| mature miRNA: TCGTGCCACGCTGTGTGC species: Elaeis guineensis database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|161979053|gb|EL694323.1|EL694323 OPR04386 Elaeis guineensis root Elaeis guineensis cDNA clone OPVRXX_A4067.seq, mRNA sequence TCGTGCCACGCTGTGTGC EST sequence (targeted fragment marked with yellow): ACAGAGCTGCATGCTGCGTGGTATGGGGTTAAGATAGCAATATCTAATCTTCATGCTTCTAAAATATGGCTCGAGGGTGATTCTGCAACTGTGGTTTCTTGGTTAAATGGTCTCACCATTGAAAAGCTTGATCATATTCCTCTGGTCAAGGATGTAAATCAGTGGAAAATATCAAGAATTTTTTATTAAATTATAGATATTTATAGAGAAGCAAATCAAGTTGCGGATTTTATGGCCAACAAAGTCTCACAGGGCAGATTTTGAGTGGACATCTAAGGCTGCAGTTGTTATTGAGTGTAGAAATCTGTTACAGACCGATGCTTATGGAATTCAATATGTTAGAGATCTCCGAGAGATACTGGTGCCCTTTAGTAGAAAAATTTTTTGGTCATGTTCAGGCTTGTAAATACTTTGACTGTATTGGACAGGTTTATCAAAAGCATCTAAGATGGCAGGAGGTTAGGAGAATATCTCAGAATGGCATATTGCGAACAGGAATCTTTGGTG | |||||||||
gi|191200119|gb|EY402442.1|EY402442 pOP-CNH03260_EST_C_1_pSK_SK CNH (Oil Palm Non-Embryogenic Callus) Elaeis guineensis cDNA clo TCGTGCCACGCTGTGTGC EST sequence (targeted fragment marked with yellow): GAAGAGCAATCATTTGAGAAGATTATACAATTTATGAATATCTTGATTATTTCTTGGATTTTAGTTACTAACTACATATGAGAAGTGCTTTGTCACATGGTGACCGGTACATGCCCCGGAGAATGAAGTGCAAAAAGGACAGAGCGTGGCACTACATGGCTCTAAATGTTGGACATGAACACAACCTAAGCAAACAAGATGAGTATTATAGAGATGAGAATATTGAGAAAGACATCAGGTAAAGCTAGCAAGGCCTAATAAAGTAGTAGGAGAGGTCCCAATTGAGGCTAAAGTGATAAAAGCCAACTTTTATGTTTTAGATGGCAACCATAGGTTGTCAATTTTGTATTAAAGAATTATGAAAGAGGATAAGCCAACAAAGAGGAAGGAGGAAAGAAAAATGATGGGTAATGTAAGAAGGAATATAAAATAGCTTGCATCAATAAGAATGTTCATAAATAAAGATTTACAAAGCTGACATTAGGATGGTTGGTGCACAGGTTCATGCCCAACGTAATGGTTATAAGTTTGGTTGGCTCCCAAATGATTATACTAAAACAATC | |||||||||
gi|161971267|gb|EL684039.1|EL684039 OPMF00273 Elaeis guineensis mature flower 26 cm Elaeis guineensis cDNA clone 118-H02-T3.seq, TCGTGCCACGCTGTGTGC EST sequence (targeted fragment marked with yellow): TGGACGAGGAGCGAGAGGGGCGCCATGAGACGCACATGGCGTGGAACGATCACCGTCGATCGTGCCACGCTGTGTGCGTCTGATGCGCTCTCTCTGATGTGACTCCGGAGGTGCAGTGGACGTCTTGGAAGAGCATTCGTGGCCGTGGTGGGAGTGCCTCGGAGGCGTCGCCGGTACCATTCGTCACCATTAAATAGATCAATTCGCGCAGTAGCATCCGTTTCATGGTTGCACATGATGCAAAGGAATTCTTCTGGGTCAACAAATATATAGGTCCCCATGCGCCTGGTGCCGCGCCCGGCTTGCGGAGCCGGAGACGCCGCATACCAGCGGATAGGATGGACTCGAAGAGGCAGAGCGGACGGCAGATCTGACGATCGCATAGAGTTGTATATGAGTGCGTCCGCGGGACAACATGGACCTGGCCCGGAACCCATCGTATCACGTCACGTATGACGGCAAAGTCAGGCGTGACGGAAGGGGGACAGCGCCGTATCTTTCGCGCGAAGAAAGTTGAAATGAAGGATTCACCTTCCTTCGCGCGAATCCACCGTTGGATTGCGTTCCATGTTGCGTCCAGATCTACGAGGGAAAGGTTGGTATGCTTTGAGAGCCGTGTGAAGCGCAATCGGACGGGCGATGTCGCGAAAGAAGATCAATGATTCTATCGGACAAAAGATACAGCCCGAACCCACCTGAAGGAACGTGGGGGCAGGCAGGTTTTCTTTCTGGACACGGGGTACTTTTTGTTGTTTGTAAGTTGGACGGTGTGATTAAAAAGATGGACGGTGTGATGGCATAATCGCAACGTCACGTATGGTGTCACCAGATATGTATCAAC | |||||||||
gi|161983660|gb|EL690157.1|EL690157 OPR00186 Elaeis guineensis root Elaeis guineensis cDNA clone 207-H7.seq, mRNA sequence TCGTGCCACGCTGTGTGC EST sequence (targeted fragment marked with yellow): ACACGGCATTCGACTCTAAGTAATGCATACCTCATAACTCAGCTCATATACATCCTCGAGCTACCCCTCCACTATTCTGCTCCCATACTACTAATCCATCTACATCAGCTCCACTATCNTCACCAATAGCAAGCTCCTCCTACTAACTCATTCGGAGAGACTACCATACAGCACTCTCACACACATAACACAAGCAACTCGCTATCAATACATCAGTTATAGTCCTCACTCAGCAACAAGTCACGCACACTAACTAGAGACTAAATACACTACCACGAGATACAACACTCATACATATCTGCCTAGTCTCTACGTCACTGTAGTACTGATTCCCCCAGATGACCACTGGCGCATTACACTTCGTTCGTGCTGCCTCATACGAGGTAGATCATTGTGCAGCCAAGCTGATACGTTAGAATTATAGTTCTCCTATATGAGTGTGGAGGAAGTGGANGTGCGAAATTGACACATTATGTGATGGCNAAGCCATTGTGAGAGTGAATGTAGTCCTGGGGGGGGANTTGTAACATATCGNACTGNATNAGGGATGTCTAGCTCGCGGAGGTGATATGTAGNCCTCGGCGGCATGTGGACTATATTTTTACGAGNACGAGGCTATAATGATGATACTAANTTAGTAGATACGAGCAACGAATGACCAGGTATAGNACAGTGTNTCTGCGAGAAGCGTGGAGTCGAAAGTATGTCACACGTGTAGTCAGGCATCGAGCATGGTAGGAGATCGTAGCAGTTCTGAGGTCTGTGAGCCTGTCATGCTATGGAGNGCTGTGCAATCTAGGTGTGGTCGTACNCGATGTCNGTATGCGATAGAGTCGGATCGACGAGTGGTCAGGGTAGGAAGGTAGTAGGGCAGTAGTAAGACTGANCTGATGTATCAGTAGTAATGCGTGTCAGATGACACCTATATCGGTGAGCGATATATGCTGAGCATCTTGATCTATGATGTATATATGCTCGTACGCTACGTCAGTCCTGTTGCGTCAGTGATAGAGTGGTGCTTGTGCTCANTCGTGTTTATGCGATCTATGTTGGTCATTATAGCTTCGGCTGATCCATGATCCATGCAAAGATACTGTTATCTGTGGGAGATAGATAGATTGGGTAATGTGTACTATGTGTCCGTGACGATTAGTGTCTCGCTGAGAGACTGATAAGTTGAGTGTATGCGTGATGCTGTGAAAGTGTACGATACAGTACTAGCGACGTATAGGATGTTGANGGTCTAGATGCGTGTAGGTTTAGATGCGTGATTGGTGTTGATACGTAGTTGTCTGAGACACAAGTGTCTCCGCGTCGTGCATCTCTAGGTAGATACTGATCTCGTCGAGGTAATGTCGGCGATACGACAAGTGTACGTGCGGAGCGTACAGTCAAGAATATATCATTGATGACTAGGTGCTTTCGAGATGCGTAGCACGATGGCTTCTCTGGTCGTGCGTGTACTGACGTCGGTGAGTGTATCACTTTGATGTAGGTGTGCTCTCAGTCTCATGAGTACTCGTGTTCCGTGCGNCAGGTTANTAGGTCGTCAGTGAGGTCGGTGNGTGCTCTGTCGTCTNCATACCGTTCACGTATCCTGTATGATGATGTTTCTCAAGTCTGAGTTATATCGTCGTGTGCGTGATGGCCTTGCGCGTCAGTCTACTGCGCTAGAGCTGCTATGTATCTATACACACTGTGTGTGCTATAGAGTAGTCATGCTCCTATGCTCGAGCTCTCTGCATTGAGTCGTATTCATGCTAGATGAGTCTATGCGCCCGNCGAGTGCGTCGTCAAGGTGCCTCAGCTGGGTGCTGCAGANTGGCTGATCTGTTACGATCCTGACGTGCGCAGCGAGNGATGTGTGCTCCAATTGGTTATGCATGTGCAAGTGAGTGGTGGAGTGCGAACAGTTCTGGCTGTGTATAATCACTACTGTGTCTCGAACTGGCTGCGTCGAAGCGNCTGTTGATTGGATTCGATTCCGCTTGCGTAGGTACCGTCGCTGGAAGCGTGTACTCCGCTGCGGCGCAATGCTTGTGTTCGCGATCGTGAGCACGTGCAGCGAGGCACGATACTGCGTACGCGTGGCCGCGCGTCTCACCGGCGCGAGGCTGAGACCCTATGTCAGGGATGCGAAGGACACGTGTACCGTGTCGCAGTATCACGCGGCTCCTCTGCTGCGTTGCAGGTAGGTGTCCCGGCTGTGTGCGCGCGCAGGTCCGGTGACCACCGGCTAGGTTTCCGGCATGCTCCGGACGTGACCGATCTGTGTATAGCTCGGTNGTGAGCTGCTCTGGCTGATGCACTGATGACGTGCCTGTACGTCAGCCGATAGTGCTGTGTGTCATCCGATGATCTGGTTCATGCTACGCTCTCTAGCTGCCGTGGAGTGGTGCTTCGCTNCTGTTGATGATCCGCTCGCGTGTTGAGGCTGTCTCTGAGCTGAGCAGGCACTGAGGCGGAGTTCTGTGCTT | |||||||||
gi|161972646|gb|EL688492.1|EL688492 OPSC00247 Elaeis guineensis Suspension cell cultures Elaeis guineensis cDNA clone 177-E6-T3. TCGTGCCACGCTGTGTGC EST sequence (targeted fragment marked with yellow): TCCCACGTCGACTGCCCCGGCCACGCCGACTACGTCAAGAACATGATCACCGGAGCCGCCCAGATGGACGGCGCCATCCTCGTCGTCTCTGGCGCCGACGGCCCCATGCCCCAAACCAAAGAGCACATCCTATTAGCCAAGCAGGTCGGCGTCCCCAACATGGTGGTCTTCCTCAATAAGCAGGACCAGGTTGACGACGAGGAGCTCCTCCAGCTCGTCGAGCTCGAGGTCCGCGAGCTTCTCACGTCCTACGAATTCCCCGGCGACGACGTCCCTATCATCTCCGGCTCCGCCCTCCTCGCTCTCGAGGCCCTCATGGCCAATCCCAGCATCAGCCGTGGTGAGAACCAGTGGGTCGACAAGATCTATGAGCTCATGGATGCTGTTGATAACTACATCCCCATCCCTCAGCGCCAGACCGACCTCCCCTTCCTCCTCGCCATCGAGGACGTCTTCTCCATCACCGGCCGTGGCACCGTCGCCACCGGCCGTATTGAGCGTGGCACGATCAAAATTGGTGACACCGTTGACATCGTCGGCCTTAAGGACACCCGCACCACCATCGTCACGGGGGTCGAGATGTTCCAGAAGACCCTTGACGATGCCATGGCCGGTGACAATGTCGGGCTGCTTCTCAGAGGTATCCAGAAGGCTGACATCCAGCGTGGAATGGTCCTTGCCAAGCCTGGCACCATTACGCCGCACACTAAGTTTGTTGCCATCGTGTATGTGCTCAAGAAGGAGGAGGGCGGCCGGCACTCACCCTTTTTCGCTGGCTACAGGCCACAATTCTACATGCGGACGACAGACGTTACCGGGAAGGTATCGTCCATC | |||||||||
gi|161978238|gb|EL681697.1|EL681697 OPYF00787 Elaeis guineensis young flower 4-6 cm Elaeis guineensis cDNA clone 189-G1-T3.seq, TCGTGCCACGCTGTGTGC EST sequence (targeted fragment marked with yellow): GTAGTGTGTGATGAGATGAGAAGTCCCTCCTCCCATTGGGATGGAAAGCAAACATCAAACAGTTGATGGTTGGCCAAACTCCATCCAATAAACAAATGGGGAAAAAGAAGAAAAGAGAAGGGAGGGTAAAAGGAAAGCCTCTTTTTCGCATATACTTACCGCGATGATGGTGGTGACGACGACGACGACGACATCCCCATTCCCCACATACCCACCTCTCTCTCTCTCTCTCTCTCTCTCTCTTGCTTTGTTCTTCTTCTTGTTTCCAAGAGTTTTCCCAGTGTCATGCTCCCACTTGTGCTTTTCGCCATGGAAGGCCTCGGATTGATGCTCTCCTCCTCCTCTTTCTATGGCCTTGATCGCAAGTAGCGTGGGACGAGGAGGAGGAGGAAGGGAGGAGGGATGGAGAAGAGTTGCGGGTGCTGGGCGGCGGTTGCTCGTGGGATTAGAGGGGCCTGCAGGTCTTCTAAGGCTGCCAAAGACTCGCCCAATGCCCTCCCGAAGAACAGTCTGGTCTATGATGCAGCAACTGAGACAAGATATCTAAATGCTAGCAATCGTGAACTTGCTGCTCGCCATGAATCTAATTTTTCTGTGGAAACTGCTGCAAATCCACCTTCTGAAAACAAAGCATCTTGTCAGTTACTTCAGTTTACTTTTCAGGAGTTGAAGTCTGCTACTGGTAACTTCAGACCTGATAGTATTCTTGGCGAAGGTGGGTTTGGCTATGTTTTCAAGGGATGGATAGAGGAGAATGGCCCAGCTCCTGCAAAACCAGGTACTGGTATTACTG | |||||||||
gi|221144251|gb|GH637746.1|GH637746 EG-S41_010_G03 suspSSHS4, initiation library (embryogenic suspension cells cultivated in med TCGTGCCACGC-TGTGTGC EST sequence (targeted fragment marked with yellow): CATTTCCAGGATGAAGCCTGGACAGAAGGACATATTCTACATTACAGGAACTAGCAAGGAACAATTGGAGAAATCTCCATTCCTTGAGAGGCTTACGAAAAAGGATTACGAGGTTATATTCTTCACTGATCCAGTTGATGAATACTTGATGCAATACCTGATGGACTATGAAGACAAAAAATTCCAGAATGTGTCCAAGGAGGGTCTCAAGCTTGGGAAGGACTCAAAGCTTAAGGAGCTCAAGGAGTCCTTCAAGGAGCTGACCGACTGGTGGAAGAATGCTCTTTCCAGTGAAAATGTTGACTCAGTAAAGATAAGCAACCGTTTGGACAACACCCCTTGTGTGGTGGTGACATCAAAATATGGGTGGAGTGCAAACATGGAGAAGATCATGCAGTCCCAGACTCTTTCTGATGCAAGCAAGCAAGCATACATGCGTGGCAAGAGAGTTCTTGAGATTAACCCCAGGCATCCTATTATCAAAGAACTTCGTGAGAGAGTTGCTCAGGATCCTAAGGATGAAAGCGTGAAGCAGACAGCACAGCTCATATACCAAACAGCCCTCATGGAGAGTGGATTCATCCTCAATGACCCAGAGGAATTTGCATCAAGCATTTACAAATCAGTGCAGAAGAGCCTGGACATCAATCCCGATGCTACTGTCGAAGAGGAGGATGACTCTGAGGAACCTGAGACTGAAGAGAAGGNNNCAACTACCAGGGGAACTGAACCCGATCCTGCTGAGGAGGAGGCAGNNNAATTTTCAGTCNNNNNNNAACTGTACNGCTGTGGCCTCGTNNNNAAAACTAGAACCCNNANNTGTTTTNNNNNTTTNGANNNTCAT | |||||||||
gi|161977454|gb|EL692802.1|EL692802 OPR02843 Elaeis guineensis root Elaeis guineensis cDNA clone OPVRXX_708.seq, mRNA sequence TCGTGCCACGCTGTGTGC EST sequence (targeted fragment marked with yellow): AGGGACCGTCCTGTGCTAGTCGGTCCCCAGGTCTGCAAGAATACGTGCCCATCCGAAACAAACATCCGGGACAGAGAGATTGAGACAGAGGGAGAGCGAGGACGCCGGTCGGATATGGGGCACGTCCGTAAAAAAGTGGCATGTCCTCTTAACACTCAGTGTGACCCTCAATGACGCACTCACCTTGGCCGTCACCCTCATCATCTCCTCCCATATGTAAAGAACAGCCCATACAAGGATACAGTAATAGAACTCGAGGGGCGGGCCGTAGTCAAGTTCGACCTAATGGTCGTCGTATTCCAGTACACTGCGGATCATCTCACAACGCTGCGACGGGGACACGCCCGCTGTCCACGAAGTTAAGCACTCTACGCACAAGCCTCCTACCTCCTAACTGCAGGAACGAGCCCAACGCGACGTCGCCATAGGTCCGTCTCTACGACGCCCAAGACGAAACGAGTTCGAAGACACATAGCACAACATATATCCCGCGCAAAGACAGCGCACAACGTAGCCGACGGCCGACGTCGTCGCAGAACGAACTAGGTCCACATCGTACGTATACGTGTTACACGTAGAAATACGACGCTAGAGGTAGTACGTGGTGCTACGCAGTGGAACGAGTCGCAATACATACTACATGTACGATCGAGTACGAAGGCGAAGCACCAGCTACGAGGGCGAGGTCGACATGCACGCCATCTCCACGAAGAAAGGCAGTCCACACAGCGTGCCACGAACTAAATCCTCGACTCGAGTAGCCGTAGAACTAACGACGCAGTGATACCAGCACGATGTAGTACGCGTAAGAACCCGTCCACCGACGCGTACGGAGCACTAGTTAGACGCTGAGATTCGAAGCAGCCGTACGTACTCGGAACGCATCGTGGATAGTCGCGCGAGCGGTCGCGACCTACACGTACCAGAGGTGCTACTACACACAAGACGACGAGACCGAAATCCCAGCAGAAGACGAAGACGCCAACCTAACACACAGGTTTACACGTGCACCCTAACACGCAAGTCAAACACACCGCGATGCCACGCACCGCACACAAGGTCAACGTACCCGCGC | |||||||||