miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TGACAGAAGAGAGAGAGCAC
species: Eschscholzia californica
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|67201866|gb|CD481727.2|CD481727 eca01-24ms1-c08 Eca01 Eschscholzia californica cDNA clone eca01-24ms1-c08 5', mRNA sequence 

TGACAGAAGAGAGAGAGCAC
|.||||||||||||. .||
ATTGTCTTCTCTCTTCTGTT

EST sequence (targeted fragment marked with yellow):
GTTTGTAACTGTGTTTCATTGGATCAGTAAAACACCAATCGTTCAATTTTCGTCCTTCCAACTCCTCACTCCCTTTGTCTTCTCTCTTCTGTTAACCATTTCTCTTCGCTCTCCCAACAAAATCGCTCACCCTAGGGTTCCACTACTTCTCAATCTCTTTATCCCATTTTCCCAAAGAGATTGGAAAACCCTCTCTTGTGTCTTGAATTAATATTATTGTTATAGTGTTTCAGATTTCTAAAGTAGGTAAATCTTGTGTTTTTTTCAGCTGTCAGACTAATTATTCCATCTTCATTATGTTCATCCTTGGTTTGGTTCTTCCTGAATGATGAGGAAATTGTATCAGTCAACGCGGGAAGAATCTGGGGTTTTAGTTCCAAAATAGATGGAAATCTGGTGGATTCAATGTGATTCTCAAAGCAGACTTCTCTGAACCCCCATACACTAAAAGGAAGAAGGTCGTTAAAGATAGCGAAAAGTGAAGATCTTCCTTTGAGGAG


gi|31402864|gb|CD481596.1|CD481596 eca01-32ms1-a10 Eca01 Eschscholzia californica cDNA clone eca01-32ms1-a10 5', mRNA sequence 

TGACAGAAGAGAGAGAGCAC
||||||||||||||||||||
ACTGTCTTCTCTCTCTCGTG

EST sequence (targeted fragment marked with yellow):
GGGGATGATTGGTTCATCAACAATGGTGATTCCTAGATGTCAAGTTGAAGGTTGTCATGTGGTTTTGGTTAATGCTAAAGATTACCATAGGAGACATAAGGTTTGTGAGATGCATTCTAAAGCTCCCAAAGTGACTGTTCTTGGTCTTGAACAAAGATTTTGTCAACAGTGTAGTAGGTTTCATATGATATCAGAGTTTGATGATGCAAAGAGGAGTTGTAGAAGGAGATTAGCAGGACATAATGAGAGAAGAAGGAAGAGTTCTAGTGATTCAATCACAAGAAACCCTTCTCAAGAGAGTAGATTGACTGATGACAGTTTCTCATTTTTAACACCACCAACCGGTCGTGCTCTCTCTCTTCTGTCATCAAAATCTACTTGTGTGTCCCAAGCTGATATCTCCAGTCGATCTAGTGCTGCACTTCGAGAACTAATAGCCGAAAATCGTGCAGCAGTTCTTGCCCGTCAACTCTTACATGATCAAAACTGGCACCAACATGGAATAGGCCAAGCAACTCATGATGACTCTCAAGTTGAACTCCTCACCCAAGTTCCAGTACTTCAACACCAATTCCCTGAGTCGTCTGAGTGGGATCGGTTCCAAGAGTCTAATGCACATGTAACATTGGATCTCATGCAGACACCAAGTCGCCTTTTGGGTTCATACCGGGTAGGTCAAATCAAAGGAAGA


gi|31397981|gb|CD476713.1|CD476713 eca01-25ms1-g01 Eca01 Eschscholzia californica cDNA clone eca01-25ms1-g01 5', mRNA sequence 

TGACAGAAGAGAGAGAGCAC
||| ||||||||.|||| |
ACTCTCTTCTCTTTCTCATC

EST sequence (targeted fragment marked with yellow):
GGAGAAATCTTTCTCTACTCTTTCTCTTCTCTCAAAGGTTCTTGCAATCTACAAGGAAGTCGTGGCTGAATTGAAGGCAGCTGGTGCCACTTCAATTCAATTTGATGAACCTACACTTGTGATGGATCTTGAAGGTCACCAACTTCAAGCAGTTACTGATGCCTACTCTGAGCTTGAATCTACTCTATCTGGGCTTAATGGTATTGGGGAAACCTACTTCGCTGATGTTCCTGC