| mature miRNA: TTCCACAGCTTTCTTGAACTG species: Coffea canephora database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|82462035|gb|DV688636.1|DV688636 CGN-31386 Leaf Coffea canephora cDNA clone cccl11m20 5', mRNA sequence TTCCACAGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): CTCTCTCTCTCTCTCTCTCTCGTGTGATATACTGGTACTACTAGTGTCTTTACAGTAAAACACTCGTCTCTTTTGTCATACAGAAAAAACCCTTTTAGGGTTAGATCCGATATTGCGTGCTTAGAGCCAGTTAGATATGGTCCTCTTCGTCTTATTCCACAGCTTTCTTGAACTGCATCTGGCTTTATCACTCCATGAATATGATTCTTGCAAGACTTCGGTGGAGGTGACGCGATGATGGCGGTTCAATAAAGCTGTGGGATGATACTAATAGGATCAACAAACTTCTCGCTCCGATTTTTTGGCTTTAGTTTTTAACTGCATGATATCTCAGGTTTTGTTTCTTTTTTCTCTTTTTTTTTTTCGGGCTTTCCCCTTCGTGTTCACAACAATAGTCACCGGCTTCTATAGTCTGGCCCGGAACCTGTAGATGCAGGTTTTGGATACTACAATATATATGTAGATGTCCTATGTTGTATAACCACAGAATTATTAGATTCTCAGCCTTTGACTTTTCCATCCGGCGAGGGAATGTTTTGTTTTTGTATGAAGCTAAATAGTTTCTCCCGTTATCAGTTATGTTCATCTGCAGCTTTTACCCCTCGAGACTAGCAGACTCGTGATCAGATCGTTTGATGTTCTGC | |||||||||
gi|82473315|gb|DV693487.1|DV693487 CGN-37643 Leaf Coffea canephora cDNA clone cccl2l18 5', mRNA sequence TTCCACAGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): CTCGTGTGATATACTGGTACTACTAGTGTCTTTACAGTAAAACACTCGTCTCTTTTGTCATACAAAAAAAACCCTTTTAGGGTTAGATCCGATATTGCGTGCTTAGAGCCAGTTAGATATGGTCCTCTTCGTCTTATTCCACATCTTTCTTGAACTGCATCTGGCTTTATCACTCCATGAATATGATTCTTGCGAGACTTCGGAGGAGGTGACGCGATGATGGCGGTTCAATAAAGCTGTGGGATGATACTAATAGGATCAACAAACTTCTCGCTCCGATTTTTTGGCTTTAGTTTTTAACTGCATGATATCTCAGGTTTTGTTTCTTTTTTCTCTTTTTTTTTTTCGGGCTTTCCCCTTTTTGTGCACAACAATATTCACCGGCGTCTATAGTCTGGCCCGGAACCTGTAAATGCAGGTTTTGGATACTACAATATATATGTAGATGTCCTATGTTGAATAACCACAAAATTATTAAATTCTCGCCCTTTGACTTTTCCCTCCCGCGAGGGAATGTTTTGTTTTTGTATGAAGCTAAATGTTTTCCCCCGTTATCAGTTATGTTCATCTGCAGCTTTTCCCCCTCAAAACTACCAAACTCGTGATCAAATCTTTTGATGTTCTGCAAATAAGATGAGGTAGCTTGTATTTTATGTTTAATTCAAAAGCTGCTGCTCTTTATTTTATTTTTTCTT | |||||||||
gi|82479299|gb|DV699471.1|DV699471 CGN-45301 Seed of Late Development Stage Coffea canephora cDNA clone cccs46w21e10 5', mRNA se TTCCACAGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): GGAGAGAAAAAGGTGCTGTTCTTCCGGTCAAAGATCAGGGAAGCTGTGGGAGTTGCTGGGCCTTCTCAGCAGTTGCTGCCGTGGAAGGGATCAACCAGATTGTGACTGGTGATTTGATCTCCCTGTCTGAGCAAGAACTAGTGGATTGTGATACTTCTTATGATGAAGGCTGCAACGGTGGCCTCATGGACTATGCGTTTGAGTTCATCATCAACAATGGTGGCATTGATACTGAGGAAGACTATCCGTACAGAGGCAGGGACATGACGTGTGACACATACAGGAAAAATGCCAGGGTGGTCACAATTGACGGCTATGAAGATGTAATTCCCTATGATGAGAGGGCACTGCAGAAGGCCGTGGCCAATCAACCCGTCAGTGTTGCCATTGAAGGTTCTAGCAGAGATTTCCAACTCTATTTGAAGGGTTTATTCACCGGCAACTGTGGGACTGCATTAGATCACGGTGTGAATGTGGTTGGATATGGTACAGCAAACGGTAAGGATTATTGGATCGTCAGGAACTCATGGGGTGCAGAGTGGGGGGAGGATGGCTACATCAGGATGGAGCGTAATGTCAAAGCAACCTCAGGCTTATGTGGCATCACCAGTGAGCCCTCTTACCCTGTCAAGAAAGGCCCAAATCCTCCCAATCCTGGTCCTTCCCCTCCATCTCCAATCAAGCCTCCAGCAGCCTGTGATAATTACTATGAATGCCCACAGGACAACACCTGCTGCTGTGTCTTCGAGTTCTATGGCTCGTGCTTCGAATGGGGATGCTGCCCTCTAAAAGGTGCCGTATGCTGCGAAAAACACTACAGCTGCTGCCCC | |||||||||
gi|82472925|gb|DV693097.1|DV693097 CGN-37175 Leaf Coffea canephora cDNA clone cccl20o13 5', mRNA sequence TTCCACAGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): CAAGGGCCCTTTACTCGTAGCTTGCATGATTGCAAGCGTCCTCCTATTCGGTGGTCTTGTGATTGTCTTATGGCATCTCTGGGATAGACAAACTTCAGTAGAGGAGCAAACCAAGGATGCTGGGAAGATTGGCAGTGTTCAGCAGAATGGTCATGCAACGCATAAAAATGTTGGCCAGGAAAAATATGTTAGTTCCATTCTCTACGGTCAAAGACCAGATTTTTGAGAAATTTTTGGATCAATTTCAGAAAGCTGGGGAAGTGTGGATATTGGTGTGATTGTTTGTGGACCTTCAACTCTTCAGACAAGTGTTGCTAGGGAATGTAGAACTAAGAATTTGAAGAGAAGAAAGAATGAGCCAATATTCCATTTCAACAGCCACAGCTTCGACCTCTAGTCACCATCCCGTGCATACTGTATAAATTTTCTGTAGCTGTATGATGTATAGGAAGAATAAGTCCTTCCGTACGGACTTAATTATTAGCTTCTTGATTGCACATTACGGATATATAAATAGATGCATGTATATCTGAGTATGAAGATTATGTAGCTAAACTATTACCCCTACAGGGATTATAAATAGATGCATGTATGCTTGAGTATGAAGATTATGTAGCTAAACTATTACCCCTACAGGGATTATTTTGTTGTTCTAAATTAGTTCGTTTAACCAAGTTAGCACTCAAAAAAAAAAAAAAAAAA | |||||||||
gi|82481252|gb|DV701424.1|DV701424 CGN-47609 Seed of Late Development Stage Coffea canephora cDNA clone cccs46w19g14 5', mRNA se TTCCACAGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): CAGAAAAGAATCCCAGAACATGGCGACTCTTTCGTTGCTTCTCTTGTTTTCTTTGCTTTCTTTCTCATCAGCTGAGGACATGTCCATCCTGAGCTACGGTAACGCAAACCTAAAGACGAGTGGCAGTGGGAGGACGGATGAAGAAGTGATGGCCTTGTACGAGGAATGGCTAGTGAAACATGGCAAGTCGTACAACGGCCTAGGAGAGAAAGATAAAAGGTTTGAAATTTTTAAGGATAATCTTAGGTACATCGACGAACAAAACAGCTTGCCCAACAGGACGTACCAGCTCGGGCTGAACCGATTTGCTGATCTGAGCAACGAGGAGTACCGTTCCACTTACTTGGGAACCCGCCCTGATCCCAAAAGGAGGTTGGCCAAGACTTCCAGCGATCGCTACCGTCCAAAAGTAGGTGATAGCCTGCCGAACTCCATTGACTGGAGAGAAAAAGGTGCTGTTCTTCCGGTCAAAGATCAGGGAAGCTGTGGGAGCTGCTGGGCCTTCTCAGCAGTTGCTGCCGTGGAAGGGATCAACCAGATTGTGACTGGTGATTTGATCTCCCTGTCTGAGCAAGAACTAGTGGATTGTGATACTTCTTATGATGAAGGCTGNCACGGTGGCCTCATGGACTATGCGTTTGAGTTCATAATNNCACATGGTGGCATTGATACTGAGGAAGACTATCCGTACAGAG | |||||||||
gi|119330967|gb|EE200470.1|EE200470 CC-F01_019_L16 Cherry of different development stage Coffea canephora cDNA clone CC-F01_019_ TTCCACAGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): GCCACAGAAAAGAAATCCCAGAACATGACGACTCTTTCGTTGCTTCTCTTGTTTTCTTTGCTTTCTTTCTCATCAGCTGAGGACATGTCCATCCTGAGCTACGGTAACGCAAACCTAAAGGCGAGTGGCAGTGGGAGGACGGATGAAGAAGTGATGGCCTTGTACGAGGAATGGCTAGTGAAACATGGCAAGTCGTACAACGGCCTAGGAGAGAGAGATAAAAGGTTTGAAATTTTTAAGGATAATCTTAGGTACATCGACGAACAAAACAGCTTGCCCAACAGGACGTACCAGCTCGGGCTGAACCGATTTGCTGATCTGAGCAACGAGGAGTACCGTTCCACTTACTTGGGAACCCGCCCTGATCCCAAAAGGAGGTTGGCCAAGACTTCCAGCGATCGCTACCGTCCAAAAGTAGGTGATAGCGTGCTGAACTCCATTGACTGGAGAGAAAAAGGTGCTGTTCTTCCGGTCAAAGATCAGGGAAGCTGTGGGAGTTGCTGGGCCTTCTCAGCAGTTGCTGCCGTGGAAGGGATCAACCAGATTGTGACTGGTGANNTGATCTCCCTGTCTGAGCAAGAACTAGTGGATTGTGATACTTCTTATGAT | |||||||||
gi|82464445|gb|DV691046.1|DV691046 CGN-34624 Leaf Coffea canephora cDNA clone cccl25i9 5', mRNA sequence TTCCACAGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): CCCGGGCTGCAGGTGGAATTTCCCCATTCCTGGCCCCCTTAAGTGACGTCCTGCACCACATAAAGGAGGGAAAACCATGTCTGCCGAAAAACATTTTGATAGTTTGGGCTGTGAAAAAATCAGATGAACTTCCACTTTTGCAGACAGTTGACATGGAGTCCATTTGTCCATTCTTTTCTGAAGCACTTAATCTTGAGGTTCAGACCTATGTTACTCGAGAATCAGAACCTCCATTGGAAGAGGGCCAAATTTACGAGCCTCCCAATTTTTGTACCTTCCGCCATTCAAACAAAAGTGGAATGTCTGTTTTGGTAGGCACTGGCAACATCATATGGCCTGGGATGTACATCATCGTCTCTGCAATTGGCTTAGCTGTTCTTGTTGGCTTGCTAAATGTGTTTTACATAAATCCCTTTCATATAACTTGCTGGTGGTACAAGGGGCTTCTACTCGTAGCTTGCATGATTGCAAGCGTCCTCCTATTTGGTGGTCTTGTGATTGTCTTATGGCATCTCTGGGATAGACAAACTTCAGTAGAGGAGCAAACCAAGGATGCTGGGAAGATTGGCAGTGTTCAGCAGAATGGTCATGCAACGCATAAAAATGTTGGCCAGGAAAAATATGTTAGTTCCATTCTCTACGGTCAAAGACCAGATTTTGGAGAAATTTTTGGATCAATTTCAGAAAGCTGGGGAAGTGTGGATATTGGTGTGATTGTTTGTGGACCTTCAACTCTTCAGACAAGTGTTGCTAGGGAATGTAGAACTAAGAATTTGAAGAGAAGAAAGAATGAG | |||||||||