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mature miRNA: TGTGTTTTCAGGTCACCCCT
species: Eucalyptus gunnii
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|167024409|gb|CU404432.1|CU404432 CU404432 LG0ABA Eucalyptus gunnii cDNA, mRNA sequence

TGTGTTTTCAGGTCACCCCT
| |||||||||.|||||||
AGACAAAAGTCTAGTGGGGC

EST sequence (targeted fragment marked with yellow):
CGGCCGGGGTGATCTGAAAACAGATGCTGTTTTCTCGATCGATGATGACATTATATTTCCTTGTTCATCAGTGGAGTTTGCTTTTGATGTTTGGAGAAGCGCACCAGATACAATGGTTGGATTCGTGCCTCGAATTCATAGGATTGATCAGGAAGGTAGTGTCAATCGCTATGTCTATAGTGGATGGTGGTCTGTATGGTGGATGGGTAGATACAGTATGGTGCTCTCAAAGGCAGCATTTTTTCACAAGAAATATCTGGATATATATACAAACCAGATGCCAGCATCAATTAGAGATTATGTTACGAGAAACAGGAACTGTGAAGACATTGCAATGTCATTCCTTGTGGCAAATGTTACTGGTGCTCCTCCTATATGGGTTAAAGGAAAGATATTTGAGATTGGTTCCACAGGAATTAGTAGTGTGGGAGGTCACAGTGAGAAGAGAAGTCAGTGTGTCAACAGGTTTGTGACAGACTTCAGGCGAATGCCCTTAGTATCAACTACTGTGAAGGCTGTTGGACAGCAGGAATAT