| mature miRNA: TTCCACAGCTTTCTTGAACT species: Coffea canephora database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|82447172|gb|DV673792.1|DV673792 CGN-9999 Seed of Middle Development Stage Coffea canephora cDNA clone cccs30w6l14 5', mRNA se TTCCACAGCTTTCTTGAACT EST sequence (targeted fragment marked with yellow): CTTGAATCTGCTGAAACTAGGATGCTGCCAGTACCAAAACGCAAGCCCGAAGCTACAAGGTCGTCTTTTGATTTAAATATGCCTGTGGAGGAGATGGAACAAGACAATGATTGTAATAGCAGTGACTATGACTCTGGCTCTGAGAATACAAAGGGGTGGTTGGAAGATTTCTTGGACCAAATGGATGAAAATGTGGCCTTCAAGCCTTTCGATTTTGATGCTCTTGCTCAGAAAGTTTTGAAGGAAATCAGCCTAGGATTCCAGAAGATAGTTGGATCTAACTTTCGCCTGGAGATTGAGTCAGAAATAGTGGTGCAGATACTTGCAGCTGCTTGGTTATCAGAGAGAAAGAAAGCTGTGGAGGATTGGATTGAAGGAGTTCTCTGTACGAGCTTTAAGGAAGCCTTACAAAGGTGCACCCGTACCCCTGTTGCTGCAAATGTGATGAA | |||||||||
gi|82479014|gb|DV699186.1|DV699186 CGN-44970 Seed of Late Development Stage Coffea canephora cDNA clone cccs46w22m20 5', mRNA se TTCCACAGCTTTCTTGAACT EST sequence (targeted fragment marked with yellow): AGAAAGACGAGGAAGGAGAAGTTGAAGAAGTAGATGAGGAGAAAGACAAGGATAAAAAGAAAAAGAAGAAGATAAAGGAGGTGACAAATGAATGGCAGCAAATTAACAAGCAGAAACCTCTCTGGCTTCGGAAGCCTGAAGAGGTTACCAAGGAGGAGTATGCAGCCTTCTACAAGAGCCTAACAAATGATTGGGAGGATCATCTTGCTGTGAAACACTTCTCTGTTGAAGGACAGCTGGAGTTCAAAGCTATTCTGTTTGTTCCAAAGAGGGCACCCTTTGATCTCTTTGATACACGGAAGAAGTTGAACAACATCAAGCTCTATGTCAGGAGGGTGTTCATCATGGAGAATTGTGAGGAGCTCATTCCTGAATACCTTGGATTCGTTAAAGGCGTGGTGGATTCGGATGATCTCCCACTAAATATATCTCGTGAGACGCTCCAACAGAACAAAATCCTGAAGGTCATCAGGAAGAATATTGTCAAGAAGTGCATTGAGATGTTCTTTGAAATTGCAGAGAACAAAGAGGATTATGCTAAGTTCTATGACGCCTTCTCCAAAAATATCAAATTGGGTATTCATGAAGACAGCCAAAACAGGGCAAAGCTTGCTGATCTTCTCAGGTATTACTCCACAAAGAGTGGGGATGAGTTGACCAGCTTGAAGGACTATGTCACAAGGGATGAAGGAAGGGCAGCAGGACATATATTATATAACCGGCGAGAGCAAGAAAGCTGTTGAG | |||||||||
gi|119330967|gb|EE200470.1|EE200470 CC-F01_019_L16 Cherry of different development stage Coffea canephora cDNA clone CC-F01_019_ TTCCACAGCTTTCTTGAACT EST sequence (targeted fragment marked with yellow): GCCACAGAAAAGAAATCCCAGAACATGACGACTCTTTCGTTGCTTCTCTTGTTTTCTTTGCTTTCTTTCTCATCAGCTGAGGACATGTCCATCCTGAGCTACGGTAACGCAAACCTAAAGGCGAGTGGCAGTGGGAGGACGGATGAAGAAGTGATGGCCTTGTACGAGGAATGGCTAGTGAAACATGGCAAGTCGTACAACGGCCTAGGAGAGAGAGATAAAAGGTTTGAAATTTTTAAGGATAATCTTAGGTACATCGACGAACAAAACAGCTTGCCCAACAGGACGTACCAGCTCGGGCTGAACCGATTTGCTGATCTGAGCAACGAGGAGTACCGTTCCACTTACTTGGGAACCCGCCCTGATCCCAAAAGGAGGTTGGCCAAGACTTCCAGCGATCGCTACCGTCCAAAAGTAGGTGATAGCGTGCTGAACTCCATTGACTGGAGAGAAAAAGGTGCTGTTCTTCCGGTCAAAGATCAGGGAAGCTGTGGGAGTTGCTGGGCCTTCTCAGCAGTTGCTGCCGTGGAAGGGATCAACCAGATTGTGACTGGTGANNTGATCTCCCTGTCTGAGCAAGAACTAGTGGATTGTGATACTTCTTATGAT | |||||||||
gi|119327761|gb|EE197264.1|EE197264 CC-F01_008_G13 Cherry of different development stage Coffea canephora cDNA clone CC-F01_008_ TTCCACAGCTTTCTTGAACT EST sequence (targeted fragment marked with yellow): CCACATTTCCCAACTCAGTCTTCTCCGGCCCTCCGCCACAGAAAAGAAATCCCAGAACATGACGACTCTTTCGTTGCTTCTCTTGTTTTCTTTGCTTTCTTTCTCATCAGCTGAGGACATGTCCATCCTGAGCTACGGTAACGCAAACCTAAAGGCGAGTGGCAGTGGGAGGACGGATGAAGAAGTGATGGCCTTGTACGAGGAATGGCTAGTGAAACATGGCAAGTCGTACAACGGCCTAGGAGAGAGAGATAAAAGGTTTGAAATTTTTAAGGATAATCTTAGGTACATCGACGAACAAAACAGCTTGCCCAACAGGACGTACCAGCTCGGGCTGAACCGATTTGCTGATCTGAGCAACGAGGAGTACCGTTCCACTTACTTGGGAACCCGCCCTGATCCCAAAAGGAGGTTGGCCAAGACTTCCAGCGATCGCTACCGTCCAAAAGTAGGTGATAGCGTGCCGAACTCCATTGACTGGAGAGAAAAAGGTGCTGTTCTTCCGGTCAANGATCAGGGAAGCTGTGGGAGTTGCTGGGCCTTCTCNNNAGTTGCTGCCGTNGAAGGG | |||||||||
gi|82472925|gb|DV693097.1|DV693097 CGN-37175 Leaf Coffea canephora cDNA clone cccl20o13 5', mRNA sequence TTCCACAGCTTTCTTGAACT EST sequence (targeted fragment marked with yellow): CAAGGGCCCTTTACTCGTAGCTTGCATGATTGCAAGCGTCCTCCTATTCGGTGGTCTTGTGATTGTCTTATGGCATCTCTGGGATAGACAAACTTCAGTAGAGGAGCAAACCAAGGATGCTGGGAAGATTGGCAGTGTTCAGCAGAATGGTCATGCAACGCATAAAAATGTTGGCCAGGAAAAATATGTTAGTTCCATTCTCTACGGTCAAAGACCAGATTTTTGAGAAATTTTTGGATCAATTTCAGAAAGCTGGGGAAGTGTGGATATTGGTGTGATTGTTTGTGGACCTTCAACTCTTCAGACAAGTGTTGCTAGGGAATGTAGAACTAAGAATTTGAAGAGAAGAAAGAATGAGCCAATATTCCATTTCAACAGCCACAGCTTCGACCTCTAGTCACCATCCCGTGCATACTGTATAAATTTTCTGTAGCTGTATGATGTATAGGAAGAATAAGTCCTTCCGTACGGACTTAATTATTAGCTTCTTGATTGCACATTACGGATATATAAATAGATGCATGTATATCTGAGTATGAAGATTATGTAGCTAAACTATTACCCCTACAGGGATTATAAATAGATGCATGTATGCTTGAGTATGAAGATTATGTAGCTAAACTATTACCCCTACAGGGATTATTTTGTTGTTCTAAATTAGTTCGTTTAACCAAGTTAGCACTCAAAAAAAAAAAAAAAAAA | |||||||||
gi|82482457|gb|DV702629.1|DV702629 CGN-49044 Seed of Late Development Stage Coffea canephora cDNA clone cccs46w28n6 5', mRNA seq TTCCACAGCTTTCTTGAACT EST sequence (targeted fragment marked with yellow): AGAACAAAGAGGATTATGCTAAGTTCTATGACGCCTTCTCCAAAAATATCAAATTGGGTATTCATGAAGACAGCCAAAACAGGGCAAAGCTTGCTGATCTTCTCAGGTATTACTCCACAAAGAGTGGGGATGAGTTGACCAGCTTGAAGGACTATGTCACAAGGATGAAGGAAGGGCAGCAGGACATATATTATATAACCGGCGAGAGCAAGAAAGCTGTTGAGAATTCTCCATTCTTGGAAAAGCTTAAAAGGAAAGGATACGAGGTGCTTTTCATGGTTGATGCCATTGACGAATATGCTGTTGCACAGTTGAAAGAGTATGATGGTAAAAAACTTGTTTCTGCAACAAAGGAAGGTTTAAAGCTCGATGAGTCTGAGGAAGAGAAAGCAGCAAGGGAGGAGAAGAAAAAGTCATTTGAGAATCTTTGCAAAGTAATGAAGGATATTCTTGGAGAGAGAATTGAGAAAGTGGTGGTTTCTGACAGGGTTGTTGATTCTCCTTGCTGCTTGGTCACTGGGGAATATGGCTGGACTACAAACATGGAGAGGATTTTGAAGGCTCAAGCATTAAGGGACACCAGCATGAGCGCTTACATGTCAAGCAAGAAAACAATGGAGATCAACCCTGACAATGGAATCATTAAGGAGCTTAGGAAGAGAGCCGAGGAAGATAAGAATGACAAATCAGTTAGAGACTTGGTGCTGCTGCTTTATGAGACTGCTTTGTTGACCTCTGGTTTCAGCCTTGATGATCCAAACCAATTTGGTTCAAGGATCCATAGGATGTTGAAATTGGGGCTTAGCATCGAGGAAAATGAGACCGATGATGA | |||||||||
gi|82462035|gb|DV688636.1|DV688636 CGN-31386 Leaf Coffea canephora cDNA clone cccl11m20 5', mRNA sequence TTCCACAGCTTTCTTGAACT EST sequence (targeted fragment marked with yellow): CTCTCTCTCTCTCTCTCTCTCGTGTGATATACTGGTACTACTAGTGTCTTTACAGTAAAACACTCGTCTCTTTTGTCATACAGAAAAAACCCTTTTAGGGTTAGATCCGATATTGCGTGCTTAGAGCCAGTTAGATATGGTCCTCTTCGTCTTATTCCACAGCTTTCTTGAACTGCATCTGGCTTTATCACTCCATGAATATGATTCTTGCAAGACTTCGGTGGAGGTGACGCGATGATGGCGGTTCAATAAAGCTGTGGGATGATACTAATAGGATCAACAAACTTCTCGCTCCGATTTTTTGGCTTTAGTTTTTAACTGCATGATATCTCAGGTTTTGTTTCTTTTTTCTCTTTTTTTTTTTCGGGCTTTCCCCTTCGTGTTCACAACAATAGTCACCGGCTTCTATAGTCTGGCCCGGAACCTGTAGATGCAGGTTTTGGATACTACAATATATATGTAGATGTCCTATGTTGTATAACCACAGAATTATTAGATTCTCAGCCTTTGACTTTTCCATCCGGCGAGGGAATGTTTTGTTTTTGTATGAAGCTAAATAGTTTCTCCCGTTATCAGTTATGTTCATCTGCAGCTTTTACCCCTCGAGACTAGCAGACTCGTGATCAGATCGTTTGATGTTCTGC | |||||||||
gi|82482086|gb|DV702258.1|DV702258 CGN-48599 Seed of Late Development Stage Coffea canephora cDNA clone cccs46w26f18 5', mRNA se TTCCACAGCTTTCTTGAACT EST sequence (targeted fragment marked with yellow): CGGAATTCATTAGCTACCCAATTTATCTCTTGGTTGAGAAGACAACTGAGAAAGAGATCAGTGATGATGAAGATGAGGAAACCAAGAAGGACGAGGAAGGAGAAGTTGAAGAAGTAGATGAGGAGAAAGACAAGGATAAAAAGAAAAAGAAGAAGATAAAGGAGGTGACAAATGAATGGCAGCAAATTAACAAGCAGAAACCTCTCTGGCTTCGGAAGCCTGAAGAGGTTACCAAGGAGGAGTATGCAGCCTTCTACAAGAGCCTAACAAATGATTGGGAGGATCATCTTGCTGTGAAACACTTCTCTGTTGAAGGACAGCTGGAGTTCAAAGCTATTCTGTTTGTTCCAAAGAGGGCACCCTTTGATCTCTTTGATACACGGAAGAAGTTGAACAACATCAAGCTCTATGTCAGGAGGGTGTTCATCATGGATAATTGTGAGGAGCTCATTCCTGAATACCTTGGATTCGTTAAAGGCGTGGTGGATTCGGATGATCTCCCACTAAATATATCTCGTGAGACGCTCCAACAGAACAAAATCCTGAAGGTCATCAGGAAGAATATTGTCAAGAAGTGCATTGAGATGTTCTTTGAAATTGCAGAGAACAAAGAGGATTATGCTAAGTTCTATGACGCCTTCTCCAAAAATATCAAATTGGGTATTCATGAAGACAGCCAAAACAGGGCAAAGCTTGCTGATCTTCTCAGGTATTACTCCACAAAGAGTGGGGATGAGTTGACCAGCTTGAAGGACTATGTCACAAGGATGAAGGAAGGGCAGCAGGACATTTATTATATAACCGGCGAGAGCAAGAAAGCTGTTGAGAATTCTCCATTCTTGGAAA | |||||||||
gi|82464445|gb|DV691046.1|DV691046 CGN-34624 Leaf Coffea canephora cDNA clone cccl25i9 5', mRNA sequence TTCCACAGCTTTCTTGAACT EST sequence (targeted fragment marked with yellow): CCCGGGCTGCAGGTGGAATTTCCCCATTCCTGGCCCCCTTAAGTGACGTCCTGCACCACATAAAGGAGGGAAAACCATGTCTGCCGAAAAACATTTTGATAGTTTGGGCTGTGAAAAAATCAGATGAACTTCCACTTTTGCAGACAGTTGACATGGAGTCCATTTGTCCATTCTTTTCTGAAGCACTTAATCTTGAGGTTCAGACCTATGTTACTCGAGAATCAGAACCTCCATTGGAAGAGGGCCAAATTTACGAGCCTCCCAATTTTTGTACCTTCCGCCATTCAAACAAAAGTGGAATGTCTGTTTTGGTAGGCACTGGCAACATCATATGGCCTGGGATGTACATCATCGTCTCTGCAATTGGCTTAGCTGTTCTTGTTGGCTTGCTAAATGTGTTTTACATAAATCCCTTTCATATAACTTGCTGGTGGTACAAGGGGCTTCTACTCGTAGCTTGCATGATTGCAAGCGTCCTCCTATTTGGTGGTCTTGTGATTGTCTTATGGCATCTCTGGGATAGACAAACTTCAGTAGAGGAGCAAACCAAGGATGCTGGGAAGATTGGCAGTGTTCAGCAGAATGGTCATGCAACGCATAAAAATGTTGGCCAGGAAAAATATGTTAGTTCCATTCTCTACGGTCAAAGACCAGATTTTGGAGAAATTTTTGGATCAATTTCAGAAAGCTGGGGAAGTGTGGATATTGGTGTGATTGTTTGTGGACCTTCAACTCTTCAGACAAGTGTTGCTAGGGAATGTAGAACTAAGAATTTGAAGAGAAGAAAGAATGAG | |||||||||
gi|119326560|gb|EE196063.1|EE196063 CC-F01_003_C22 Cherry of different development stage Coffea canephora cDNA clone CC-F01_003_ TTCCACAGCTTTCTTGAACT EST sequence (targeted fragment marked with yellow): GGCCCTCCGCCACAGAAAAGAAATCCCAGAACATGACGACTCTTTCGTTGCTTCTCTTGTTTTCTTTGCTTTCTTTCTCATCAGCTGAGGACATGTCCATCCTGAGCTACGGTAACGCAAACCTAAAGGCGAGTGGCAGTGGGAGGACGGATGAAGAAGTGATGGCCTTGTACGAGGAATGGCTAGTGAAACATGGCAAGTCGTACAACGGCCTAGGAGAGAGAGATAAAAGGTTTGAAATTTTTAAGGATAATCTTAGGTACATCGACGAACAAAACAGCTTGCCCAACAGGACGTACCAGCTCGGGCTGAACCGATTTGCTGATCTGAGCAACGAGGAGTACCGTTCCACTTACTTGGGAACCCGCCCTGATCCCAAAAGGAGGTTGGCCAAGACTTCCAGCGATCGCTACCGTCCAAAAGTAGGTGATAGCGTGCCGAACTCCATTGACTGGAGAGAAAAAGGTGCTGTTCTTCCGGTCAAAGATNAGGGAAGCTGTGGGAGTTGCTGGGCCTTCTCAGCAGTTGCTGCCGTGGAAGGGATCAANNNNNTTGTGACTNGNGNNNTGATCTCCCTGTCTGNNNNNGNA | |||||||||
gi|82483844|gb|DV704016.1|DV704016 CGN-50703 Seed of Late Development Stage Coffea canephora cDNA clone cccs46w29g20 5', mRNA se TTCCACAGCTTTCTTGAACT EST sequence (targeted fragment marked with yellow): CCTATGAGCGTCGGAAACCTAGAGGAGCTTATTGACGAGAATCATGCTATTGTTTCGTCATCGGTTGGACCGGAGTATTATGTCGGGATTTTGTCGTTTGTGGATAAGGATCAGCTCGAGCCTGGATGCGCTATTCTGATGCACAACAAGGTTCTTTCTGTAGTTGGCCTTCTTCAAGATGAAGTCGACCCAATGGTGTCTGTCATGAAGGTTGAGAAGGCTCCGTTGGAATCTTATGCCGATATTGGTGGATTGGATGCTCAGATACAGGAAATCAAGGAAGCTGTTGAACTTCCCCTGACACACCCCGAGTTATATGAAGACATTGGTATTAAACCGCCTAAAGGTGTCATCCTCTATGGAGAGCCTGGCACCGGCAAAACCTTGCTTGCAAAGGCAGTAGCAAACTCCACTTCAGCAACTTTTCTGCGTGTTGTAGGAAGTGAACTGATTCAAAAGTACCTGGGTGATGGCCCTAAATTGGTGAGGGAACTCTTCAGAGTTGCTGATGAGCTCTCGCCATCTATCGTCTTTATTGATGAAATTGATGCAGTTGGTACAAAAAGGTATGATGCGCACTCTGGTGGTGAACGTGAGATTCAGAGGACCATGTTGGAATTGCTGAACCAGTTAGATGGTTTTGATTCACGAGGAGATGTCAAAGTGATTCTTGCAACAAACAAAATTGAGAGTCTTGATCCTGCACTCCTTCGCCCTGGTAGAATAGACCGAAAAATTGAATTCCCTCTTCCAGATATCAAGACAAGGAGGCGGATTTTCCAGATACACACGTCCAGGATGACATTGGCTGATGACGTCAATTTAGAAGAATTTGTTATGACTAAAGATGAGTTTTCTGGGGCTGATATT | |||||||||
gi|82481252|gb|DV701424.1|DV701424 CGN-47609 Seed of Late Development Stage Coffea canephora cDNA clone cccs46w19g14 5', mRNA se TTCCACAGCTTTCTTGAACT EST sequence (targeted fragment marked with yellow): CAGAAAAGAATCCCAGAACATGGCGACTCTTTCGTTGCTTCTCTTGTTTTCTTTGCTTTCTTTCTCATCAGCTGAGGACATGTCCATCCTGAGCTACGGTAACGCAAACCTAAAGACGAGTGGCAGTGGGAGGACGGATGAAGAAGTGATGGCCTTGTACGAGGAATGGCTAGTGAAACATGGCAAGTCGTACAACGGCCTAGGAGAGAAAGATAAAAGGTTTGAAATTTTTAAGGATAATCTTAGGTACATCGACGAACAAAACAGCTTGCCCAACAGGACGTACCAGCTCGGGCTGAACCGATTTGCTGATCTGAGCAACGAGGAGTACCGTTCCACTTACTTGGGAACCCGCCCTGATCCCAAAAGGAGGTTGGCCAAGACTTCCAGCGATCGCTACCGTCCAAAAGTAGGTGATAGCCTGCCGAACTCCATTGACTGGAGAGAAAAAGGTGCTGTTCTTCCGGTCAAAGATCAGGGAAGCTGTGGGAGCTGCTGGGCCTTCTCAGCAGTTGCTGCCGTGGAAGGGATCAACCAGATTGTGACTGGTGATTTGATCTCCCTGTCTGAGCAAGAACTAGTGGATTGTGATACTTCTTATGATGAAGGCTGNCACGGTGGCCTCATGGACTATGCGTTTGAGTTCATAATNNCACATGGTGGCATTGATACTGAGGAAGACTATCCGTACAGAG | |||||||||
gi|82473315|gb|DV693487.1|DV693487 CGN-37643 Leaf Coffea canephora cDNA clone cccl2l18 5', mRNA sequence TTCCACAGCTTTCTTGAACT EST sequence (targeted fragment marked with yellow): CTCGTGTGATATACTGGTACTACTAGTGTCTTTACAGTAAAACACTCGTCTCTTTTGTCATACAAAAAAAACCCTTTTAGGGTTAGATCCGATATTGCGTGCTTAGAGCCAGTTAGATATGGTCCTCTTCGTCTTATTCCACATCTTTCTTGAACTGCATCTGGCTTTATCACTCCATGAATATGATTCTTGCGAGACTTCGGAGGAGGTGACGCGATGATGGCGGTTCAATAAAGCTGTGGGATGATACTAATAGGATCAACAAACTTCTCGCTCCGATTTTTTGGCTTTAGTTTTTAACTGCATGATATCTCAGGTTTTGTTTCTTTTTTCTCTTTTTTTTTTTCGGGCTTTCCCCTTTTTGTGCACAACAATATTCACCGGCGTCTATAGTCTGGCCCGGAACCTGTAAATGCAGGTTTTGGATACTACAATATATATGTAGATGTCCTATGTTGAATAACCACAAAATTATTAAATTCTCGCCCTTTGACTTTTCCCTCCCGCGAGGGAATGTTTTGTTTTTGTATGAAGCTAAATGTTTTCCCCCGTTATCAGTTATGTTCATCTGCAGCTTTTCCCCCTCAAAACTACCAAACTCGTGATCAAATCTTTTGATGTTCTGCAAATAAGATGAGGTAGCTTGTATTTTATGTTTAATTCAAAAGCTGCTGCTCTTTATTTTATTTTTTCTT | |||||||||
gi|81294074|gb|DV668188.1|DV668188 CGN-6737 Pericarp Coffea canephora cDNA clone cccp13h1 5', mRNA sequence TTCCACAGCTTTCTTGAACT EST sequence (targeted fragment marked with yellow): CTCTGACTAAGTGCAAGCTCCGATTGCTCAAGCTCGAGCGGATCAAAGACTATCTTTTGATGGAAGAAGAGTTTGTCAGTAATCAGGAACGCTTGAAGCCTCGAGAGGAGAAGACTGAAGAGGATAGATCCAAGGTCGATGATCTCCTCGGCTCTCCTATGAGCGTCGGAAACCTAGAGGAGCTTATTGACGAGAATCATGCTATTGTTTCGTCATCGGCTGGACCGGAGTATTATGTCGGGATTTTGTCGGTTGTGGATAAGGATCAGCTCGAGCCTGGATGCGCTATTCTGATGCACGACAAGGTTCTTTCTGTAGTTGGCCTTCTTCAAGATGAAGTCGACCCAATGGTGTCTGTCATGAAGGTTGAGAAGGCTCCGTTGGAATCTTATGCCGATATTGGCGGATTGGATGCTCAGATACCGGAAATCAAGGAAGCTGTTGAACTTCCCCTG | |||||||||