| mature miRNA: TGCCAAAGGAGAGTTGCCC species: Eucalyptus globulus database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|162328037|gb|ES593731.1|ES593731 000001602752_F13.ab1 Eucalyptus globulus under low temperature Eucalyptus globulus cDNA, mRN TGCCAAAGGAGAGTTGCCC EST sequence (targeted fragment marked with yellow): GCACCTTAGGAACAAGTTTTCGGTCCGGGATTCCCGGGATGGACAAAGAGCTCAAACTTCACCCACAGATAGATTGCTATTGCAGTGGGACAACTGCAGTCACCTTGGTCAAACAGGGTCATGATCTTCTGATTGGAAATGTTGGCGATTCGAGAGCTGTGTTGGGTACCAGGGACAAAAATAACTCTCTTATTGCTGTCCAGTTGACTGTAGACCTCAAACCGGATCTTCCAAGAGAATTAGAGAGAATCAGGCTGTGTAGAGGGAGAGTTTTTGCTCTAAAGAATGAACCTGAGGTTGCACGAGTATGGCTTCCCAACTGTGACTCTCCTGGCCTTGCCATGGCTCGAGCATTCGGAGACTTCTGCCTTAAAGACTTTGGTTTGATTTCCATACCGGAGATTTCTTATCGATGCCTCACTGATAGGGATGAATTTGTAGTGTTGGCCACTGATGGGATTTGGGATGTCCTCTCAAACAACGAAGTTGTAGACATAGTGGCCTCAGCACCGAGGTCAAGTGCTGCAAGAACCTTAGTTGAGTCAGCCATTCGAGCTTGGAGGCTCAAGTATCCATATGCCAAGGTTGACGACTGTGCTGTGGTTTGCCTCTTCCTCGATTCAAATTCGAGCAGTCATGCTACTTCCCCATCCGCATCCAATGAGCAAATAGTATCTCCTCAAAAGAAACCCTTGAAAGCGGTAATGCCCTGTGGTGAGTAGGCCTTCAAATTTTTGAATAAAAAAATACTTGGGGGTTTCCACATCATCTTAAGGGCTGCCCTTCTTTGGTAGGGGCTCTTTGTTATG | |||||||||
gi|162320566|gb|ES596201.1|ES596201 000001603852_D05.ab1 Eucalyptus globulus under low temperature Eucalyptus globulus cDNA, mRN TGCCAAAGGAGAGTTGCCC EST sequence (targeted fragment marked with yellow): GTGAACTTGGATTTGATAAAAGTGGAAGGAAAAGTGGGAGGGAAGCTTGAAGACACGGAGCTCATATATGGAATTACTTTGGACAAGGACATGAGCCACCCGCAGATGCCCAAGAGAATTGAAGATGCAAAGATTGCTATCCTGACGTGTCCATTTGAGCCACCTAAGCCGAAGACGAAACATAAGGTGGACATCGATACAGTTGAAAAGTTTCAGACTTTACGTGTGCAAGAGCAGAAGTATTTCGATGACATGGTTCAAAAGTGCAAGGATGTGGGTGCAACCTTGGTCATCTGTCAGTGGGGATTTGATGATGAAGCAAATCACCTTTTAATGCATAGGAACTTACCTGCTGTCCGCTGGGTTGGAGGTGTGGAGTTAGAGCTCATAGCCATAGCCACAGGCGGAAGAATTGTGCCAAGATTCCAAGAGTTGACTCCAGAGAAGCTGGGAAAGGCTGGACTGGTGCGAGAAAAATCATTTGGTACTACAAAGGATCGGATGCTGTACATTGAGCATTGTGCAAATTCAAGGGCTGTTACCGTTTTCATTCGAGGAGGTAACAAGATGATGATAGAGGAGACTAAGCGCAGCATCCATGATGCACTTTGTGTGGCCAGGAATCTCATAACGCAATAATTCTATTGTGTATGGTGGTGGTTCAGCTGAAATCTCATGCTCAATTGCCGTTGAGGGCGCTGCAGAAAAATATCCTGGCCTTCAACAGTAGGCAACCAAAGGATTCCCGGGATCCCTGGGATGCATTTCCCCTGGCCCTTACCCAAAAAAAGTGGGTCTAAACCCCATTTGGAACATTTTCTTGGTGGTTTAAATCTCCACAAAATTAAGGGAAAAAAAAACTCCTTTCTTGGGGGAATCTCTTTTGGCAATGAGC | |||||||||
gi|162328014|gb|ES592714.1|ES592714 000001602352_M22.ab1 Eucalyptus globulus under low temperature Eucalyptus globulus cDNA, mRN TGCCAAAGGAGAGTTGCCC EST sequence (targeted fragment marked with yellow): TGAGGAACAGGTTTCGGTCCGGATTCCCGGGATACTCCTTCCTCCTCCGGCAACCATGGAGTCGCGAGTGCTGTCGCGCGCCGCCGCCGCCGCCGCCCTCCCCGCCCTCCCCCGCCTCGGGCGGCTCCCGCGGGAGGGCCCCTGCTGCGTCGCCGCCCCCGCGAAGCCGGTCGTCGGCTGGGAGGGTGGGAACCTGATCTGGGGGAGGCAGCTCCCGCCGGTGCTGCTGCTGCTCGAGGGCTCTTTCGGGGCGGCTAGGAGGGAGACCCTCCTTTGGCTGTGCTCCGCCGCCGCCTCCTCGTCGCCGGCCGAGGGAGGCGATTCTCTCCGGTGAGGCTAAGATCGTGCCGGGTCTGTTTCTTCCAAAAGTTACCTGGTGCTCTTCGTCGGATTCTTTTCTCTTCATGTGTTACTTTTTTCCCCTGATATTTCCCACTCCCGAACTAGCAGAATCGCCACTACTACTCCTCGTTCATTACTTTATTGCGTGTCTTGGCGTTTCGTTGTTCGGGTTGGTGACTCTGTTCGGCTGAGCTTTGTTCGTGGGCCTCTCCTTTGTCTAGGTGCTGATTTTTTGTATATTGAGGTTAAGTCCAATTTTTATCTGTGGTCATCTTTGAATCTGGTATTTGATTTCTTTATCTTCTTAATGATTCTTCGTTTCGATTTTTGCATTTTTTTTTTTTCATCTCTTCGATTTCTAGCTCTTTGTTTAGTGATTCCATTGATCTGTTTCCATTTCATATTCAATTAATATACTGACATACTCTCTCCTTATTGTGTCTTGTTTTT | |||||||||
gi|162328456|gb|ES590104.1|ES590104 000001601152_I02.ab1 Eucalyptus globulus under low temperature Eucalyptus globulus cDNA, mRN TGCCAAAGGAGAGTTGCCC EST sequence (targeted fragment marked with yellow): TGGCATTAGACAGTTTCGGTCCGGAATTCCGGGATGGCAACGAAAAAAAAAGGTCGAAGTCAAAGATTTTGAATGGCCGATGAATATAGGTGAGAGTACACACTGAGCAAACCAGTTTTAGGGCTTCTCTACTTTGGCAACACATGTCAATGATGACGACGACGGAGAAGTCGAACGGATGCCGTCCAGTCATCGACGACTTGCCAAAGGAGAGTTGCCCTTTGACTGCTTCTGCTTAACGCGATTCGAACTCGAAGGGTCTTCGAGCTTTTCGTTCGTACATGGTGAGTTTCTGCATTGATGTACGACGTGTGCTGATATGTCGAGCTTTGTTCTCTGCTTGGGTTGAAACCGCATGAAATATCGACGTGACATCCTCCAGCCACATCTCTGCATTCTCAATGCATGAGTGACAATAGTAATAGTAAACACGAGTATAAAGTATGGATGAATTGAATTCGGACATTGAGTAAGCACGCTACATCTCTTTGTGAAGATGTAGTAGAATGACATCGATGTATGGTGCCTGCCTAATCACCAACTTAGCGATGACCATCTTTTTAACTCGACATACCGAGAATTAGTTGGAAAAATCTGTAGATTTGGCTTGTGGATCTGTAAATCCCCTTAGAGAGAGGGATCTATACTTTGAATCGGGCTGATACCACTTCTAATTTTTGCGATAAGGTATTCGGATGATAACTATCTCGCGTCCTTTCAAATGTAATGATCTTTATGCAATATGAATTATTTTGAG | |||||||||