| mature miRNA: GGGTTATGGAATAGGTTTTAT species: Cynodon dactylon database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|209858049|gb|ES292872.1|ES292872 _04Y_A05 Bermudagrass Normalized cDNA Library Cynodon dactylon cDNA 5', mRNA sequence GGGTTATGGAATAGGTTTTAT EST sequence (targeted fragment marked with yellow): GCCGGGGGGTTCTCGCATTACCCCTCAGCAATTTGGGTCTCCAGGGTCGATTTCCTCAAGGTCTTGAGAAATGTACAAGCATGATCGGCTTAGACCTGTCAAACAATGATTTTTCAGGACCCATCCCATCCAACATTGCACGACAGATGCCGTTTCTTGCATCTCTGAACCTCTCCTACAACAGCTTTTCTGGTGAAATCCCAATCGGAATCTGGAGCATTACATTTTTGAACGTCATTAACCTCCAGCACAACCAGTTCAGCGGTCAAATTCCAGATCCATTCAGTTTGTTAAATCGGTTAACATCGTTCAGTGTTGCAGAGAATCAGTTATCTGGACCTATTCCGTGGGCATTACAGAATTTTTCGGTTTCAAGTTTTGCTGCTAACCAAAAGCTTTGCGGTGCACCGTTAAGTGACTGTCCCAGTAACAGGAAATGGTGGCAACAAGTAAGGCTGCCCAGAATCAATGATGAGTCCAGTATCGGCGCGGCTGTTGGTTTTGTCGCGGGGTTCGTGCTGGCCTTCTACTTCCCGCGCGTCTTCGGGTGTGTTCGGTTTCACCCCTCTAAATTTAAATTTTAGACCTGTCACATCGAATATTTAGATGCTAATAAAATATATTAAATGTAAATAAATAACAAAACCTATTCCATAACCCCTCTAAATGACGAGACGAATTTTTTAAGTCTAATTAGACTATGATTAGACAATGTGATGCTACAGTAAACATCTTCTAATTATGGC | |||||||||
gi|209861878|gb|ES304134.1|ES304134 -47-K17 Bermudagrass Normalized cDNA Library Cynodon dactylon cDNA 5', mRNA sequence GGGTTATGGAATAGGTTTTAT EST sequence (targeted fragment marked with yellow): GGGTCTCAAAGAATTTTTCTATGCTATCATTGTAAAAGTGCACTACAACTTATAATTAATATTGTGCAATAATTTATATCAATGTAAGGCCTTGTCAAAAACTGAAATGCAACATATTTTTATGATATTCCCTAGAAACAACTTTTTGAAAAGGTTTGTGTGTTCACTGGAAAAGTTTATTTCAGTTTAATTTGCCATGTGTTATCTAAACTTATTTTGAAAAGTTATGACAATCACTTACGTTGATAATTTTTTTAGATCAAATAACTTACTAGAAAATTTATTTTTATCTTTAACTTAGCAGTCAAATAAGTTAAAAAAACTTATCATCAGAACCTATAATATAGTTCTTGAAAAGATTTTTCCTAAAACGGTTAGGTGCAACTTATCTTATATTATGTTTATCATGAAAAATATATTGCCATTATCATAAAAATTGTTCCATAACTTATGAGAATGTAAATTATTCCGTATTTATTCTAATAGCATCGTATGTCTCATGTTGTATAGTAAGATAGTAATATTTCACACAAGAAGCCTGCTCTATGGGCTGCATCATGATTAAGAAAAAAAAATTAATTATACAACAAGGTTGTCATTTCTCTAAAAATATTAGTTTCACTTTTGTTAGATACATAGAATCCTATAATTATAACCACCAATAACATGCAAGTTGTGGTGTATTTGCTGGTGATATAATCCGTACTGACGGTGACTTTTGACAGCTTAAGTTGGAAAGGTGGTGTTACAGGTGCACCTATTTTTTATATTGAATATTACATATATTTTTTTA | |||||||||
gi|209848555|gb|ES306378.1|ES306378 -53-N17 Bermudagrass Normalized cDNA Library Cynodon dactylon cDNA 5', mRNA sequence GGGTTATGGAATAGGTTTTAT EST sequence (targeted fragment marked with yellow): GGGGACTCAAGTCGGTGCTGCGGATTTGGGTGCGAAGATGGGACTGTTGTCTGCTGGGTTCGAGTTGTCGGGCGTCTACTTTGAACATGTGGTTCGGAGTAGGCTTGGCTGGTGAACGGCGTTCGCACCTTACCATTTGGCTTTGCGAGTCGAGCTACACACTTGACCATTTGGCTTCATGCTCGCAATCACGGCCATCCGTAGCACAGAGGCACTTGGCTCAATGAGCACGTGCTGACTGGTGAACCAGTGGGTGTCTGAGCTTGGAAGCTGAGTTACGCGTGTACCTCAGGGGCTGTTCGGTTCCTCCCCGTTAAATTTTAGACCTGTCATATCGAATGTTTAGATACTAATTAGACGTACTAAATATAGATTAATGATAAAACCCATTCCATAACCCTAGCGTTAAATGACGAGACGAATTTTTTAAGCCTAATTAGACTATGATTAGATAATGTGGTGCTACAGTAAACATCTTCTAATGATAGCTTAATTAGGCTTAATAGAATCGTCTTGCGAATTACTATCCAACTATGTAATTATTTTTGTATTTAATTTATGTTTAATTATACTATTTAGCAAATAAAGATTTGATCTGACAGCACTAAATTTTAGCCCCAAAGAAACGAACACCCCCTCGGCTGGCTGGAGCGGGGGGCCTTGTTT | |||||||||
gi|209861489|gb|ES298561.1|ES298561 _33X_A12 Bermudagrass Normalized cDNA Library Cynodon dactylon cDNA 5', mRNA sequence GGGTTATGGAATAGGTTTTAT EST sequence (targeted fragment marked with yellow): TATCGGAGAGATCTCTATTGTTGAAGGAAGCCAAAGCACGAGCGCCAGGACGCCCAGCAACTAAAACTAAAAACACACACAGGCTTTTGTTGCAGTAAAGTCCGACTTCCGGATTCCTTCCCTACCCAAGGTCGCCGCTATCCTGCAATCTGCCCGTCCATACGTCATTGCTCTCCGTTTTCTCTCGTAAACTACTGTCCAGCTGAAATACTGTTGCCATGAAACTGAACTCAAATGAAGGATTGCCGCCCTTCTTAGGCCCTGTTCGGCAACACTCTCTAAAAATTTTAGACCCGTCACATCGAATGTTTAGATACTAATAAAATGTATTAAACGTAGATAAATGATAAAATCCATTCCATAACCCCCCTCTAAATGACGAGACGAATTTTTTAAGCCTAATTAGATTATGATTAGACAATGTGATGCTACGGTAAACATCTTCTAATTAGAGCTTAATTAGGCTTAATAGAATCGTCTCGCGAATTAGTATCGAGCTGTGTAATTAGTTTTGTATTTAGTTATCCTATTTAGCATATAAAGATTCAATATGACAAACTCTAAATTTTAGACCTTGGATCCGAACACACCCTTAGTTGTTATGGTCCAAGATA | |||||||||
gi|66246950|gb|DN987123.1|DN987123 MSU28_F_PLATE_2_H10 Bermudagrass cv. MSU subtracted cold acclimated cDNA library Cynodon dact GGGTTATGGAATAGGTTTTAT EST sequence (targeted fragment marked with yellow): AGTGGGGCCTTTTCCATAACCCCCGCGGGAGGAATTCAATTCTGGGGAAGGGCTTCGCCCCCCACAGGGGGTGGTGGGGCCAAACCCCCCGTTCTCCCCCACACCTGCCCCTATTCTGGAAATATTTTTTTTTAACCACAACCGGAAAAAACAAAACATTTTTCCCTCGTGTGACAACCCCCGGGGAAAAAAAAATTAAAAAAAAAAAGAGGGAGTATGCGGGGGCTTACACAAATTTTTATATGAGAGGGGCCAAACACACACCGATAAACATAAAAAAAAAAAAATTTTATTTTCTTCCCGTCCTTTCTCTTTAAACCCACCTTTTCTCTTTCTAAAAAAAAAAGAGTATTGCTCCTTTTTTTGTGTCACCCACACAAAAAACCCCCTCCCGCTCGGAATGCGGCCCGCCCGTTGTTTTTTTTTT | |||||||||
gi|22099426|gb|BQ826379.1|BQ826379 OK-YZ-B216 Bermudagrass cv. Yukon SSH Library Cynodon dactylon cDNA clone 91-215.M13 similar GGGTTATGGAATAGGTTTTAT EST sequence (targeted fragment marked with yellow): AGCGTGGTCGCGGCCGAGGTACTAAATATAGATTAATGACAAAACCCATTCCAAAACCCTAGGACTAAATGACTGAGACGAATTTTTTAATCCTAATTAGATCATAATTAGATAATGTGATGCTACAGTAAATATTTTTTAATGATAGCTTAATTAGACTTAATAGAATCGTCTCACGAATTACCATCCAGCTGTATAATTAATTTTATATTTAGTTCATATTTAATTACCCTATTTAGTAAATAAAGATTCGATGTGACAGCCCTAAACTTTAGCACCAAAAAAACGAACAGCCCCTAAGACACAAACCACAAGATACTTCACGAGAACACCCTTCAGGATGAGAGACCAGACACCAAAGGCACCAGACGATCCAGGCAGCAGCTTCAACAGGGTGGCTTACTGACCACCACGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGCAAGAGTGCGGCCATCCTCCAACTGCTTACCAGCGAAGATCAGACGCTGCTGGTCCGGGGGAATCCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCAATGGTGTCAGAACTCTCAACCTCCAGGGTGATGGTCTTGCCAGTCAACGTCTTCACAAAGATCTGCATACCACCTCTCAGACGGAGCACCAGGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCAGCAAGGGTACCTTGGCCGNGACC | |||||||||