| mature miRNA: AAGCTGCCAGCATGATCT species: Curcuma longa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|87146072|gb|DY390683.1|DY390683 CL__Eb0004F16.r CL__Eb Curcuma longa cDNA clone CL__Eb0004F16 3', mRNA sequence AAGCTGCCAGCATGATCT EST sequence (targeted fragment marked with yellow): TATAGTATTGCTGATAAATTGATCTGAGCCTAAGCCTACTTATAAACCTATCTATTCATTTATTATCATATCTTCCTCTACCAATTCGAATATGACCAATTGCATATGCAGCCGCCGTTTATCAGTAACAACAGAGAGAAAATGCAGCAGAAGATAATGAAGGAGAAAATTAAGCTGCCAGCTTACTTGTCTAGTGAAGCTCATTCCTTGCTCAAAGGCGTAAGTTTGCAGCATTGCTTTGTAGATTAAACTTGGAATCCTTGTTGATCTCACATTCCATCACGTGGAAAGTTCACAAGGTGTTCTCTTTCTCCTTTCAGTTGCTCCAGAAGGAAGCAAGCAAGCGGCTCGGAAGTGGCCCTACTGGGAGCAATGAGATAAAGAACCACAAGTGGTTCAAGTCAATCAATTGGAGGAAGCTGGAGCGTCGTGAGATCCAGCCTAGCTTCCGGCCTAATGTTGCCGGAAAGGCTTGCATTGCGAATTTCGACAAGGAGTGGACAAGCATGCCGGTGTTAGATTCGCCAGTCGCCAGCCCGGTGACTGGACAGAATGAATTTCCAGGGTTCACGTACGTGAGGCCTGCTCCTTTCCTTCAGAAGCCTAGTCCTCTGAGCTGAAAGACTAGTATGGAGCTGGAATGCTGCTTGGCTATGGCAGTTTGTATTACAACATTTGATTTGTTTATTTTCTTTACCAGCCTTTTCTTCTGTGTTTATGTTTGTCTGTGTCCGGTTTCAATTTGCTTGAAATTTGTCTG | |||||||||
gi|87147750|gb|DY392361.1|DY392361 CL__Eb0006M17.f CL__Eb Curcuma longa cDNA clone CL__Eb0006M17 5', mRNA sequence AAGCTGCCAGCATGATCT EST sequence (targeted fragment marked with yellow): GCACCCGTTAAGAGGCTTGACGTGCTTTCCAACGAAGTCTTTGTCCCCTTTAAGATAAGCAGTGGGAGAACTTGCATTCTAGTTTCGGAAGAGGATGAAGAGGCTACTTTTGTGGATCCATCTCTGCGTGGAAAATACTGTGTGGTCTTTGATCCACTGGATGGTTCCTCAAACATCGACTGTGGTGTCTCCATTGGAACAATTTTTGGCATTTACATGGTTAAAGACAAGGAGAATGTGACTTTAAATGACGTATTACAACCTGGGAAGAATATGCTAGCAGCTGGGTATTGCATGTACGGCAGTTCTTGCACGCTTGTATTGAGCACTGGAAGTGGCGTGAATGGTTTCACTCTTGATCCTTCCCTTGGGGAGTTCATACTTACTCATCCATATATTAAGATACCAAAGAAAGGCAAAATATATTCAGTGAATGAAGGCAATGCCAAGAATTGGGATCGACCTACAACAAAGTACGTGGAAAAATGCAAATTCCCCAATGAGGGCTCCTCACCAAAATCTCTGAGATACATTGGAAGCATGGTGGCTGATATACATCGAACCCTGCTTTATGGAGGCATCTTTTTATACCCTTCTGACAAGAAGAGTCCTGATGGGAAATTACGTGTTTTATACGAAGTCTTCCCTATGTCATTCTTGATGGAACAAGCAGGTGGTCAATCTTTCACTGGAAAACAACGGGCTCTTGACTTGGTTCCTACGAAAATTCATCAGAGGTCACCCATATTTCTAGGCAGCTACGATGATGTTGAGGAGATTAAAGCGCT | |||||||||
gi|87149118|gb|DY393729.1|DY393729 CL__Eb0008L21.r CL__Eb Curcuma longa cDNA clone CL__Eb0008L21 3', mRNA sequence AAGCTGCCAGCATGATCT EST sequence (targeted fragment marked with yellow): CCCGCGCCCTCCAGATCTCGCTGGCAGCTGACACTTCTTCCTCGGGCGGAGCCACCACCCCCTCCGCCGCCGCCTCCCCGTCCCCCTCATCCGCCACCGCCTCCTCCTCCTCCCCTTTCCTCCTCCACCGCAACCGCCAGCTCGCCCCCTCCGCCGCGCCCCTCCAGCCGCGGAGCCACCCGCTCGGCCCCGCCTCCGGGGCGCGCGTCGCCAAGCGCAGGTCGCGCGCCACGAAGCGATCGCCCACGACCTACATCAACGCCGACCCGGTCAACTTCCGGGAGATGGTGCAGCGCGTCACCGGCATCCAGGTGGTTGGGAACCAGCCGCCCGCTCCCGACGCGTTGGTCAAGCCGGAGCCGATCCGGGCCGCGCCGGGCTCCCGCGCGGCCCTGCAGCAGCTCTGCCTGCCCACGCTCGACACCTCGGCGCTCTTGCTGGCCAACGGCGTAGGCTCGCTCGGGGCGCCTTTAGAACTCCCGGACTTCGACGGCGACGTCGCATTCTCGCCGGCCTTCCCCACCCTCGAGTCGTGGGGAATCATGTAACGGACGTTACATGCCGATTATCTTCTTTTCCCCTTCCTTCGTTAAAAAAAAAAAATCTTTTTTAATATAAAATGCTGTGTACTTTTTTAGCAACACCTGGAAACGTGTAGTAGATTTAGCAATCAACCACGTAGATGTGTAGTTTGTGTGATCAATAGTGAGTGGCTAATAATTACGATAAAGCCAACATCTTATTTTCAGATTTTTCGAG | |||||||||
gi|87146627|gb|DY391238.1|DY391238 CL__Eb0005C23.f CL__Eb Curcuma longa cDNA clone CL__Eb0005C23 5', mRNA sequence AAGCTGCCAGCATGATCT EST sequence (targeted fragment marked with yellow): GGCCACCGGAGGGGCGTTATCTGCACCTCAACCGCCGAATCCCTATCCTTCTCTCCGCCTCTTCTTCATCTTTTTCTTCTTCCTCTTCTTCCAATCGACTCTCGCTCTATATATGTACAAGCGTATGCATCTCTAAAGGTGAGGCTTGTGAGATCGATCTCAGTCGCTCGCTGCCGAGAAAGAGGGTTAGCGTCATGGATCACGAGGCGGATGCGCACCGGACCGACCTCATGACCATCACCAGGTACGTGCTCAACGAGCAGTCGCGGTACCCGGAATCGCGTGGCGACTTCAGCATCCTCCTTTCGCACATCGTCCTCGGCTGCAAGTTCGTCTGCACCGCCGTCAACAAGGCCGGGCTTGCTAAGCTCATAGGACTTGCTGGGGAGACGAATGTACAGGGCGAAGAGCAGAAGAAGCTTGACGTGCTTTCCAACGAAGTCTTTGTCAAAGCTTTGATAAGCAGTGGGAGAACTTGCATTCTAGTTTCGGAAGAGGATGAAGAGGCTACTTTTGTGGATCCATCTCTGCGTGGAAAATACTGTGTGGTCTTTGATCCACTGGATGGTTCCTCAAACATCGACTGTGGTGTCTCCATTGGAACAATTTTTGGCATTTACATGGTTAAAGACAAGGAGAATGTGACTTTAAATGACGTATTACAACCTGGGAAGAATATGCTAGCAGCTGGGTATTGCATGTATGGCAGTTCTTGCACGCTTGTATTGAGCACTGGAAGTGGCGTGAATGGTTTCACTCTTGATCCTTCCCTTGGGGAGTTCATACTTACTCATCCATATATTAAGATACCAAAGAAAGGCAAAATATATTCAGTGAATGAAGGCAATGCCAAGAATTG | |||||||||
gi|87144063|gb|DY388674.1|DY388674 CL__Eb0001F16.r CL__Eb Curcuma longa cDNA clone CL__Eb0001F16 3', mRNA sequence AAGCTGCCAGCATGATCT EST sequence (targeted fragment marked with yellow): AAGTTGCAGAGCCAATGGAAGTTCTGAGGAGCGCCGCACAGCAGCAGGGTAATGTGCCTGCGGATCAGCTGGCAGCATTATCGCTTAATGATAGTATTGTCTCATGAGTTGATGAATCGTGAGAGATTTAGCTGGAGGCTGTTTGATCGTGACCAGATAGTTGTAGTGGAGTTGGGTTGGCTCTCTCTTTACAACTGGATTCGACTTTGGCTTTCAGATTATTAAGCATGCTTTTCCCTCGTGCCGAATTCGGCACGAGGCACGAGCCATGGCCGCCAAGCTCGCCTCTTCGGCTGCCACCATGACCGCCCTCCCTCAGTTCAGTGGCCTCAAGGCCCTTCCATCGTCAAGGGTGACGATGGTGCCCAAATTCCAGCGAGGAGGAAACGGCGGCGGCGCACTTGGAGCTCGCTGCGACGGCTTCATCGGTTCACCTACGAATTTGATAATTGTGACGAGCACGACCCTGATGCTGTTTGCTGGGAGGTTCGGCTTGGCACCTTCGGCTAACCGAAAAGCCACTGCGGGCCTAAGGTTGGAGGTGCGTGACTCTGGGCTGCAAACTGGCGACCCTGCTGGGTTCACCTTAGCTGATACCTTGGCCTGCGGCGTTGTCGGGCACATCATCGGGGTTGGAGTTGTCTTAGGGCTCAAGAACTTGGGCGCCATATAAGAAGAAACAAATGTTGCTTTGTCGTTGTCTGTATTGTGATTTCTCTGTTTGTGTAGTAGAAGACTTCTTATGCTCCACCAACTAAAGGTTGAATCTCCCTGAATATAAATTGAATGTTGATTGCATTC | |||||||||