| mature miRNA: AATATACTCCCTCCGTCCCAT species: Festuca arundinacea database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|257184806|gb|GT048775.1|GT048775 CLS_cLiFproots_74a2_1_m18cLibkit5LD_G09 CLS_cLiFproots_plant Festuca arundinacea cDNA clone AATATACTCCCTCCGTCCCAT EST sequence (targeted fragment marked with yellow): TATTGGAGATGAGTAACTCCTCCTGGAAGTAGGTGTGACACAACCCCTAGGATGTGTCCCGCCTCGCTCGCCTTAGTGAGCATTGCCGCCAGCCCATCCACCATAAAATCAAAGAGGATAGGTGACAATGGATCCCCCTGCCGGACACCCCTAGCATTCCGGAAGTAGGGTCCAATCTCACCATTGATATTTATCGCAGTCTGGCCACCCGAGAACAGCTGCATCAGCCTATGGACCATTATAGCCAAAAAACCTTTCCGGTGCAGGATCTCCCTAAGGAAGTCCCAGTTGACTCTGTCATAGGCCTTCTCAACGTCCAGCTTGAGTAAGAGCCCCCCTAGCCTCCTCGCTCGTAATTCATGCGCAATTTCAAGAATAGCCAGCACCCCCTAAGTTATGGATATAACCATAACCTGCCTATTTATACTAACATGCGAGATTCAACCTATGATTCCCGTCAATTGTCATTTTATCATGAGACCCGTCGATCTACTACGTAGTATTGATGACTTATGAGTTCTAAGTATGAGATTATGATTTCTAAATTTTGATAATTTTCACGTGCTCAACTACATGCTATTGAGTTGAGATAGTTGATTGTTTTGTTAAACGTTCTACCGATAAATGTAGAAGCGAATAACTTGTACTCCCTCTAGATTTTCCAAAACTTAGATGTATCTAGACACTAAAAGTACGTCGATACATTCGAATTTTAACAAATCTCAGACATGTTTCATGCGACGGAGGGAGTATATAAATTGATCTACCCATTGTTACACAATGGATGCAGGTACACGAGTGTGAATAAAGTTTCATATCCCTGAGTAACGGATATGGGTACAATTCTTATCCACTTACTGTACAGTATATGTATGGTATTATTTTACCCACTTATACCTACCCATTGCCATCTTACTCGCGTATCCTTCCCACTATTAACTTTATTAGCTCACAAAGATTGAAGATTGAAGTAGAGGCCTGTTTGAATTTTTGGTACACGAGAATAACAAATCGAAGAAATTCAGTGCACAACACACAGAAAATTGACCGCGTTTGGCTTC | |||||||||
gi|74451294|gb|DT707469.1|DT707469 s13dFA12G05ST036_112032 Tall fescue, Festuca arundinacea Schreb, stems Festuca arundinacea cD AATATACTCCCTCCGTCCCAT EST sequence (targeted fragment marked with yellow): GGCACGAGGCAGGTGGCGAAGGAGTTTGGGTCGTTCAGCGGGTACATCTGGGGCCACATGAACCACCGGCCGATGGTGGGCAAGTACAGGCACCACAAGTACATCCCGCTCCGCACGCCCAAATCGGAGGCCGTGAGCAAGGACCTCATCCGGCGGGGATTCCGGCTCGTCGGCCCCGTCATCGTCTACAACTTCATGCAGGCCTCCGGCATGGTCATCGACCACCTCGTCGGCTGCTTCCGGTTCTCCGAGTGTATCCGCCTCGCCGAGCGCTCCTGGGGAATCACCAACGTCGCCACGTAGCCCACTAGCCGAGCCCGACTATGCCAACCTCATGCTCGGCATCCCAATGTTTCCCTTACAAGTTTTCTTCTCCCCAGGATGCACAAGAGAGTTGCGTAGTACAACCTGTGTGTTATTTATACCTTTTTTTGGATTTAGTAATACTCCCTCCGTCCCACGAAAATTGTCTGAAATTTGTGTAAATTCGGATGTATCTAGACACTAAATAGCATCTAGATACATCCAAATTTGGACAAACCTCAGACAATTTCCATAGGACAGAGGGAGTATATAACTGGG | |||||||||
gi|74438744|gb|DT694919.1|DT694919 s13dFA56H05HS048_440982 Tall fescue, Festuca arundinacea Schreb, Heat-stressed shoots Festuca AATATACTCCCTCCGTCCCAT EST sequence (targeted fragment marked with yellow): GGCACGAGGAGACGACGGAAGGAAGATGAGGATGTGACGGGATTTGGTTCCATTGCTCAGAGCAGTTATTAAGGGCAGTTTTGGAAAGTATTCATCACACCTGACCCACCTTAATAACTGTGCCCAGAAATTTACGCCCTAAGCTGTGAGACGGAGGGAGTATATTTATATTCAGTCTGCTTTATGTAGTGCATTTAATTATGCATGTTGGTTTATGGTAATGTGATATCAGCTAGCCAATCTTCCGGTGTTTCCTTATCGATCTGTAAATCTTACTTGCTATTAAATTCTATATATACTTACGTCTAGAATCTGTTCATTCTATTAGAACTTAGCATGTTCTGGCATTGATTTTGGTAGAGGCATGAAACATCTGTAACCAATACCGATCCTGTTGTATTTCAGGTGGACATGAGCTTAGCAAGAGCACTGGAAACGCGGGTGCACGTGTTGCTTGCGGGATCATTGGGCTCCAGGGCTAGAGGCTGTCTTCAATGGCCAACGTCGTACAGATCTGGACAATACAGACCTGCATTAGCTATTTTAAATAAGCACCTGATCAATGATTGCGGATTAGTGTGCATCATTCGCGTCCTCTCATATGTGCCATCTGA | |||||||||
gi|257188518|gb|GT051227.1|GT051227 CLS_cLiFproots_8a1_1_m03cLibkit5LD_G02 CLS_cLiFproots_plant Festuca arundinacea cDNA clone 8 AATATACTCCCTCCGTCCCAT EST sequence (targeted fragment marked with yellow): ACACAAGGTATTCGCATGAAGTAGCATGCCATCCAATGAGGTATCAAATGTATACGTGGAAAGGAGCGAATTGACCTCTTGGTGTATGGCTTTGGCCCGAGCTTGTGTCATTGGGCCATGAGGAGGGCTTGTCGGTCTTGAGGAGGAGGTGTCCAAAAGCCACCCCGTATCACCTTCTTTTATTCTGAATTAACTGCCCTTTCTATTGAGCTCCTCTAAAACCGGTGTGTGATTGGCTGTGGAGATTAACAAGGAGACTCTTGCGGGTGCAGAGGCAATGCAGAGGAAATAAAGGAGGCAGTTACTAGCGATTTATGAGGGGCACACAAGGAAACAATATGCATGCACCGCTCTCCTTAATAACCGTGCTCAGAAATTAACGCCTTAAGCGTTGGGTCGGAGGGAGTATGTATCTAGACGCGTTTTAGTGTGTATAGCATATTAAACCGGCCAAAACCCAATATGCATTAGCAATGCACCACACTGACCCCAAGGCCACGCTAACTCTGACACCAAAGCAACTAGATCTGACACCCTAGAACACCACAAAGATTTCTGGCCCTGCCACTGTGACATCTATATCGGCCCAAAGGCCACGGCCTAGCCGAGGCAACACCTTTGTCATCCGAACGATCAAAGCAGATCTAAAGCATACCATGGCCCTATGACAGTATGACCATTCAAAAATTAAATATCTCATGGTGATTCCCGAAGCCACCGCTCCGACTTACAACACAAATAACGCATACATGTCTGCTCTGAGGTCGCATGCCGAATCGGGCGACGACACCATCACTCAAGTGATCGAAGCAGACACCCCACACATGACAACGGTTGATAACCCCCAATTGCTCAAGTCCTTCTTTCTCAAATCCCATAAAAAAAAAAAAAAAAAA | |||||||||
gi|257180078|gb|GT045580.1|GT045580 CLS_cLiFproots_60a1_1_a15cLibkit5LD_A08 CLS_cLiFproots_plant Festuca arundinacea cDNA clone AATATACTCCCTCCGTCCCAT EST sequence (targeted fragment marked with yellow): AACCTCTCCCTGAAGTGACAAAAGGCCAAAGTGAGTCATATTCCAATTTGGGGTTATTGTTTCAGTACCTGAGGTGGATTCTTATGCTCTACAGTAGTACAGTCAAATGATTCTGGTTCAGGTTTAATCAACTCCTTTGATATACTTCAGAAATAGACGAGATTTTGGCTATTGGTCTCATGCTATGATTTGCACTTGGTTCTACTGGTTTCTCTTTCGCCAGGAGACGATTCTTTTCGGTCCAGGGTCGCTTCATGCTTGTGCTTGCTGGTCACCTGGTCTGTCTGATGAGTATGAAACAGCGGAGGTGATGCTGATCCCTAGAGCCCTATTATGTTTTCGAATTTCTTTCCGAGCTTACTTTGGATGCCACAGAACACAGATCAGGAATCATGCCATGTTGTGAAGAGCATTTTGCTGCTGGACGCTGAGGGGGAACTGTGTTTCCATGAAGTTCTTCTCCGTTAGCTACTTGAATAATGCATCCTTCTACAGGAGTTCGATGCCACTGGAAACCAGTGACCTGCTCCAAAGTAAAGCATTTCCAACCTGCACCCCATGGATCTTCACAAAATACTACCAGTCACCTAAACATCCAAGCAAGTGATTTTTTGGTCCAGCAATATTGAATATAGGCTGAGCTTATAGATCAATATGTGGACACGTGTTTCTGTTGTGGTGGTGCTCAATGACATGGACCTCAGCGCGATTCTGAGATGCACCTGGCATGGGGAAATAGGCACCGTTGTGTCAGCTAATTGTCCTCTCGTTTAGCTTTCATTCCGTTTGTAGTTCTACACAGGAGGATTCAAGTAGGAAGCCATGTAAATCATAGCTTTCTACCTTCAGTGATGACAGTTGGGTTACTTTCAAGGCCGGTGACAGATCACGTGTCAAAACTTTGATCTGCTGCTTTAATGCCAATGGAGGACCCCAGAGAATCCCCTTTCGAGCAACCACTTGGTGAAAGATACAGAGCAGTGTGCTAGCTAGCTCTCATTCGGTTTGCATTATGGATCGGAGGGAGTATAATATTTTGGCCTTGCATATAGTTCTTCTCAGCTAACATCAAACTTCATGAACAGATAACGAGCAGTATGCTAGCTCTCATTTTGGTAAAAAATTTAACATATTTTTTACGGTCCAAAAAAAAAAAAA | |||||||||
gi|257182483|gb|GT044564.1|GT044564 CLS_cLiFproots_55a4_1_l12cLibkit5LD_F06 CLS_cLiFproots_plant Festuca arundinacea cDNA clone AATATACTCCCTCCGTCCCAT EST sequence (targeted fragment marked with yellow): AATGTCCATTCAATATTGTAGATGTAAATATATTTTTCTAAATATTTGGTCAAAGTTTGTAATGTTTGACTTTTGACCAATCCTTAGACGCCTTACATTTTGGGACGGAGGGAGTATAATATTGGCAAAAATGGGAACCATCACATTGATCGGCTTACTGTTTTGACCTTTGTTTGGATTTTGTGCATGATGCAGAGCTTGTCTTCCATGAGGTCAAGCCTATTCTCAGATCTGCATAGCATCTGCATACTCGCCTTTTGCCACACTGGACATGAAAGTCCTATGGAATGGAAGGAACAATATGTGATGTTGATCTTGTGATTACTGTTGCTGGTGATGTCACACTTGCATGGGCTAGCCATTTGTTGGATAACTTGATTCCCATTGGTGTGGTGCGGTTTTCAAAGTTTCAGTCCTGAGGAATTCGTACCAGTAATATTGCAGTCTGTGGTCCGGAGCAAAGGTTGAATGGAGTGCTGAGGACTTTTGGAGGGTGGCCAGTAGGATGAGTTGGATCTGTTCTTCGTACCAAAGGGGGTGATGCCGTTGCAGACAGGTACCTGAAATATACATTGACCCCAGTAATGCTGAAATATTTTGGGTCAGTGGAATGCATGAATGCAAGTTTTGGGATAAATGACAAGGTTCTTTTGGAGCTTCAGGAGCGAGCAACCAAATTGAAGGCAATAGACCTTAATGATTCAAATTTCATCCCATTGTGCACTTGGCCAGATTTGAGAATGATAGGACTGTATCATTCATACTTTCTATGGAGTTTTTTGATCTAAAATAATGGCATACGTGC | |||||||||