| mature miRNA: TTGCTGCCTCAATCTTCCTCC species: Coffea canephora database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|119329768|gb|EE199271.1|EE199271 CC-F01_015_K07 Cherry of different development stage Coffea canephora cDNA clone CC-F01_015_ TTGCTGCCTCAATCTTCCTCC EST sequence (targeted fragment marked with yellow): TCCAAGGGGCACCCCACAAATTGAAGTCACTTTTGAAGTTGATGCCAATGGTATCTTGAATGTCAAGGCAGAAGACAAAGGTACTGGTAAATCAGAGAAGATCACAATCACTAATGACAAAGGTCGCCTGAGTCAAGAGGAGATTGAACGAATGGTTCGTGAGGCAGAAGAGTTTGCCGAGGAAGACAAGAAGATGAAAGAGAGGATTGATGCTCGGAATGGTCTCGAGACATACGTGTACAACATGAAGAACCAGATTAATGACAAGGACAAGCTTGCTGACAAGCTTGAGTCTGATGAGAAGGAGAAGATTGAGGCAGCTGTGAAGGANNCTCTTGAGTGGTTAGACGATAACCAGTCTGCTGAGAAAGAGGACTATGAAGAGAAGTTGAAAGAAGTAGAAGCTGTTTGTAACCCAATCATTACAGCTGTCTACCAAAGATCAGGTGGCGCTCCCGGTGGCGCATCAGNNNATGATGATTCTCATGATGAACTGTAGGCGACTCTTAGCATCCAAGTTCACCACTGATGAAAAAGACGTGGCAGCAAGANNNGTCGGGATGTNNNCT | |||||||||
gi|81292318|gb|DV666432.1|DV666432 CGN-4302 Cherry of Early Development Stage Coffea canephora cDNA clone cccs18w6n8 5', mRNA se TTGCTGCCTCAATCTTCCTCC EST sequence (targeted fragment marked with yellow): CACCCCACAAATTGAAGTCACTTTTGAAGTTGATGCCAATGGTATCTTGAATGTCAAGGCAGAAGACAAAGGTACTGGTAAATCAGAGAAGATCACAATCACTAATGACAAAGGTCGCCTGAGTCAAGAGGAGATTGAACGAATGGTTCGTGAGGCAGAAGAGTTTGCCGAGGAAGACAAGAAGATGAAAGAGAGGATTGATGCTCGGAATGGTCTCGAGACATACGTGTACAACATGAAGAACCAGATTAATGACAAGGACAAGCTTGCTGACAAGCTTGAGTCTGATGAGAAGGAGAAGATTGAGGCAGCTGTGAAGGAGGCTCTTGAGTGGTTAGACGATAACCAGTCTGCTGAGAAAGAGGACTATGAAGAGAAGTTGAAAGAAGTAGAAGCTGTTTGTAACCCAATCATTACAGCTGTCTACCAAAGATCAGGTGGCGCTCCCGGTGGCGCATCAGAGGATGATG | |||||||||
gi|82461672|gb|DV688273.1|DV688273 CGN-30881 Leaf Coffea canephora cDNA clone cccl24f19 5', mRNA sequence TTGCTGCCTCAATCTTCCTCC EST sequence (targeted fragment marked with yellow): CGTGGTAGGAAGCTTGAGGCGGCAGCTGGCCCCCTTTCTGCTATTCAAGTAACTTTGGACTTGGAAGTCTTCTTGATTGTGTTTTAANCGCAATGAGGTCAATTTCCTGTGGGAACTTTGACTATGATGTTCGCCCATCTGACCTGGAGAGGCTGTTTCAAACATATGGGATGGTTGATCCGGGCGGACAAGAAGTCTGGATT | |||||||||