTCTGACAGGGGTGCTGTGTTATCTTCATTACAAGAAAAGGTGAATTTCCGTAGTTTGAAGATGGAACAGAAGCTTGCAGGTTAGGGTTTTTGTTGCTGACCTTGAGTAAGGAAATGGCTCAATTTTGATGGTTTTTATGGTTGTGTCAGGCTTTATTATTATTAAGCTTTCTAGCT | |||||||||
gi|81290965|gb|DV665079.1|DV665079 CGN-2449 Pericarp Coffea canephora cDNA clone cccp23k5 5', mRNA sequence CACCAAAGGCCTCTGCCCTTC EST sequence (targeted fragment marked with yellow): GTCTACCGGGGCTTAGAATCCTACAATCCCAGACAAAAGGAGGTGGCTGCTTCGAAGAAGCTTCAAGGTTAGCAAATTTACATAATCGGGCACTCTACAACTTCTTGTCAAAAATGGAGGATCAATTGCAGGGGTTCAGATATTCAATTTGCGACTTCCATGGTGCTCTAAGACACAGAATGGATCACCCCTCCAGATTTGGATTCGAGGAAGGGAGAGCAGCATGTTGCGGAGCAGGACGATATAAAGGAATATACAGCTGTGGAGGGAAGAGGCCTATGGTGAAGGATTTCGAGCTGTGTGAGAATCCGAAGAAATATGTGTTTTGGGATTCTTATCATCTCACTGAGAGGGTCTACAGGCAGATGGCATCAGAAATGTGGAATGGATCCAGGAGAAGGGGGCGGCCTTACAGTCTCAAGCTCAAGGATTTATAGCGTTGTTATGAATGACCCTCTCAATTAATACTATGTTTAGATTACTGATCGAGACAAGATTATTTTGACAAGTATAATACTCCATGGAGCAATTTACCCAATTTTGTGGAAACGAGTTTACTGTTTATATCCATCTTGATCTCTTCTAATTAAAAAAAAAAAAAAAAAA | |||||||||