miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: GAGGAAGGCTGAGCAGGATTT
species: Eucalyptus gunnii
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|103481343|gb|CT987538.1|CT987538 CT987538 Eucalyptus gunnii differentiating xylem AFOCEL clone 832 Eucalyptus gunnii cDNA, mR

GAGGAAGGCTGAGCAGGATTT
||||||.|||| | ||||.||
CTCCTTTCGACGCCTCCTGAA

EST sequence (targeted fragment marked with yellow):
CGGCATTTACATTGCCGCCTACTAAAATTCCTAACCGATAAAAGCCTCGACAACAAGGTTTTCAATTTCCTAGCACCAGCTCCTGGTCGAAGGATGCCGTAGTCCAAGCTCTGCAGATTCGAGCAAGTCCTCCGCAGCTTTCCTCCATTCGTCGTCCCAGAGCACCAACCTCCGAAAGCGAACTCACCTCGCCGTTTCTTGAGCAGCTCACGGTCTATCCTGTTGAGGACAGGGTCGTCCTTCTTGAACTTCCTGGCGAAGGGCCGGTTGCTGAGGACCATCTTCCGGTAATCTCTGAGGCCGAGCGACCGAGGATGCTGCTTCGGAGGAGTGTCCCAGGTGATGTAGTGGAGGTCGTGGTTGGCGGTGGTGTTCTTGTAGTCCTCAGAGTTGCAGACAAGGGTTTGGAAGTAGCCCTCAGGGGAGGAGACGAAGTTGGCATAATAAAGGAGGAGGGTCCTAGGCAGGTTTTCCCAGCCAGCGATGCAGTACTCGGAGAAAGACCGGGATAGTACCATCCAAGCAGAACCTGTTTTCTCAAAGGCAAGGCAATGTCGACATATCAGACAACAGAAGTAACTTGAAATACGTAGACTGTAAGGCAAAACAAGACTGCTCGTACACACGAGTGCTGATAAAGAATGCAATTCAACTTTTTAAGATATAAAAAAAAATTAAAAAAAAAAAAA