miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: ATTAGTATTCCCTCCGTCCAT
species: Festuca arundinacea
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|74450260|gb|DT706435.1|DT706435 s13dFA03C06ST038_100022 Tall fescue, Festuca arundinacea Schreb, stems Festuca arundinacea cD

ATTAGTATTCCCTCCGTCCAT
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TAATCATGAGGGAGGCAGGTA

EST sequence (targeted fragment marked with yellow):
GCACGAGGAATTATATATGGACGGAGGGAGTACTAATTTTGTGGACATATTATATAAGTACAAATCATAGTCAACGTTGTAAGTCATTGAGCAGTGAAAATCAAGGGCGCCTTATATTTTGGGATGGAGGGAGTAGTAATTTTCCCTCTGTATGGATTTCCAACACCCCTTTGTTAAAATGCAGTACTACTACTACTAGAAAATAGCGTCATTTTTTCACGTCTCTGGTGCATTTATAAGTTGTTACTGCATCTATGTTTGTAAACTATGCTTCCTGATCCTGAATATTTATTACTCATTTGCATTTAGTATGATCCTGAGCCAATCGTTGGATTTTGCTCCATGTCAGCCATCCTAGAAAAGTTAAATATTTAGTATGTACCCCTGCAGAAG