| mature miRNA: AAGCTGCCAGCATGATCT species: Cycas rumphii database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|158967200|gb|EX920949.1|EX920949 iy84d12.g1 Cycas ovule - normalized (NYBG) Cycas rumphii cDNA 3', mRNA sequence AAGCTGCCAGCATGATCT EST sequence (targeted fragment marked with yellow): TCAAAGTAAATAACATCAAGCATTTAACAAAAATTATAAATATATACGGCAATAAGAAATGGTAAATGACACGCAAAATTTGTGCATTAAGACATCATACCATTTCCTGTTGAATGCGCTCAGAAAATTAGTCAAATCTCTAAAGCTGCAAATAACTTTACAGTTCTAGAGGGCTTCAAACAAATTTCTTTTGCATGACATATCTGTTTACAAAAGCCAAACAAAAGACGTTTTGGGCAGCTTACACATCATCACATGCTGTTAATCTTGCAACTCAATGAACGCTACGGGACTTCACGGGCAGGCTCCAAAGTACCAGTTTAAAAGCGATGAAAAGGACCCTTCATTTAATTGTATCGCATCTACTGCTCCCAAACTTCATGGTGTGCCTCCACGCGGGCTTTGCGTTATTAACTCCAGAAGCGAGTGGTCCACGAAACCATCATTTCCCTCCGAACCCCAAGCTGCGTACACCTGCATTTAGCGTCAGGGACATCCCTATTAACATTTAAATAAATAAATAAACATTAGACATCATCATTTCAACATGGACAGACGCTTGATGAATCTGAAACTCCAGAGGTGCTGCGTAAATTGTTATAATAATGTCTGCAAGGGAGTTGCTGAGACTGCCACATGATCTGGTACCCAAAAGCAACTGGCGAGAGCAATATTAACCAGATCATGCTGGCAGCTTCAGCCTCTCCCACGAACACGAACAAGATGCTCC | |||||||||
gi|27915798|gb|CB091606.1|CB091606 he94d01.g1 Cycad Leaf Library (NYBG) Cycas rumphii cDNA clone he94d01, mRNA sequence AAGCTGCCAGCATGATCT EST sequence (targeted fragment marked with yellow): GGCCGGCCGTCCGAGATTCGTTTTCCGCTGCTGTTTCTGCATAATCCCTCTTCAGACCTCATCTGTGCTGGAATTCTCTATCTCAATCAGTCGCTTGGAAAGGAAATGAGAGAAATTATCAGTATTCACATCGGCCAAGCGGGGATTCAAGTGGGAAATTCGTGCTGGGAGCTTTACTGTCTGGAGCATGGAATTCACCCCGACGGGACGATGCCCAGTGATGCGTCCGTGGGTGTGGCGCACGATGCGTTCAATACATTTTTCAGCGAGACGGGAGCGGGGAAGCATGTGCCAAGGGCCATATTTGTAGATCTAGAGCCCACGGTCATCGACGAGGTCCGGACCGGAACATACCGGCAGCTCTTCCATCCTGAACAGTTGATCTCCGGCAAGGAGGATGCCGCCAATAATTTCGCTCGCGGTCATTACACGGTGGGCAAGGAGATTGTTGACCTTTGTCTGGATCGGGTGAGGAAGCTCGCAGACAACTGCACGGGTTTACAAGGATTTTTGGTTTTCAATGCTGTTGGAGGCGGAACTGGATCTGGTTTGGGTTCCTTACTTTTAGAGAGGCTTTCTGTCGACTATGGCAAGAAGTCAAAGCTCGGATTCACCATTTATCCTTCGCCTCAGGTCTCTACCGCGGTCGTGGAACCTTACATAGCGTCCTCTCAACTCATTCTTTGC | |||||||||
gi|27915409|gb|CB091217.1|CB091217 he89g10.g1 Cycad Leaf Library (NYBG) Cycas rumphii cDNA clone he89g10, mRNA sequence AAGCTGCCAGCATGATCT EST sequence (targeted fragment marked with yellow): GGCTTACCGTGGTGTCCCTTTGAAAGTAGGGTCTTGGATTTTAGGACCCTTACTGAATCTGTTTGTAATTCCACAGGAACTGCGAAGTGCACAAGGTGGTGCAGAATCTGACATTGCGCGTGCTTGCCAAAAACTGCTGGATGAGAGGCAGAGTAAGAATGTCATGCGATTTCTGCAAGCTATTAATGAGAGATATGATCTTACCGAGGGGTTGAAGAAACTGCAGTGTAGGACATTGATATTTGTTGGAGAGAATTCTATTTTCCATAAAGAGGCTCTTCACATGAATGCTAAAATGGACAGAAGATGCAACGCCTTGGTTGAGGTTCAAGCTTGTGGATCTCTTGTTACAGAGGAACAACCTCATGCAATGCTAATCCCAATTGAATACTTTCTGATGGGATACGGATTTTACAGGCCCCCCCAGTTATCCTCGGGGTATGGATCTACCCCAACTAGTCCTTCAAGTCCATCCATCCCAGCTGAATTGCTCTCTCCAGAGAGTCTGGGCCTGAAGCTTAAACCTATAAAGACACGTCTGGCAGTTGATGAGTAAGCCGGTCCATTTTCTCCAGGACAGAGATGCTATTTTGTCTGACCTTCAAGGGGAATGAAGATGGGCATGCTGGCAGCTTATATGAGTGTTATGTGCTATAGCAATTCATTACTACAAACAAACCTAGTTGTGGACAATAATTGTCG | |||||||||
gi|27916008|gb|CB091816.1|CB091816 he96h05.g1 Cycad Leaf Library (NYBG) Cycas rumphii cDNA clone he96h05, mRNA sequence AAGCTGCCAGCATGATCT EST sequence (targeted fragment marked with yellow): GCTGCATTCTATTCTGCGTGGTTTCCTCGCGATTCCCAGGTGATCGATAGGTCGATCAGATTCATCAGGGTTGTTGAAGATGTCGACTAAGTACATTGTATCAGCTCTGGCTGGTAGCTTTGCGATCAGTTATGTATTCTACGATCTGACCCGGAACAAGAAGATTTTTGGAGGTACTGTCCCTGCAACAGTTGCAAATAACGAATGGTGGGAGGCGACGGACAAGAAATTTCAAGCCTGGCCTCGGGAAGCTGGTCCTCCAGTGGTTATGAACCCAATTAGAAGGCAGAACTTCATAGTGAAGACCTCACCATCTGAATCCTAAATTACCATGCCGTTCATGCGACAGCTGTGCATCCTGTGTGGATAATCCTGCCTCAAGTACTAAATCTATTTTTTGTCTAATGAGCTGTTCACTTTGCCTGCAATCAGAGATTTGTTCTCTTGATTTTGACATGATTGGAATTGAAGACAGATTTCAATTTGCTTGTTTTTTTGTTTTACTAAATTTCTGATTATTAACGCATGAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|158978698|gb|EX930165.1|EX930165 lb33b05.g1 Cycas ovule - normalized (NYBG) Cycas rumphii cDNA 3', mRNA sequence AAGCTGCCAGCATGATCT EST sequence (targeted fragment marked with yellow): TTCACAGTGTCCCAGCTTCATGGTATAAATACAAGCCAAGGCCAAACCGAGCACATGCTCTTGGGAATGCAATTGCCTCTGCCTTTTGTACCAGGTCCCCAGTTTGATCATCATCCAGGGATGCAGTACCCGATGATTCTCGATATGTCTCTCCATCAGATCCTCGAATTGTTACTCTATATACCACTGACACAGAGCTACAATCACCAGAGAATGTGACACTACGAATTTCTCCACACCAACCTGGAGCATAAAAGCTAAGCATCCGATTTGCATGGTACCAGGGAATGTATTTCTCCTCAAAGCCACCTTCCTGTCGGAGTTTGATGACTCTATCAGGAACCCTCTTGTTCAAGTCCCGCAATATCTCTACCAATGGACGAGTTATGCAAGATGAAGCTGGCAGATTGTCAAGAGGCATTGCCGAGTTGGCATGAGGGGCTACCTTCTTAACACTGTCGCCTGCCCTTATGCTCAACACTCTTCTGTCTGAGGGAATGGCCTTCAAATCTGCCCCCAAAACCTTCATACGATGTGATCCTATAAATGGTGATCTGGTCTTAGATATTGTTGCAGAAGGGGAATGGGTATTTAAGACATTCTGAATCAGGGAAGCTGCCTCCATCGTATGACC | |||||||||