| mature miRNA: TTGGACTGAAGGGAGCTCC species: Cucumis melo subsp. melo database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|157706214|gb|AM723685.2|AM723685 AM723685 Cucumis melo subsp. melo Cantaloupe C-35 leaf 15 days after pollination healthy Cuc TTGGACTGAAGGGAGCTCC EST sequence (targeted fragment marked with yellow): TGTGTGTGAGAGAGAGAGTGTGTGTGTTGGAGATGACGTCGGGGACTCGGCTAACGACGTGGAGGGAGCGGGAGAACAACAAAAGAAGGGAGAGAAGGAGAAGAGCTATTGCGGCAAAGATCTTTGCTGGACTCAGGATGTACGGGAACTACAAGCTTCCCAAACATTGCGACAACAACGAGGTCCTTAAAGCTCTCTGCAATGAGGCGGGATGGACCGTTGAACCCTGGCACCACTTACCGTAAGGGATGCAAGCCAATTGAACGTATGGATGTGGTTGGTGGATCGGCAGCTGCAAGCCCGTACACATCTCACCAACCAAGTCCTTGTGCTTCCTTCAATCCAAGCCCCGGTTCGTCTTCTTTTCCTAGTCCAGCATCATCCTCATATGTCGGTAATCCAAATACCGATGGAAGTTCACTTATCCCCTGGCTGAAAAACCTTTCAACGTCATCATCTTCGGCATCCTCGTCTAAACTCCCAAATCATTATATTCATGGAGGTTCCATCAGTGCTCCTGTTACTCCTCCTCTAAGTTCCCCAACTGCTAGAACACCCCGACTCAAAGCTGACTGGGAAGACCAATCTGTCTTACCAGGATGGAGTGCACAATACTATTCCTCCCAGCCATCTTCCACTCCACCAAGTCCTGGGCGTCAGATTGTTCCCACTCCAGAATGGTTTGCTGGCCTTAGAATTCCTCAGGGTGGACCCAATTCTCCAACATTTAGTCTTGTCTCCACAAACCCATTTGGTTTCAAAGAAGCAGCAATCACTGGTGGAGGATCTCGCATGTGGACCCCTGGTCAAAGTGGGACCTGCTCTCCTGCCATTGCAGCGGGCTCTGATCACACTGCAGATATTCCATGTCAGAAGTGATCTCTGA | |||||||||
gi|157712539|gb|AM720369.2|AM720369 AM720369 Cucumis melo subsp. melo Piel de Sapo Pinyonet torpedo root 15 days after pollinati TTGGACTGAAGGGAGCTCC EST sequence (targeted fragment marked with yellow): TTTGTGATTGTAGTTGAATCGTATTCGTCCTGAGATAGACGGAGGCAATTCGAAAGAATTGCTTTCTGATCTATCGGTTGAAGCTGTTTGAACTTTGATTTGTTGGTTCTGAGTGTGTGTGTGTGTGAGAGAGAGAGAGTGTGTGTTGGAGATGACGTCGGGGACTCGGCTACCGACGTGGAGGGAGCGGGAGAACAACAAAAGAAGGGAGAGAAGGAGAAGAGCTATTGCGGCAAAGATCTTTGCTGGACTCAGGATGTACGGGAACTACAAGCTTCCCAAACATTGCGACAACAACGAGGTCCTTAAAGCTCTCTGCAATGAGGCGGGATGGACCGTTGAACCTGATGGCACCACTTACCGTAAGGGATGCAAGCCAATTGAACGTATGGATGTGGTTGGTGGATCGGCAGCTGCAAGCCCGTACACATCTCACCAACCAAGTCCTTGTGCTTCCTTCAATCCAAGCCCCGGTTCATCTTCTTTTCCTAGTCCAGCATCATCCTCATATGTCGGTAATCCAAATACCGATGGAAGTTCACTTATCCCCTGGCTGAAAAACCTTTCAACGTCATCATCTTCGGCATCCTCGTCTAAACTCCCAAATCATTATATTCATGGAGGTTCCATCAGTGCTCCTGTTACTCCTCCTCTAAGTTCCCCAACTGCTAGAACACCCCGACTCAAAGCTGACTGGGAAGACCAATCTGTCTTACCAGGATGGAGTGCACAATACTATTCCTCCCAGCCATCTTCCACTCCACCAAGTCCTGGGCGTCAGATTGTTCCCACTCCAGAATGGTTTGCTGGCCT | |||||||||
gi|157731333|gb|AM738340.2|AM738340 AM738340 Cucumis melo subsp. melo Piel de Sapo T-111 fruit 15 days after pollination Cucumis TTGGACTGAAGGGAGCTCC EST sequence (targeted fragment marked with yellow): ATCCATAACCCAAACACAACACTTCAAAATTCTTCCTCTCTTTCTCTTTTCTTCCGAATTTTCTCCCCAATTCCTTGTTTCGGTGGACAGGAATTTGTTTATCATATCTGATCCATCTTCAGATGGAAAAATTGCCCACCGAAATCTGCTTGAAGATTTTCTGCTTCTTGGATTCCCAGAACCTTGCAACCGCACTTCAAGGAAGTGGAACTCCTTAGCTTCAGACAATATCTTGTGGTCAAATTTATTCAAGGAGAGGTGGGGAGAAGACCAAGCTGCATTTTATCATCCAAGTGGTTCAAAGTCATGGAAGGATTCATATGAGGTGCAAGATCGATGTGATCGATTTGGACTCGGCCTAAGAATTATCCGAGAAGGGAATGACTACTATCTCATTCACCAAGGTGAAATCCAGAGGCACCTAGGTTCAAGAAGACAAAAGAATGGACAGACCAGTTTTCTTCCTTTGAGTTCGAAAAGAGAGTTCCTATCAGAAGGACTTCTCGAAGAAGACAAATCCTGTCGAGGAATTCTGGACAGGATCCTTTTCTTCATTGGAGACTTGGAAGTTGCTTCCACAGATGCAAAGCGTAGCAGGTCTCTGTGAAGCTTCCTTCAGTCAACAAAAATTATGTGAATTTTATGTATAATATTTTATATTTGTTTATGTTGACATTGAATACTGGCAAATGTAAAATATACATCTCAAGTTCTTTTGAAAATGCCTAATAA | |||||||||
gi|157727576|gb|AM730856.2|AM730856 AM730856 Cucumis melo subsp. melo Cantaloupe C-35 cotyledon 15 days after pollination infect TTGGACTGAAGGGAGCTCC EST sequence (targeted fragment marked with yellow): AAAAGAGACACAAAAACGGTTGCCAAGAAGGTGGCGTTGGAACAATTGACAGCCTCTCCTTGGAACCACTTTGTCTTCTTGGTTTATTACGGACTGATTATTGAAGGAAGGACTTGGGTCCAGGTAAAGGCTAAGGTGAAAAAGGAATTTCCTTCACTCCAGCTAACTGCTTGGATGTTCTGGCCATTTGTTGGTTGGATAAATCACCAGTTTATGCCTCTTCAGTTGCGCGTCATCTTCCATAGCCTGGTCGCATTCTGTTGGGGATTATTTTTGAACGTTCGAGCAAAATCCGTGACGTTGAAGAAATCTTAGTGGAAAACTAGAATACTGCAAAATGTCCTGTGACTGATGAAATATTATCCTCATTAGTACTTATTACAAACTTTTCTTTAGCTTTCGTGAAAGTAATTGTCCCCAATGCAACTTGATTATTGAACTATATGCTTCTAGCAATGGTGCTTGAAATGAAATTTTTAAGAACATTGTGATCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|157722583|gb|AM734187.2|AM734187 AM734187 Cucumis melo subsp. melo Cantaloupe C-35 cotyledon 15 days after pollination infect TTGGACTGAAGGGAGCTCC EST sequence (targeted fragment marked with yellow): TCTTCTGGGATTATAGCCCAACAACCGTCGTCGTCTTCATCTTCACGGCCTGGCCATAATCAATCTGCGGGATTTTCAGGGCAAATCTTTTTGGGGAATCCACACCAATTGCCGGTGTCGATTCCACAATTTAACATCTCAGCCGCTGAAAATACTCAACAGGATCGGCTTCAACATTTCTCGTTCGTCCCAGATAATTTGAACGACTATAATCTTAACTTCACCATCTCTGCCGGCCTTGCTGGTTGCAATAGGGGGACCCTTCAGTCCAATATTTCACCGTCTCTTTTGCCTTACCTTCAGAGGTTTCCTCACTTAGAGGGATCAAACGTACCCTTTTTCATCGGAGCTGCATCGCCAACGACGGCGACGACTCCCGTACAGTTGGAAAATCACCATCAGTTGACACCAGCATTATTTGATGGTAGCTGGCAACTCTGTTATGCTGATGGAAGCCATCACTCAGATCAAAAGGGTAAAGGAAAGAACTGATGAGTTCTCAGAAAGCACATTTCTTCCACCCCATTTCCAGGTTGTGATGGTGGAAATATGAAGATGGAGCACCAGAGAGTGGCCCTGCTCATCGTGAGTCCTCCATGTTCAGATCTCCACATTTTTATGCTTCTGAAACACTTGATTTTTCTTTGCTTTATCCCATTTTGAGTTTCTAAATTCCTTCTTTACCTCTCGCATTGATTCTTATTATGTTTTCAAGTGTTTATGTGTAATCTTTCCACAAGCAAATGCATGTTTTGTTGGTATTGAAAGTAGAGACGTAGAACAAACACAAATTTATGTGGAAACTCTAGTACAGGGAGAAAACCACGATGCTGATATTTCTTGTTATTTTTTTACGATAAAAAAAAAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|157727557|gb|AM730917.2|AM730917 AM730917 Cucumis melo subsp. melo Cantaloupe C-35 cotyledon 15 days after pollination infect TTGGACTGAAGGGAGCTCC EST sequence (targeted fragment marked with yellow): AGTGCAGATCATAGTGGAGGCGGAGACGGCAAAGCTGGAGGTGTGGATGGAGAATTCTTATACAACTCGCAACCAACAAGCTCGAGTTTTCCTCCGCCATCGCCGCCGTTGCCAATTCTGCAACCGCTATTTGGAGAAAACCAGTTGGTTTCTCAGAGGGGACCCCTTCAGTCCAGTTACACGCCCTCGATTCGCGCTTGGACAGACCCGTCAATCGCCTTCATGGATAATCAGCAGCAGCTAATTCCACCGTCGATCCACCAATCTTCTTTTCCGGGTCTTGGATTCGCCACCGGCGGATTCTCCAGGTTTCTAATTCCGACGCGAATCCCGGGTGAAGAGGAACATGATGGTACTTCTGAAAAGCCATCCTCTGCTTCCTCCAACTCCCGCCATTGAATCTGCTTAAACAGCTGCTTAAATCTCTCCCTATTTTGTAAGTAACTACGTTATATTAAGTAGCCGGTTTATTCACTTCCAAGTTTAGTTCTAACACCATTTATTTAACTGTAAATTCTTTATTCGCAGGACTTGTTCATCGTTAACTAATAAAGTCAGTGAATAAGCTGCTTTCCCATTGATGGCTTGTTTGCAGGGAGCAGAATTTGTGTCACTTTCTCAATGGCTTTTACTGTGGGAAGAAGAATCCTAAAACTATATCATCAGGTTTCTTCATTCCCCAGTTATCTCCTCTTCTGTTTATGTTTTGGGTTTTCTTTTTCCTGTTTGAAAGCTTGCCTATATCTATCTCCATTTCAGAGCTTTCTATGCTATGGAGTAGTATCTGTTTTTGTTTCAGCGTGTATT | |||||||||
gi|157720066|gb|AM721419.2|AM721419 AM721419 Cucumis melo subsp. melo Piel de Sapo Pinyonet torpedo root 46 days after pollinati TTGGACTGAAGGGAGCTCC EST sequence (targeted fragment marked with yellow): ACCCTCCTAAAACCCTTTTCATATCTTTCACTCTCTCATGAAAATTCTTCTCTCCCAAACAGTTTCCCTAAGGTTTTGGACAAAATAGAGAAAAGGGTATTCGTCTATTTGTTCTAATTTTGTTGGGTTCTCTTCTTTTTCTTTTTCTTTTTCTTTTTCTTCTTCTTCTTCTTCCTCTTACTGTTTCAGTGGAATTATTAGTATAAACTTTGGGAAGTTTTGAAAGAAATCTGCTGTTTCTGCTTGGTTTTTAAGCCATCTGATCAATTTCCCATTTCCATATCTCTTGGAAGTTCGATTCCTCTTGGCGATTTTCGGCTATAAATGGCCAGGAAATGCTTCTGGTTCTGTTTTCAATCGATTCCCGGTTTCTGGGTCGTCTTCTCTGCCATTGATTGATGCTGCATACGCAGCATTGGCTGATGCTGGATATCAGAAAATGGAAGTCATAGTCACGGAAACTGGTTGGGCTTCCCGTGGAGACGAAAATGAAGCTGCGGCAACTGCAAGTAATGCAAGGATATTTAATTACAATCTTAGGAAGAGGCTTGCTAAGAAGAAGGGAACTCCCTTCAGGCCAAAGAATGCGTTGAGGGCTTATATTTTCGCAACGTTTAACGAAAATTTGAAGCCAGGGCCGACTTCTGAGAGAAACTTTGGACTTTTCAAAGCTGATGGAAGTATATCATATGACATTGGATTTCATGGACTTAAATCTTCTTCTTCAGATTCATCTTATTTATCTCTCAAGGATTTCCGAGCTCGAGGACTTTCGGGAAGCCACATGATCTCATTAACGATCTCGGCCGTGACGCTTCTATTATTGTTGAGATGAAAATGAAATTTAGAATGTCTGAGAACATTTAAGTAGAAAAGTAAGCTGCAGTACG | |||||||||
gi|157705143|gb|AM735383.2|AM735383 AM735383 Cucumis melo subsp. melo Cantaloupe C-35 cotyledon 15 days after pollination infect TTGGACTGAAGGGAGCTCC EST sequence (targeted fragment marked with yellow): ACCAAATACTGCAATATCCCTGTGAAGACAATTAAATTGAGTGACCAAGATTTTCTAGGAGAAGCTAGTTGTGTTCTTTCAGAGATAATAACCAAACAGAGTCGTAGTTTAACTCTATGTCTGAAAGATGGGCATGGAGGTTCAAGAAACTTGGGTGGGTCTCTCACTGTTCGAGCAGAGGAAACAATTGCTTCAAGAAGTGTCGTCGAAATAGTACTCCGTTGTTCTCATCTTGACAATAAAGATGTGTTTTCTAAAAGCGATCCTTTCTTGAGAATATCTAGAGTTGTTGAAACTGGAGGCTCAATTCCAATCTGTAAAACTGAAGTGGTTAAAGATAATCTTTATCCTGTTTGGAGACCTTTATTCTTGAGCATGCAGAAGTTTGGTGACAAGGATAACCCATTGGTCATTGAGTGCTTTAATTTCAATAGCAATGGCAATCATGAATTAATTGGTAAGCTCCAGAAATCGATGGGTGATCTTGAAAAGCTTTACCGAGAAAAAAGTGGTGCAAATTTTGTTATTCCATCTTCTCATGGTGGCTATGAGAAGGTTCTGAAAGGTCAGCTGTTTGTAGATCACTTCGTTGAGAAAACACAATTCAGCTTTATTGATTACATTTCCAGTGGATTTCAGCTTGATTTTATGGTCGCTGTTGATTTTACAGCTTCTAATGGAGATCCCTACAGTCCAGATTCGTTGCATTACATTGACCGTAGTGGACGTTTGAATAGTTACCAGCAGGCCATAAAGGAAGTAGGGGAGGTAATTCAATTTTACAACACTGATTGTCGGTTTCCAGCTTGGGGCTTTGGCGCAAGAACACGGGATGGCAACATTTCGCATTGTTTNCACTTGAGTACAGCTCCCAACT | |||||||||
gi|157706361|gb|AM738674.2|AM738674 AM738674 Cucumis melo subsp. melo Piel de Sapo T-111 fruit 15 days after pollination Cucumis TTGGACTGAAGGGAGCTCC EST sequence (targeted fragment marked with yellow): TAAGAGAGCTTTCTTCAGTCCACTCATGGGTGGCGGTAGGGTTTAATTAGCTGCCGACTCATTCATTCAAATATTGAGTCCAAAAATTTCAAATCTCAAATGGATTCACTAAACGATTGAATGATGCGGGAGACAAATTGAATCTTAAGCTTCCTGTACTTGGACTGAAGGGAGCTCCCTTTTCTTTCTATCTTTTCCTTTTCTTCATCCTCGAGATCGAGATCTCTATCGTATAGCTTAATTGATTAAACATATGTATTTGTTAAAAGCTTACAATACCCACTTTCTCGATTCTTCTTCTTAATCAGACGTTCAAAGACTTGCCGTCGACATAGCTCAGGTCAGAAGTGATGGAGAGCCTGGACTCAGATTTGTGCAGAGAGGACCCATTTGAAGTAAATTTCAGGTAAAAAAAGAAATGTCTTTTTTTTTTTTTAAATGTTATTAATGTTAGATGATATTAATGTGGGAAGGAAGAAGAATGTGGATTAGGGTTTTTTTTTCTTTTTTTTTTTTGGAAAAAGATGGAATATTTG | |||||||||
gi|157732817|gb|AM734973.2|AM734973 AM734973 Cucumis melo subsp. melo Cantaloupe C-35 cotyledon 15 days after pollination infect TTGGACTGAAGGGAGCTCC EST sequence (targeted fragment marked with yellow): ACGTTCCCTCCGGATTTACTTTCCAGAACAAGTAGCCGAACGCAGGATCTTCGGCTCTCCTTGCAGTCTCTTCACGGCCCAACATCGAAGCTTGAATCCGAACAAACACAGCAAAACGACAATCTCTATTTCTCTGGAACAACACCATTAGGTTGCTTCGACGGATGGTCGGAGCAGCAACCCTCACCGACCATGGAAATCAGTCGATTTCAGAGGATATTGAATTGGAGCACAGTGAGTGCAGATCATAGTGGAGGCGGAGACGGCAAAGCTGGAGGTGTGGATGGAGAATTCTTATACAACTCGCAACCAACAAGCTCGAGTTTTCCTCCGCCATCGCCGCCGTTGCCAATTCTGCAACCGCTATTTGGAGAAAACCAGTTGGTTTCTCAGAGGGGACCCCTTCAGTCCAGTCACACGCCCTCGATTCGCGCTTGGATAGACCCGTCAATCGCCTTCATGGATAATCAGCAGCAGCTAATTCCACCGTCGATCTACCAATCTTCTTTTCCGGGTCTTGGATTCGCCACCGGCGGATTCTCCAGGTTTCTAATTCCGACGCGAATCCCGGGTGAAGAGGAACATGATGGTATTTCTGAAAAGCCATCCTCTGCTTCCTCCAACTCCCGCCATTGAATCTGCTTAAACAGCTGCTTAAATCTCTCCCTATTTTGACTTGTTCATCGTTAACTAATAAAGTCAGTGAATAAGCTGCTTTCCCATTGATGGCTTGTTTGCAGGGAGCAGAATTTGTGTCACTTTCTCAATGGCTTTTACTGTGGGAAGAAGAATCCTAAAACTATATCATCAGGTTTCTTCATTCCCCAGTTATCTCCTTTTCTGTTTATGTTT | |||||||||
gi|157731744|gb|AM731302.2|AM731302 AM731302 Cucumis melo subsp. melo Cantaloupe C-35 cotyledon 15 days after pollination infect TTGGACTGAAGGGAGCTCC EST sequence (targeted fragment marked with yellow): GGAATTTCGGAATGTACTATGCAAAATTTGCAGAATATTTCGACAGAGGATAACCATAATAGCGACAACTCCAACTTTCTTCCACCATCTTTCGATTCGGATTCGATTGTCGATACCTTCAAATCGTTTTTACCGGTGACTCCGACGGCAGCGGCAGAGACACCGTCGTCTATTTTTGAGTTTGACACGTTCCCTCCGGATTTACTTTCCAGAACAAGTAGCCGAACGCAAGATCTTCGGCTCTCCTTGCAGTCTCTTCACGGCCCAACATCGAAGCTTGAATCCGAACAAACACAGCAAAACGACAATCTCTATTTCTCTGGAACAACACCATTAGGTTGCTTCGACGGATGGTCGGAGCAGCAACCCTCACCGACCATGGAAATCAGTCGATTTCAGAGGATATTGAATTGGAGCACAGTGAGTGCAGATCATAGTGGAGGCGGAGACGGCAAAGCTGGAGGTGTGGATGGAGAATTCTTATACAACTCGCAACCAACAAGCTCGAGTTTTCCTCCGCCATCGCCGCCGTTGCCAATTCTGCAACCGCTATTTGGAGAAAACCAGTTGGTTTCTCAGAGGGGACCCCTTCAGTCCAGTTACACGCCCTCGATTCGCGCTTGGATAGACCCGTCAATCGCCTTCATGGATAATCAGCAGCAGCTAATTCCACCGTCGATCTACCAATCTTCTTTTCCGGGTCTTGGATTCGCCACCGGCGGATTCTCCAGGTTTCTAATTCCGACGCGAATCCCGGGTGAAGAGGAACATGATGGTATTTCTGAAAAGCCATCCTCTGCTTCCTCCAACTCCCGCCATTTGAT | |||||||||