| mature miRNA: AGCCAAGGATGACTTGCC species: Eucalyptus globulus database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|162322468|gb|ES588429.1|ES588429 000001480052_D10.ab1 Eucalyptus globulus under low temperature Eucalyptus globulus cDNA, mRN AGCCAAGGATGACTTGCC EST sequence (targeted fragment marked with yellow): CTAGTAATCACACTTAAAAAAAATTCTCTCTGTTTCGCCGAAAAACGCTATCTTTTTCCTCTTCTCTTTTGTTGAGCTACCGGTCCTGCCTATACCCACTTCTCCATTGACTCGGTCTGTCTCTGGCCGTTCGTCAATCGGGGCATTTCAGGGCGTGCTGAAATTGAATGTCTTAAAGGAGTGACAATGCGGGTTTACAAAGAAGCTCCTAGCATTGGCCTTCTGCTATTCCTCCTCATCAGCCTTTGTTCTGTATGGCAATATGTTGCTTCTGATGTCCAGGCGAATCAGAATGTACAGCTGCATGTTAATGCTTCCACGGGTCGGCTGATACCTGAAACGCTTTTCGGTATATTCTTTGAGGAGATCAACCATGCTGGGGCTGGAGGATTGTGGGCAGAGCTTGTAAGCAACAGAGGATTTGAAGCTGGGGGCCCTAACATACCCTCAAACATTGACCCCTGGTCAATAATTGGGGAGGAGTCATCTTTGGTTGTTTCAACTGACCGGTCATCATGCTTTGAACGTAATAAAATTGCGCTTAAGATGGATGTGCTTTGTGACAGCCAAGGTGATAACATGTGTCCAGCTGGTGGTGTCGGTGTGTATAACCCAGGATTCTGGGGGATGAATATAGAGGAAGGGAAGACGTACAAAGTGGTCCTTTATGTTCGCTCATCAGGATCAATTAATGTATCTGTATCTTTGACGAGCTCAAGTGGGACACCAACTCTGGCTGCTGCAAACATAATAGCT | |||||||||
gi|224179706|gb|GO248223.1|GO248223 EgTS_6E6 Eucalyptus globulus C14 clone shoot apex under hydric stress Eucalyptus globulus cD AGCCAAGGATGACTTGCC EST sequence (targeted fragment marked with yellow): ACAAAATCGATGTATGCAGGTCATCCTTGACAGAAATTCAACTGGATGTGCTTGCACAGTTGGAGGACCTTCGCCAATTGCATATATTGGAGTGTCAATTCCTTGAGAGACTGTCTCACATGCAAAGCTTAAGAAAGCTATGGTTTTTGGGGTTTACTAATTGCCCACGGCTGATTGAGGTTCAAGGTCTCGAATATTCAGAATCAGTGGAGCATATACTTATTAGTTCCTGCCCATCTTTAAAAGAGCTACCTGATCTTTCCAGCTTACAAAACTTGGAAACACTGCATATATCTCACTGCGACTCGTTGGAAAGTTTGCCTGTTTTAGCGAATATGGAAACATGTCGTATTACTGTTGTCTCATGCAGGATGTTGCCTCGCGTTATATGTCCCTTTTCAGCTTTTGGATCAGGAAGGTTATGATGGGCAGCTTCCAATCCGCAATCAGAAGTGGCGGCATTTGAATGCCTTGCTCAGATTGGTCATCATCCTTTCTACGTATATCTATATGTTGTGTGT | |||||||||
gi|162326295|gb|ES596483.1|ES596483 000001604352_D22.ab1 Eucalyptus globulus under low temperature Eucalyptus globulus cDNA, mRN AGCCAAGGATGA-CTTGCC EST sequence (targeted fragment marked with yellow): AGGCCCAAGTAAAAATATAAACGTCACCAAAATCCATACGAGTCTAGTAAAAGCAAAATTTAAGGCAAACTAAAATGTCTCCTCAGAGTTACTAAGACTAAATGACTTTTAGAATGAGCAAACCCCCCGACAAAACCTAAAATCCGAGGCCCTTCAAATAAAGACATGTATGAGACACTTAAAATGATCAGAGCTCCGCAATCCTGCAATCCACAGCAGCCTCACTTCTTCTTGGCAGCGGACTTTGTGACCTTGGCACCGGATGGGTCCTTCTTCTCCACACTCTTGATGACACCGACGGCCACGGTCTGACGCATGTCCCTGACAGCAAAACGACCAAGAGGAGGGTACTCCGAGAAAGTCTCGACGACCATAGGCTTGGTGGGGATCATCTTCACCATTCCAGCATCACCGTTCTTCAAGAACTTGGGCTCCTTCTCAATCTCCTTACCAGACCGTCTGTCAATCTTGGTCAGGCAACTCAGAAAACTTCACAGCAATGTGGGAAGTGTGACAATCAGGGACAGGAGCATAGCCGTTGCCAATCTGCCCGGGGTGGTTCATGATGATGACCTGGGAAGCGAATCTATCATCTTTACTGGCAGGATCATCCTTGGCATTTGGAAGCCACAAAACCCCCCCTTGAGATTCTTCCCGGCAACGTTCTTGACATTGAACCCGACATTTGTCACAAGGGGGGGCCTCCTGGGAGAGCCTCCGGGGTGCTC | |||||||||
gi|162327402|gb|ES588994.1|ES588994 000001480252_D05.ab1 Eucalyptus globulus under low temperature Eucalyptus globulus cDNA, mRN AGCCAAGGATGACTTGCC EST sequence (targeted fragment marked with yellow): GGGACCTTTAGACAAGTTTCGGTCCGGATTCCCGGGATCTCATCCTTGGTTTCATCATCGTTCCTGAGGAGTCTTCTTCTTCTCCTTCGTCTTCTTCTTCTTCTTCATTGCTGGCCTCAGCCTCGTCTTCTGCGGTTGAGAATTGGACCGGTCTTTTTTGTTGTCGGTGAGTTCTTCGTTCTCCTCTTTCGCATTCGCAGAAGCTTAAGATAATGGAGGGGTTATGTAACGCCGCCCTCCCTCGCCAACTGTCGTCAATACCCTTCACTCTTAGCCCTGCAAAATCGCTTCTTGCTCTACCCTTCTCGAATTTGAACTTGAATTCGAGAAGTGGGTTTCTCCACCCGAAACCCGAGACGGGTCCTTCGTCAAGAAACTGCTCGTGCTTGAGTGTGAGCAGGAGAGATGATGAGGATGGTACTGCCACCTCCATTGATGTTAAAGATGACTGGGAAGTGGAGTTTCTTGGGGAGATTGACCCTCTGGGCTTTCAAGCCCCTAAAAAGAGGAAGAAACGGGCCAAGTCTAAGCTGCTGCGGGACACTGATACTATGGAGTGGTGTGTGAGGGCTAGAAAGATTGCTCTCAAGGGGATTGAGGCTCGGGGGCTTTCTAGTACTATGGAAGATTTGGTTTCCGTTAAGAAGAAGAAGCAGAAGAAGAAGAGAAACAGCGGTAAGAAGCTCAAGAACAAGTCGAAAACCGATAAAGAGGATAAAGAGGACGTGATTGACAGCGATGAAGAATGGGACGTGGATGTGGATGAGGATGTGGAATTGGAAGACATCGAGGAATTGGGGATCGA | |||||||||
gi|162326990|gb|ES590948.1|ES590948 000001601752_E15.ab1 Eucalyptus globulus under low temperature Eucalyptus globulus cDNA, mRN AGCCAAGGATGACTTGCC EST sequence (targeted fragment marked with yellow): TTCTGCAAGAACCCTCGGTCTCTCTGTCTCTTTGTCTCTCTGTCTCTCTCTGTCACGTGCGGAGAGGCGTGCGTCATCCTTGGCTTCGCTTCGCTCGGCACGATGGGAAGAGACGGCCATCCTCTGTTGAGCAGATTGGGGAGAGAGGCCGGCTTCAGCCATGGCTTCTCCGCCGACCAAATCCAGTCGCTCGCCGCCATGTGCGAGACCCTCCTGCCTCCCCTCTCGCCGGACAGCATCGACGAGGACGGCCCTCGCAATGAGGCCGTGTACTCCTTCTTCCGGGCTTCTGGGTCTCAGCATCCGATCCCTGATGAGATTGCAGAGCGTCTGGCGAAGAGGGGTCAGCGCAGTGCACTGCTTGTTGTGAGCCTTGTCTTGAAGATTCTCTCCTACAGATTGGGGACCTTATTGCTCTGTGGGTTTCTATGCTTGGACTGGAGATGGCCCTTCATTCGCAAGTTCCACGAGATGCCATTGGAGAGGAGGGAGATAGTCCTCAACAGGTGGTCAAGGCAGAAGAAACTGATCCCTCTGAAAGTTGCCTTCGCGATGGTCAAATTGTTCTGCTTGTTCCACTTCTTCTCAAGGACGGATGAGAACTCCAAGAACCCGTCATGGGAAGCGATTGGATACGAGGTTGACACTCGAGAGAAGCCAGTGAAATCCAAGAGGGAGAGGCCTCTAGAAAAGGGAACTATCGAGACCATGTACGAAAGCGGCTCATCCCTTGTCCAGTCTCTGACAGGGAAAAGCCTCAAAGTCTCGGAATGT | |||||||||