| mature miRNA: TAGGTACATCCGTATCTAGAC species: Festuca arundinacea database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|74459042|gb|DT715217.1|DT715217 s13dFA53G06SD052_512642 Tall fescue, Festuca arundinacea Schreb, young seedlings Festuca arun TAGGTACATCCGTATCTAGAC EST sequence (targeted fragment marked with yellow): GGCACCTTTAAAGTTGGTCAAAGGACTGATATAAGGCACCAAGTCAATGCCATTTGCATAGATTTTTTCATATGTATTCATGCGCGCATGCATAATTACTACAATGGTTCAGCTTTAAGCACTTCTTCGTTTTGTTATCTCTTCATGTACCACAAGATTGTATGATAACAACTCATGTCCTGGGTTTCATAACAAATATTCTACTCCCTCCGTACAAAAATAAGTGTCTCAACTTTTTCTAGATACGGATGTATCTACAACTAAAATATGTTTAGATACATCTGAATCTAGACAAAACTAAGACACTTATTTTTAGACGGAGGTAGTAGTAATTTTTTGATGAAATGGTGCTTATTGTGAGGTCATTGAGTGTACAATGCCCGGTCATCTTGTTAACTTGTAGCGAATAACTTCTTTAGAATGAGAATGAAAATAAAGATGTCTGTTACATGCTCAATTGACTATGAATATTTGTGGTGGAGTGGTTGACTAGGAGGGGTTTAAATCGCTTAAATTGTCCAATGCTAGCACAATTCTCTGCTAAAATTATGTTGTGCTTGATTAAGTGTTTTTTTAACAATTCAAGTGTATCTGAAATGCTTGTGTTGAGCTATAGCTAA | |||||||||
gi|74454882|gb|DT711057.1|DT711057 s13dFA34B08ST073_424923 Tall fescue, Festuca arundinacea Schreb, stems Festuca arundinacea cD TAGGTACATCCGTATCTAGAC EST sequence (targeted fragment marked with yellow): TCCACTTTGTCTAGATATGGATGTATCTAACCAACAAATGCATCTAGGTACATCCGTATCTAGACAAAGTAGAGTCATTTAATTTGGATCGGAGGGAGTAGGAATTTTGTGTAAAAGAAATTCCAAAGACGACCGTATATAAAAGATTATCATTGATATTTGAGATTTGTGGAAGTTAAGATATATGTAGGGTAGAAATCTTAAATGTTAGAAAGTTTAGTGTTAAATCTTATTGAAACTTACTCAAATATTCCATATTTGGATTTTATTTAGAGTAATGATCAGCCAAGATTTTGGGGGATACAATGAATTCGTAAAGATATTGTTCCAAATATGGCATGCTGGCAGGCTCATGATTCTCTTGGTTAAGCATATGGCCTTTTATTTCAAAAGTTAAATATTCTTTGCTTCATGAGATAAAATATTTTTTGTGTTTCTTGCATGATGCATGAGTTCCTCTGTTTTGGTAGTTGTTGGATCAAGTGTTAGCATTTGGAGAG | |||||||||
gi|74448604|gb|DT704779.1|DT704779 s13dFA46G03RT020_107622 Tall fescue, Festuca arundinacea Schreb, roots Festuca arundinacea cD TAGGTACATCCGTATCTAGAC EST sequence (targeted fragment marked with yellow): TCTGTCTGCTCTATATGTTCGCTAGGCTGCTACGTTAAGTTGTTCTTTTAAAATAGACTTCCTGTCATGATGTGGCAAGTGATTGTCACTAATTATAAGGTTCTTGGTTCCACGGAATGAGAGACAAGCCACTAATTAAGTGATTGTCACTAACTATACGTTGTTCCCCCTAAGAAAGGAAATTTAATATATGTGTGTTAATGTTGAGATCAAAATCAGAAAGAAAACCTACATGTCTAGGAAGGATAAAATATTGCTTGTGTGTTTGACACATGACCAAAGGAACACTTGCCAACTACTCCCTCTGTCATAAAATAAGTGTCTCAACTTTTTATATACGGATGTATCTACAATAAAAATTCATCTAGATACATCTGTATTTAGATAAAACTGAGACACTAATTTTTGGATGGAGGTAGTACCAGATAGAAAAAGCACTCCTGCCCAACATGTGCTCAGATGTCACCGGCGCCAAGCAGGTACTTTTTTTTCCCGTTATTCTATCAGCATGCGACTAAGTTTTGTGTCTTCATATAGACCTTAAAGTGTGTTTGACATGGAGAGAGTAATCTGGGGCTCCATTTCTTGCCATCTATGCTTTTGTTGTTTGTATGCGACCTATACTTTCAACTGGAATATCACTT | |||||||||
gi|74457693|gb|DT713868.1|DT713868 s13dFA34C05SD038_507906 Tall fescue, Festuca arundinacea Schreb, young seedlings Festuca arun TAGGTACATCCGTATCTAGAC EST sequence (targeted fragment marked with yellow): GCACGAGGCCAGGATTAGCTTTAGATTGTAGAAAACGAGTTTTAGGCTGATTTTTAGTGAAACCAGTTTTACTAATTTTTCAGTTAAAAATTGGTTTATAGGAAATCGTGTTTGGTTAGAAAATTGCAATACGACTTGTTATATTCCTTATCTGATACAAACTAACGATTCCTGTTGAGAAAATCACAGTGGCAGCAAGTGGACTGCAATAAAGTCGTTGAGAAATAAATGGGACGGAACCGGTTTGCTAGGATCAAGTAGATGGGAAGCGCGTTTATGGAAAAACAACAACTCCCTCCGATCCAAATTAATTGACTCGACTTTTTCTAGATACGGATGTATCTAGACATGTTTTAGTTCTAGATACATGTGTATCTAGACAAAGTTGAGTTAATTAATTTGAATCAGAGAGAATAATACTTTTCTTTTTCCAAAACGCGAAATATGAGGATTCCGAAAACTAAGTTTTCCATATCCATGGTCTTGTTAGCGTCGCCAAACAAGGTTTTATTCTGTTAGTCAGTTTTCTTGGTTTGTGCAAAACAAGTTCTATATATTCCACTTATCCAAACAACCCATTAAGGTTTCTCAATATATTCAATTTCGTGCCTCTTCTAATGCTGCTAAGAAAGTCCAAGTCATCTATA | |||||||||
gi|74428912|gb|DT685087.1|DT685087 s13dFA07G04FS036_519322 Tall fescue, Festuca arundinacea Schreb, Field Stress Festuca arundin TAGGTACATCCGTATCTAGAC EST sequence (targeted fragment marked with yellow): GGCACGAGGAGTAACTATGGCTGGGTATGGTTGTGGGCTCCCGATTAGTCGCCTTTATGCTCGATATTTTGGTGGGGATCTGCAAATCATTTCTATGGAGGGATATGGAACTGATGCTTATCTCCACCTATCACGGCTGGGAGATTCAGAGGAACCCTTGCCTTAAGAGATTCAGAACGACCCGCTGTCTCAGTGATCTAGTTCAGCTCGGATACCATTATTCCTGTTATTAGGATGATGCAATTGTTGTGCTGGTATGCAAATATAGTTACCAAGCCAGCCACCACTATGGTTCAGCTGTTCTGCTCTATTGGCTACGGACTATGTAGTGTCATCATAACTCAGTTTTTCTTACCGTCACTGGAATTCTGCTATCGTCACTGGAATGACGTTGCAGAAGTACGCAGAACCGATCGTCGCTTGGAGAATGTTATATGAATCATTTGTCTACATAGAGGAGCTGGTTTCGTCTACAATATGTCTCCATCAGCATATCTAATAACTTAACGTCTACTACCTTCATTCCAAAATAAGTGTTGCAACTCTGTCTAGATATGGATGTATCTAGATGCATTTTAATGTGTAGATATATTTATATCTA | |||||||||
gi|257189712|gb|GT049874.1|GT049874 CLS_cLiFproots_77a3_1_j01cLibkit5LD_E01 CLS_cLiFproots_plant Festuca arundinacea cDNA clone TAGGTACATCCGTATCTAGAC EST sequence (targeted fragment marked with yellow): ATGGCCATTGACATGACATCTACTCCATGATTAGTAGTAGTTCTATGGTTTCACGTCTCCATACTCAGCCATGGCTGCCTTAAGGTTCTACCCATCTACTGCAATCGTCGTTCCAAGGAAGAATTGCTCAAGGATTCTGACAAGATCTTCCATGGATAGCTGCTCAAGATCCGAATCCAAGCAAGCTTCCAGTTCTGCCAGCTTCACCTGCAAGGTGAACAAGGTTTATAAAGACAAAAGCACGGGCATCCTCTGTTACACTGATGAGAAGGGTGAATTGGTGTGTGAGGGTTTGGACGAAGGCCCAAGACTCACCTGGCAAGATCTGGAAAATTTGACCAAAGAGAGATTGAAGAAGACAGAAGATTGGGGGGAGAGGACGCTGCAGATCGCGGGCGGGATCGGCTGGAGCAGTCTCCAGACTGCTGCTAGCATCGTGAAGAAGTGAAAATGGCTTACACGTGTAGATTAATTTCGTGGTGATGTTTCAAGTCTTTGTAGAAGCATGGTGTGTCGATTGTATGCGTAAATCTCCTCTGCATGCTTGCTGCTTGCTATGTACCGCATCCGTCAGAAAATAAGTGTCTCAACCTTTTTTAGATACGGATGTATCTACGATAAAAATGCATCTAGATATATTCGTAACTAAACAAAATTGAGACACTTATTTTTGGATGGAGGTAGTAATAAGTATCTGATGTGTAGAAAGGATTGGAGGCTGATCGACCAGGTCAACTCCTACTTCTAGTGTCTGCTGGATAAGAAATGATTTTGCTTGCCTGCCAAAAAAAAATACAAAAAGGCCGCCTCGGCCCAGTCGACTCTAGACTCGAGCAAGCTTATGCATGCGGCCGCAATTCGAGCTCACTTGGGCC | |||||||||
gi|74451294|gb|DT707469.1|DT707469 s13dFA12G05ST036_112032 Tall fescue, Festuca arundinacea Schreb, stems Festuca arundinacea cD TAGGTACATCCGTATCTAGAC EST sequence (targeted fragment marked with yellow): GGCACGAGGCAGGTGGCGAAGGAGTTTGGGTCGTTCAGCGGGTACATCTGGGGCCACATGAACCACCGGCCGATGGTGGGCAAGTACAGGCACCACAAGTACATCCCGCTCCGCACGCCCAAATCGGAGGCCGTGAGCAAGGACCTCATCCGGCGGGGATTCCGGCTCGTCGGCCCCGTCATCGTCTACAACTTCATGCAGGCCTCCGGCATGGTCATCGACCACCTCGTCGGCTGCTTCCGGTTCTCCGAGTGTATCCGCCTCGCCGAGCGCTCCTGGGGAATCACCAACGTCGCCACGTAGCCCACTAGCCGAGCCCGACTATGCCAACCTCATGCTCGGCATCCCAATGTTTCCCTTACAAGTTTTCTTCTCCCCAGGATGCACAAGAGAGTTGCGTAGTACAACCTGTGTGTTATTTATACCTTTTTTTGGATTTAGTAATACTCCCTCCGTCCCACGAAAATTGTCTGAAATTTGTGTAAATTCGGATGTATCTAGACACTAAATAGCATCTAGATACATCCAAATTTGGACAAACCTCAGACAATTTCCATAGGACAGAGGGAGTATATAACTGGG | |||||||||
gi|74428664|gb|DT684839.1|DT684839 s13dFA05B03FS029_518826 Tall fescue, Festuca arundinacea Schreb, Field Stress Festuca arundin TAGGTACATCCGTATCTAGAC EST sequence (targeted fragment marked with yellow): GGCACGAGGCTTAAGACTAGGAAGTTTTGGCGCGGCGACACTCCACGCCCATGGGATCATATCGATGTTTGCAATGTCGTGGATCAATAGTACTACCTCCGTCTAGAAATAGGTGTCTTAGTTTTGTCTAGGTACGGATGTATCTAAACACATCTTAGTTATAGATACATCCATATTTAGAAAAAGTTGAGACATCTATTTTTAGACGGAGGGAGTACATCATATAATTGGTTGACATACGGCTTGATCTATAAGAATGCAAGTAGAGTAGTGCTACCTCAAGGAAAGAAAAAGTCATTGTTATAGGTAGATGTACCAAAACAGCAAGGATCCTCTGGTTTAGTTATCTCACAACTATACATCCTAGATAATTGCTGGCCTTGAAATGACAGCATTCTACTAACTTCTAGTTCAGCACTATCTTCATCCATGGTTGAACACTCAGCCATCTATGTTTAAACACTTTGGTCATCTCTTGTTGGGAATTTCTATGATGCCACTAGCTTCTTTATCAACAATGTTCATACCGGTTCTAGGCTTTGGATCAATTTCTCTGAGATGTTGTTGCAAGATTTAAACTCTTGGCTAGATCTCAACTCTGTGGAAAACTCTTT | |||||||||
gi|74449200|gb|DT705375.1|DT705375 s13dFA51C05RT034_109276 Tall fescue, Festuca arundinacea Schreb, roots Festuca arundinacea cD TAGGTACATCCGTATCTAGAC EST sequence (targeted fragment marked with yellow): GGCACGAGGGGACCACATTGGGTCATTGTACGCAGCCTTTCCTTGCAATTTTTGCAAGAGGCTGTTTCCACGACTTGAACCCGTGACCTCCTGGTCACAAGGCAGCAGCTCTTACCACTGCGCCAAGGCTCCCCTTCGTGTGTAACCTGTATAAGATGTTTTATTTTCTTTTAGAAACGTCAACTGCATATCAGGTGATACTGATTTCTGGTTTACGGTACTGAATTCTTGGATTAGTCGCATGCAAGAACTGAACTCTAAAGCATGTACTCCCTCCGTCCATAAAGAAGTGACTTAACTTTGTCTAGATGTGGATGTATCTGGATGTATTTTAGTTATAGATACCTCCGTATCTAGAAAAAGTTGAGTCACTTATTTCAGGACGGAGGGAGTAGAAAATATGTTGAAAATGTACAATTTTGCCCTGTTTGAATTATGTATATCAAATCTAATTATTATGCTTGTGGTGCATATCGTTTTTATTGATTGTGTAGAGCTTATTTGCCCTGTTTGAATTATGTATATCAAATCTAATTCATATGCCTGTGGCGCATATCATTTTTATTGATTGTGTACAGTTTATCTGGATCTTAATTTTCTGCATTTAATACATTTTTTAG | |||||||||
gi|74435641|gb|DT691816.1|DT691816 s13dFA15G02HS020_337321 Tall fescue, Festuca arundinacea Schreb, Heat-stressed shoots Festuca TAGGTACATCCGTATCTAGAC EST sequence (targeted fragment marked with yellow): CGCACGAGGGTATTGTGTGGTACAGCTTGCCAAAATGTCTTATATTGTGTGGCGGAGGGAGCAGATGAACTACATGACACCTGATTGCGGCCCACATGAACTGAACACATGTAACGTTGTCAAGTTACGGTGTAATCTGATTGCGAGCCAAAATTAATAAAACAAACAGGATGTAAGAAGTTGTCATGCTGTAACATAACGGCAGAACTTTACATATAGTTGTATGTACTCCCTCCGATCCAAATTAATTAACTCTAATTTGTCAAGATATGGATGTATCTAGTCAACAAACGTATCTAGGTACATCCGTATCTAGATAAAGTGGAGTCAATTAATTTGGATCGGAGGGAGTAACAAAATTAGAACAGCTTACATACATGTAAACCATTTAATCACTACTATGTTAAACTCTCTAATAACTACTTCTAGTACAAAAGTTATTATTTTTCAATGTTGTTTGGAAGTATAGTTTTGTAATTAACAGAAAATGTAATTTTTTTTATGTTACTC | |||||||||
gi|74448333|gb|DT704508.1|DT704508 s13dFA55G03RT020_107080 Tall fescue, Festuca arundinacea Schreb, roots Festuca arundinacea cD TAGGTACATCCGTATCTAGAC EST sequence (targeted fragment marked with yellow): GGCACGAGGCGCGCTCTTGCCGGCAGCTGGTTCTCGGCTTATGTCCTCCCGCGGTGCTCCGGGGGGACAGACAGTTCGGTCTGAAGGTACTCTGGCTGAACAACTGAAATCAATGGAACTCAGAAGCGCTGAGCTCGACAAGAAGTGGGCGGAGCATAACCAGCGCGCCACGGCAGAGTTTGAGGAGATCATGGAGATGCATCGCCAGCAGACAGCTTCGGATGAAGCTTATTATAGCGAAGTTCTGAGCCATAGCAGCGAAGATCTTTCAAAGTTTATGAAGAAACTGCACATAGTAGGGAAAACGTGTAATGTTCTGAACGTTGTGTTCCCAGTGGCCGCTATCCTTGTAACGATCGGGGTTAATATGTAGTAAATTAGTGTACGAACTCTCTCCGTTCCATGGAATATGTCTGAGATTTGTCAAAATTTGGATGTACCTATACACTAAATCATGTCTACATGCTTCCGAATTTTG | |||||||||
gi|74456933|gb|DT713108.1|DT713108 s13dFA21B03SD029_506386 Tall fescue, Festuca arundinacea Schreb, young seedlings Festuca arun TAGGTACATCCGTATCTAGAC EST sequence (targeted fragment marked with yellow): GCAGAGGGAGGACTTCTCTTTTCTTGTTTATTAAAACAAGTGCAGCACAGCCTGAATGATGCAGGGCTAGCTATAAAATATAGTACGTAAACAACAGACATGATAGATTATTTCACCTTGCTGATTAGGAAGAATAGCCATTCTCCCACTAAGCATAGTCTATTTTGCTCTTTGTGTCCGTTTACTCTTGGAGCGTTATATAAATCAATATAGGCATATAAGGCAGAACTACCTTTCTTGATGAAATTTGACCTGAATATTCTGTACCACTTTAGATCATACAAAGTTACCCCTTGCCAGGTTTCCTATCCTAACAGAATATTGCAATCTGACACTCGTTCCTTTTGGCAGACAAATCGAATAGCGGTGAAGGAATTGGTGAAAGAGTAAATACTTGAGTACTTTTCATTCATGTAGCTCCAGCGATATCTCGTACTCCCTCCGATCCAAATTAATTGACTCCACTTTGTCTAGATACGGATGTACCTAGATACGTTTGTTGACTAGATACATCTGTATCTGGATAAAGTGAAGTCAATTAATTTGAATCAGAGGGAGTAACATTTTATCTCAATATTCGTGCAGGCTGCGTCTAATTGGCTTTATATAGTTCCTTGGG | |||||||||
gi|74443434|gb|DT699609.1|DT699609 s13dFA26B03LF025_122886 Tall fescue, Festuca arundinacea Schreb, leaf Festuca arundinacea cDN TAGGTACATCCGTATCTAGAC EST sequence (targeted fragment marked with yellow): GGCACGAGGCCTACACCATCAGCACCTCCGTCAACTGCAACACCATCAACTGATCGATCCACTACTACTCTCCGGCGCCACAGTCACACACACGTTTACACCTATATTATACATACTGAATAAAAGCTCTCATGCATCTCCTCGTCAGAGATCGAGAGGAGTACGAGCACTAGAGCCAGCCCTCCGTGGGCCGGCCGGCCACCATTGTATCAGTGTTTGGTTGTTCCTTTCTCTCCGTTTGAGGAGAATCCATCGAGAGTTTGCTTTGTATTACTCCCTCCGATCCAAATTAATTGACTCAACTTTGTCTAGATACGGATGTATCTAGACGTGTTTGTTGACTAGATACATTTGTATCTAGACAAAGTTGAGTCAACTAATATGAATCGGAGGGAGTACCATATTTATGCACTGCCAGCGTAGTGTGTATGTCTGCATTTATATATTTATTCCGCTCTTTTCGTCAATTGCGTCCTTCTG | |||||||||
gi|74446181|gb|DT702356.1|DT702356 s13dFA22G10RT084_84453 Tall fescue, Festuca arundinacea Schreb, roots Festuca arundinacea cDN TAGGTACATCCGTATCTAGAC EST sequence (targeted fragment marked with yellow): GGCACGAGGCTATTACGTGCCGATCTGTTCCTATTAGTTGCTGCGCTCCTTCGTTTGGTCCCAAATCATACACAATCGGACGCCACGGTCTTCCCTGGAACTGGTCGGCTCTCGATTTGTTGATACTCAAAAATGTTTGCCTGATATGTCCGTAGTTCTTACTGTCGTATTGTTTGGGTTCGGTCAATCTCCTAGCCTACCCCCCCTTTTTTTTTCTAATCACAAATAGACGGTACTTGATTTCTTATTATATTTGGGTAGTACTATTAGCACTATTTGTTTGGGCAGCAAGCTTTATGTTGGAGATGTGAAACTGTGAGTTTAGATCTCTGTCTCATGGCTGCCAAGTTTTCTTGTCTGCATAGTCCTTGGGTTCTCCTTTTGGCAGTTCTATTGTTTCCTAGCAATGTTTTTTTTAGATTTGTTTGAGGTAGTTGTTCATACGATCTGTACCCTGTTCCCTATGTTACTATTCCTAGAATTTTGAATCTGGTGAAGAGCTTTTGTTGACTACTCCCTCGGTCCTACAACTTATTCTTGATATGGATGTATCTACAACTAAATTGTATCTAGACAAAAGTGAGACACTTACTTTANGAAGGANGTAATATATTGTGTAGTACTAACCATGCTC | |||||||||
gi|74436927|gb|DT693102.1|DT693102 s13dFA26E07HS055_390217 Tall fescue, Festuca arundinacea Schreb, Heat-stressed shoots Festuca TAGGTACATCCGTATCTAGAC EST sequence (targeted fragment marked with yellow): GGCACGAGGGAGAGCACCATTACTCCACAACTTCTTAGGTCAATGTGCCCCTCTTCCTTTGTGTAGTCAACTTTCAGAGCCCATCCTGACTATAGGGTCAAGAAAAGAACGTGTCAGGCGTAAAGAACACCACTACTGGTATTATTGGCGCATCACACCAGTGACTTGTCTCCCAAAAGGAGCCAACAAGTCGTGCAATAATGCTAGACTATCTGAATTATTAGTTGCTTTGTCAACAGCCCATTGAAGGTCAGCATACGTGGCCTACCATTTTCTCCTGCCAACTTGTGGATTCGGGTCAAATCCTTGGATGCTAAGCTTAGGGGCCTCTTTGATCCACAGGACCCTAAAACCATAGGGATACGAAAACACAGGAATTGAATACCATGGCATGGTTCAAACCTACTCCCTCCATTGCACTAAATCAAGGGCAACAAATATGGAAAGGAGAGAGTACATAAGCTGGAACACACAAACATGTACTCCCTCCATCACATGAAACATATCAAAAATTTGTCTAAATTTGGATGTATTTA | |||||||||