| mature miRNA: TTTGGTTTGAAGGGAGCTCTA species: Cycas rumphii database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|158968581|gb|EX922037.1|EX922037 la62b05.g1 Cycas ovule - normalized (NYBG) Cycas rumphii cDNA 3', mRNA sequence TTTGGTTTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): GCAGCTATAAAAAATAAATGATCAGCAACATCTCCCTGTCATCTCAGTACCCACCTTTGAGATCATTGACGACATCATATGGAATGGGTGTTACTGTCTCCAATGTCGCACCCTCCACAAGAAATCCTGGTTTAGGACCTTCTGGTTGTCTCTTTGTGCTGATAATCTCACCACGGGCTTTGGCCTCAGCCTTCAACGCATCATTCCTTATTCTTCTTATTCTAACTTCCTCTCTGCAACGAGAAGGCTGCACATGTTCAATTCGGACATGAATTCTCTTCTTGACAATTCTGTTGCCGACTTGTTTATTCATCTCGACACCGATCGCTCGCTTGGTGACGTTCCAGACAACACCAGTGCGGCCGTGGTAAAATTTATGGGGCATACCTTTGTGAACGGCCCCATTGACCTTGATATCAACATACTGTCCAATCTTGTATGTTCTGAGATATGTTGTGGTAGGAATGTACCCTCTTCTTCTGAAGGGCCTAGCGAATAGGTCTCTGGTTCGCGAACGCTGACCGTGTCCTGCCGGCATTTTCAGAGAGTTTTCTTCAAACCAACC | |||||||||
gi|66986701|gb|DR063133.1|DR063133 iq26a09.g1 Cycas ovule (NYBG) Cycas rumphii cDNA 3', mRNA sequence TTTGGTTTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): GATATCAACATACTGTCCAATCTTGTATGTTCTGAGATATGTTGTGGTAGGAATGTACCCTCTTCTTCTGAAGGGCCTAGCGAATAGGTCTCTGGTTCGCGAACGCTGACCGTGTCCTGCCGGCATTTTCAGAGAGTTTTCTTCAAACCAACCCGCTTTTTTTTTTAAATTCAACTGGTTGGATTTATTGTGAAGTAGCTAATAACCATACAGTGGGGTCCACCACATCAGGAAAATCTCGCGCCTATACAAATGAATGGCGCGGTATGTATTCCTCTGACCACACACAAACACACACCGTCAATCCTATCCATGGCTTCATGTGATGGACAGAGTACGGATCAACTCACATAATGACACGTAACGATGGGACGTCCATGTGAGAAGCACTTCACTTGCCAAATGCACATTGACCATAAAAAGATAATACAGAACACAGGAGACAACAAATGTAGCTTAGATGGAGGGTTTGGTCATCATAATCTTAAATTCTTCAAAATTCACGAGGCCATCTCCGTCCCGATCGACGCTTCTGATCATGTTAAGGCAATCGCCCACGCTGCTCTGGTCTCCCATACGCTTCAATACCTTGTGGAGTTCGAGGGCGGAGATTGATCCGCTCTTATCCAGATCGAACATCTGGAAGGCGACCTTCAGATCTTCAAGACAGCTGCTCTTCTTGGGGTTGGTGTTGAGATGGATGAATTCCTGCCTCGTGCC | |||||||||
gi|27913934|gb|CB089742.1|CB089742 gp28c01.g1 Cycad Leaf Library (NYBG) Cycas rumphii cDNA clone gp28c01, mRNA sequence TTTGGTTTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): TTGATATCAACATACTGTCCAATCTTGTATGTTCTGAGATATGTTGTGGTAGGAATGTACCCTCTTCTTCTGAAGGGCCTAGCGAATAGGTCTCTGGTTCGCGAACGCTGACCGTGGTCTGCCGGCATTTTCAGAGAGTTTTCTTCAAACCAACCCGCTGATACAAAAAGAGGAGCAGGAGGAGAAAAAAAAAAAAAAAAAA | |||||||||
gi|158961082|gb|EX919846.1|EX919846 lj35h02.g7 Cycas sporophyll (w/o ovule) (NYBG) Cycas rumphii cDNA 3', mRNA sequence TTTGGTTTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): CAAAGGGGTTCAATATTAATTATTACGATCCGCATTTAAAATTTAAGTAAAACACGGCAAAACATCAGCATTCGTTAAACCTCGGAATTGCCTTTCGATTTCTATTCTTTTCATGAAGCGAATCAATACGTTAATACATAATTAGAATTTTCAAGGGATATTATGAGTCATGGTCTGCACAGACAAACAAATACCGGCCAAAAAGCCTTGAAAAGCACAGCACTCATAGATGCCATCATATAATCCGATCCTGCAACCGTATGGCACTTCGAGGGAATCCGACATGAAACAAAGCGTGCCGAAAACGTTCAAACTAAACAGCAAAACCTACCGAGACTGGTATTCCCCACAGTTAGCAATGCAAACGAATAAAAGACTCCTGTAGAGCTCCCTTCAAACCAAAAAAGGGAAGCACACGGTCAATACAGCTCCTGCGTCATGCACACCGCTAGCCCTGCCATGCAACTCTGGAATCCGAGGACGCGATCAGGGCAGCGGAATGCATAAATCAGCAGCTGAACCGACCTTGCGCAAGCCTTGATTGGACTTCAAGGAGCTCTACAATCTCCTTATTCTCACATATAATCCTGCATCATACAACCGTGTTTGTAATACGTACCTCGGCCTCGAGGAGGAAGAATGATGGAACCGCCACGGTGCAGCCGATCATATCCCCAAGGTCGCTATAACTGATC | |||||||||
gi|158974063|gb|EX925723.1|EX925723 lb32h12.g1 Cycas ovule - normalized (NYBG) Cycas rumphii cDNA 3', mRNA sequence TTTGGTTTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): ATAGAACTTCAGATATGTATAGAAACTCATCCCTTTAAAAAGTCAAGCACATAGCAGAATTATCCACGTACCAGCAATAAGAAAATACAACAATCCAATATGCCAACAATTGAAAAACAAAATTGTTGATTGTCCAGCAACCTTCCAGCTTAAATATAACAAAAAGGTTTCTCGCCTAACGGGCAGCTATAAAAAATAAATGATCAGCAACATCTCCCTGTCATCTCAGTACCCACCTTTGAGATCATTGACGACATCATATGGAATGGGTGTTACTGTCTCCAATGTCGCACCCTCCACAAGAAATCCTGGTTTAGGACCTTCTGGTTGTCTCTTTGTGCTGATAATCTCACCACGGGCTTTGGCCTCAGCCTTCAACGCATCATTCCTTATTCTTCTTATTCTAACTTCCTCTCTGCAACGAGAAGGCTGCACATGTTCAATTCGGACATGAATTCTCTTCTTGACAATTCTGTTGCCGACTTGTTTATTCATCTCGACACCGATCGCTCGCTTGGTGACGTTCCAGACAACACCAGTGCGGCCGTGGTAAAATTTATGGGGCATACCTTTGTGAACGGCCCCATTGACCTTGATATCAACATACTGTCCAATCTTGTATGTTCTGAGATATGTTGTGGTAGGAATGTACCCTCTTCTTCTGAAGGGCCTAGCGAATAGGTCTCTGGTTCGCGAACGCTGACCGTGTCCTGCCGGCATTTTCAGAGAGTTTTCTTCAAACCAACC | |||||||||
gi|158969170|gb|EX922627.1|EX922627 la69a12.g1 Cycas ovule - normalized (NYBG) Cycas rumphii cDNA 3', mRNA sequence TTTGGTTTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): CTGCACATGTTCAATTCGGACATGAATTCTCTTCTTGACAATTCTGTTGCCGACTTGTTTATTCATCTCGACACCGATCGCTCGCTTGGTGACGTTCCAGACAACACCAGTGCGGCCGTGGTAAAATTTATGGGGCATACCTTTGTGAACGGCCCCATTGACCTTGATATCAACATACTGTCCAATCTTGTATGTTCTGAGATATGTTGTGGTAGGAATGTACCCTCTTCTTCTGAAGGGCCTAGCGAATAGGTCTCTGGTTCGCGAACGCTGACCGTGTCCTGCCGGCATTTTCAGAGAGTTTTCTTCAAACCAACCCGCTGATACAAAAAGAGGAGCAGGAGGAGAAAAAAAAACAACAGC | |||||||||
gi|158971268|gb|EX924626.1|EX924626 lb20c08.g1 Cycas ovule - normalized (NYBG) Cycas rumphii cDNA 3', mRNA sequence TTTGGTTTGAAGGGAGCTCTA EST sequence (targeted fragment marked with yellow): AGCTAGAGATGGAAGATGAAGCAGGACGTCGAGAGGCTCAGTATCTCCAGCCAATACTAGGAGTCCCGAGATTCCTTTATTCAGAGACTTCGTTGCTGCACAATATCAGCAATCAAATCATTATTGGAGATCTCAAATCAGTTATAAAGAAAAGATATAAATCTTTAACAATAGCTACCCCAAATATTATCGATACAATCAAACCAATTATAAATTGAAATCTTAAGGAGGGTCCCCCCACCCGGACCTTCATTGGCACCCATCTTAAGTATCTTAAAGAAAACAGCCCGCTGAACTACATTCAGAACGGTACCAGTAAACTGTGCATCCGCCAAGGGGTAGTCCCTCGGACTAACCGGTCCAGAACCCTGCATAAAAATTAATGCCCGGCGAATCTCTCACTAGAAGTGTTTACATTCAGCCTAAATCAGGAACCCTAAAAATTCAAATACCAAAAGAAATGGAAACCCCGAATTTGTTAATTCCAGTTACAAATGGCCAGATTCCCCAATCCCTCGGTCATGTCGGGTCGTGTTCTGACACACCGATAATGAAAGCTGTGGCGTTGAGCTCTATTTAAACCAAATCCACTTTATCGATC | |||||||||