miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TGAAGCTGCCAGCATGATCT
species: Curcuma longa
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|87145723|gb|DY390334.1|DY390334 CL__Eb0003N08.r CL__Eb Curcuma longa cDNA clone CL__Eb0003N08 3', mRNA sequence 

TGAAGCTGCCAGCATGATCT
||||.||||||  |||||||
ACTTTGACGGTATTACTAGA

EST sequence (targeted fragment marked with yellow):
TTTGGAATTTGTTTTCCGAAAAAAATAGATTAAAAATTCTGTATATGTAACTAGGTCTAAATGTGAAGGAATCGACGAGATCATTATGGCAGTTTCATCTGCTATTGGGGAGCACAATCAAACCCTAGCTACCTGATCTTGCTTGCATACTTTTTTCTGTTTAAATTGGTGTCCATAATGATTTGCTTATGTGATAAGTTGGTGTTGCCTATGAAAGATGCTCGATAATATGAGGAAAAATTCCAGGGTTTGGTTTGGAATGAAGCTAATGGACATGATCAAGTTCTAGGTAGTAACTGGTGTTCCTTACTCATCATCTCGGTTTATTGGCGGATTCTTGCAAGAATATCGGTTCAAATGCTCGATATCAACTCCTCTCCGAGCCTTACAATTTATAATTTTATAAATAGAAGCATTCAACATGGTCATAATCATCCCTCTAGGAAAGTTTTTTTTCTCTATCTATCTTTTTGTTTTTCTACTTCTTTGTTCTACATCACTAATCTCTTGTTTGTTTGTTTGTTTTTTCGAAAAGGTTAGAGCAATCAGAAGATGATCAATTGGCAAGCTTGTTTCAATAAGTAAAGATCAAAAGTATTTTGTTGTGAAGGAGAAATATGTGACACACAGCATTGAGAATAAACTTTAGTCAATTTAAAAGGTGTTCTAATTGCGCATTTAAATTGGAGGATCATATAAAAGAATATTCTTGGTAATGGGAAAACTTAGAAATGAAAGT


gi|87147578|gb|DY392189.1|DY392189 CL__Eb0006I18.r CL__Eb Curcuma longa cDNA clone CL__Eb0006I18 3', mRNA sequence 

TGAAGCTGCCAGCATGATCT
||||.||||||| |||||||
ACTTTGACGGTC-TACTAGA

EST sequence (targeted fragment marked with yellow):
AATGAAGAGGTTGAAGCTGCCAGCATGATCTGGTCATGTAGTTCCTTCTGCTTGCCTTTTCTTTGAAAGATTTTCGCTAAAAAAAAGTCATCTTTAATTCGAGTGTTTCATCGCATCAATTCTTTTTTCACGTTGTAACTAGTTTTAAGTTTTGCCGCCTTCTCTCCTTCCTTGGTATCTCTATATTAAATCTTCGAAATGAATTCTGCAGAGTTTCAATCTGATTTCTATTAGAAAAGAAAAGAAACAAAAAAAAATTTAGTGTTCGTGTTTGCAGGTATCTGTGGAAGAAATAGTGCAAGTTTTGATTTCTCAGGAATTAAGGATAAAGAAACTTTAATTATCTAAAAGTCTAATAATGATTGATCAAATAATTAAATTTTCCCTTAAATTCAAGAGAGCGAAGAGGAGTAGGCATACCTTGTTTTCATTTCATCAGATCATCTGGCAGTTTCAATCCCTCAATTCACCAACAGAAGGCGAAAAGTCTGGCAGAATGCCTGCGTGATCAAGAGGAAACTCAAGAAGGTAATAAATGTGTTAATTGCCTCAACTCAAGAAGTCATATTAATTGATTCTTCCTTTTTATGTGCATATCCGTCACGAAATGATGAAAGTTCTAAGTTTTTTTTCCTATCTGTTCTTGGTTGACTAGGCTTATTCTCCTAGATTATTATAAATATCCATTTTGTACATCATACTGTTGTTATAAATTATTATAGGAACTTAAAATCATACGGTTTTTTTTCTTC


gi|87142872|gb|DY387483.1|DY387483 CL__Ea0008N15.r CL__Ea Curcuma longa cDNA clone CL__Ea0008N15 3', mRNA sequence 

TGAAGCTGCCAGCATGATCT
|||||||||||. | |||||
ACTTCGACGGTTCT-CTAGA

EST sequence (targeted fragment marked with yellow):
AAAATCCAATGAGGCAACAAGTGCAAGATCCTACAAGAACTTCCAGATCTCTTGGCAGCTTCACACATGGCGTGAGACGAGGAGCAGAAAATCCAAATGTCGATGCCAATGGAAACTCATTTGACTCCACAATCAAATTACTTCATCTAGCCTGGCATCCAACTGAAAACTTGATAGCTTGTGCTGCTGCAAACAGCTTGTACATGTACTACGCATGAAGATTTTCTTGAAGTACCTTAAGGCAGCACCTTTAATTTGGGTTGCTATTTGTGAAGGCTACGTGGTCTTTCAGCTGCAACCAACAAGGGACAGTGGATTAATCTCACATGATATCGACTTCGGAGCCCCCAAGAGACTATGAAACCCACAAGACAACTAAATTGTTGTTTACTTTGTCAGCCTCTGAATATGGGGAATCTGTATTCATATTCTTTTATTTCGGGGAGAGATCGCACATCTGTTTTACTTTGTTGAGCATCAGGATCCCAGTTAACTTTAGCTCTCCCCCAACTAATCTAGGGGGCAGTTTGATGGGTGTGGATAGTGTCTCTGGAGGGACTGTTCTTCACTTAATTCTACAGTTTGTCTGTAAAAGGCATAGCTCATAATCTTGCAATAGTTCCTATTATGATTGTTGTCCACCTTCTGACAAGTTACCATTATTCATGCGTCTTTCTATTCAATCATACT