| mature miRNA: TGCCTGGCTCCCTGTATGCCA species: Elaeis guineensis database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|161971111|gb|EL687817.1|EL687817 OPVM01444 Elaeis guineensis shoot apex Elaeis guineensis cDNA clone OPN0XX_C3-5W.seq, mRNA s TGCCTGGCTCCCTGTATGCCA EST sequence (targeted fragment marked with yellow): CATGNTGGATCATGGGAACTATATCTTCTGTTCAGGTTGCAGATCCGATAAGATGGCCTAATTCACCTTGGAGACTTCTTCAGGTGACATGGGATGAACCAGACTTGTTACAGAATGTGAAACATGTGAGCCCGTGGCTTGTCGAACTGGTTTCTAACTTGCCAGCTATCCATTTANCACCTTTCTCACCACCACGGAAGAAGCTTCGCATCCCACAACACCCTGATTTTCCCATTGAAGGCCAACTTCCAACTCCACTGTTTCCAGGAAACCCCCTTGCGCCCAGCAGCAGCCCCTTGTGCTGCTTTCCAGACAGCACTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAATTTGGTATATCTCTATCAGATCTTCACCTTAACAAACTGCAGTCGGGTCTGTTCCATCCTGGGCTCCACCGGTTTGATCAAGCCACTCCACCCTCTAGAATCTNCACAGGACTTATCATTGGCAACCCTGCCATTCAGGACAATGTATCTTGTCTGCTAACCATTG | |||||||||
gi|193220844|gb|DW247953.1|DW247953 pOP-EON00205_EST_C_1_pSK_SK EON (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EON0020 TGCCTGGCTCCCTGTATGCCA EST sequence (targeted fragment marked with yellow): CACTGGAAATTGTGTCTCAGCCTATGGAGGATTTTCTGTCTTCCTAAGGGAAGAAGAAAATAAGTTGATGAGAAGCAATGGCAATGGTTGTAACTTGGATTCTGGTGGTAATATGAGGGGACGGGGCCGAGTTAGGGCCGATTCCGTTATCGAGGCGGCAACACTCGCAGCTAATGGGCAGCCTTTCGAGGCAATTTACTACCCAAGAGCTGGTACACCAGAGTTCTGCGTGAAAGCTGCAGCGGTGAAGGCAGCGATGAGGATCCAGTGGTGTCCAGGGATGAGATTTAAGATGGCTTTCGAAACTGAGGACTCCTCGAGGATCAGCTGGTTCATGGGAACAATATCCTCTGTTCAGGTTGCAGATCCGATAAGATGGCCTAATTCACCTTGGAGGCTTCTTCAGGTGACATGGGACGAACCAGATCTATTACAGAATGTGAAACGTGTGAGCCCATGGCTGGTAGAACTGGTTTCTAACATGCCAGCTATCCATTTAACACCCTTCTCACCACCGCGGAAGAAGCTTTGCATCCCCCAGCGCCCTGATTTTCCCATTGAAGGCCAACTTCCAACTCCGGCTTTCCCCAGAAACCCCTTTGGGCCCGGGAGCAGCCCCTTGTGCTGCTTCCCAGACAGCACTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAATTTGGTTTATCTCTATCAGATC | |||||||||
gi|193220845|gb|DW247954.1|DW247954 pOP-EON00206_EST_C_1_pSK_SK EON (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EON0020 TGCCTGGCTCCCTGTATGCCA EST sequence (targeted fragment marked with yellow): CACTGGAAATTGTGTCTCAGCCTATGGAGGATTTTCTGTCTTCCTAAGGGAAGAAGAAAATAAGTTGATGAGAAGCAATGGCAATGGTTGTAACTTGGATTCTGGTGGTAATATGAGGGGACGGGGCCGAGTTAGGGCCGATTCCGTTATCGAGGCGGCAACACTCGCAGCTAATGGGCAGCCTTTCGAGGCAATTTACTACCCAAGAGCTGGTACACCAGAGTTCTGCGTGAAAGCTGCAGCGGTGAAGGCAGCGATGAGGATCCAGTGGTGTCCAGGGATGAGATTTAAGATGGCTTTCGAAACTGAGGACTCCTCGAGGATCAGCTGGTTCATGGGAACAATATCCTCTGTTCAGGTTGCAGATCCGATAAGATGGCCTAATTCACCTTGGAGGCTTCTTCAGGTGACATGGGACGAACCAGATCTATTACAGAATGTGAAACGTGTGAGCCCATGGCTGGTAGAACTGGTTTCTAACATGCCAGCTATCCATTTAACACCCTTCTCACCACCGCGGAAGAAGCTTTGCATCCCCCAGCGCCCTGATTTTCCCATTGAAGGCCAACTTCCAACTCCGGCTTTCCCCAGAAACCCCTTTGGGCCCGGGAGCAGCCCCTTGTGCTGCTTCCCAGACAGCACTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAATTTGGTTTATCTCTATCAG | |||||||||
gi|161978317|gb|EL686556.1|EL686556 OPVM00162 Elaeis guineensis shoot apex Elaeis guineensis cDNA clone 83-F09-T3.seq, mRNA sequ TGCCTGGCTCCCTGTATGCCA EST sequence (targeted fragment marked with yellow): TGTTGGCTGAAAAAAATGGGATGGAAGAAGAGGTGAGATGAGTTGTGCCTGGCTCCCTGTATGCCACTGGCTTAGAAACTAATCTATCAATAGATTAGCTACGGCGGGTGGCGTGCGAGGAGCCAAGCATACTCTCGCTCTTTCTCCTCTCTCTCTCTCTCTCTCTCTCACTCTCTCTGAGTTTCTTCTTTTTTTTTTTTTTTATCATGTCATGGGTTTCATGGAATGCTAAAAGATGGGTTAAACTTGATGCTTTTGGTTTTTTTGAGGATAACTAATCTTTGTATGATGTTTTGCAGCTTTAGAAGTGATATGGATTCCACAGCTTATCAAAGCAAAAGAAGAAAAGGTTTTGGCTACAAGAATCTTTCCCCTTGTTGTTCTTCTATTCTGTAGGGGATCTATGTCTCCATGCTTGTGATTTTAGCTTAAGAAAAATGATTATCATTTACTATCTCTGGCTGGTATGTGAATTTCGAGTACAATGACTCGTACATTGAGATATCGTTGTAGAGATGTGAGGTTTGATTGGTGCAATACATCATTGCCTAATATTCTCTTGGT | |||||||||
gi|221145205|gb|GH636166.1|GH636166 EG-S31_003_H07 suspSSHS3, proliferation library (embryogenic suspension cells cultivated in TGCCTGGCTCCCTGTATGCCA EST sequence (targeted fragment marked with yellow): CACCAGAGTTCTGCGTGAAAGCTGCAGCGGTGAAGGCAGCGATGAGGATCCAGTGGTGTCCAGGGATGAGATTTAAGATGGCTTTCGAAACTGAGGACTCCTCGAGGATCAGCTGGTTCATGGGAACAATATCCTCTGTTCAGGTTGCAGATCCGATAAGATGGCCTAATTCACCTTGGAGGCTTCTTCAGGTGACATGGGACGAACCAGATCTATTATAGAATGTGAAACGTGTGAGCCCATGGCTGGTAGAACTGGTTTCTAACATGCCAGCTATCCATTTAACACCCTTCTCACCACCGCGGAAGAAGCTTTGCATCCCCCAGCGCCCTGATTTTCCCATTGAAGGCCAACTTCCAACTCCGGCTTTCCCCAGAAACCCCTTTGGGCCCGGGAGCAGCCCCTTGTGCTGCTTCCCAGACAGCACTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAATTTGGTTTATCTCTATCAGATCTCCGCCTCAACAAACTGCAGCCGGGTCTGTTCCATGCTGGGCTTCACCATCTTGATCAAGCCACTGCACACTCTAGAATCCCTACAGGACTTATCTTTGGCAATCCTGCCATTCATGACAATGTCTCTTGTTTGTTAACCATCGGCAATCCTTCTCAGGGAACAAAGAAAATATGCAATGGAAGGTCACCTCAGTTAGTCCTCTTTGGACAGCCAATACTCACTGAACAGCAGATATCTTTGAGCAATTCTGGGGACACAGTCTCCCCTGGAGTTACTGGAAACAGTTCGTTGGATGGTAATCCTGAAAGGACCACAAACGTATCAGATGGTTCTGGCTCTGCAGTTCATCAAAATGGGCTTGCNNNGAATTCATCATGTGATGGATTTTCATGGTA | |||||||||