| mature miRNA: TGACGATTTCTGCATCGGCGA species: Festuca arundinacea database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|257174070|gb|GT035691.1|GT035691 CLS_cLiFproots_19a1_1_a15cLibkit5LD_A08 CLS_cLiFproots_plant Festuca arundinacea cDNA clone TGACGATTTCTGCATCGGCGA EST sequence (targeted fragment marked with yellow): CCAGGGGAATTGAACAGAGAGGCGAATTGTCGCTGGAGCAGAAATCGGCAGCATGTCAGGATGGTATCGTGCCAGGCTTTGGCCGTCACGGAAACCACCCCTTCGCTGCAGGCGGATGTCCCCGAATCGCATGCTGCTCCTTCATTCCAGCTGCCGCTACGTCACTGTTGTGGATGTGGTGCACAATTCCATACAAGGGAAAAGTCCACTCCTGGGTATTTGCCTTCGCATATTGTAGAAGCTAAGCAACGCCAAGCCGAAAGTCTAATCGATGACGGCGTCGAGATCAGTGCGGCGATATCGGAGACGTCTCACAGCCTGATCTGCATGCGATGTCATCATTTAACATTCAATGGCTCTCCTCTACAGCAGATTGTCGCTGATGACTTTCGAAGCGCCCTGCACGATCGCATTTTAGGCCAAAACCTCCGAAGCTCAGTTATTATGAAGCTGACAGATATAACTGATTTCAAGGGGTCGATCTTCTCGGATTTAACGGATATCATCGGCGGCTCGAGCCCTGTGATCTTGGTCGCCAACAAGTTCGATCTGCTTCCAAAGGGCGCATCGTTGTTTAGAGTCAGGGATTGGGTGACAGCTCAAGCAATGGCCATGCACATCCCGGTCCGTAACGTTCATGTCGTTAGTTCTAAGACCGGGCAAGGCATTCCAGCACTTATCAGCGACGCGCAAGCCCTAGCACAGCGAACGAATCGCGATATTTTCGTTCTTGGGTCTTGCAATGTCGGCAAAAGCACGTTTATCAATCATTTACTTCAGAAAGGAATGATCAAAGGCGTGAATCGGGGAATGCGAATGAAAACGATCCGCTTCAAGGACAACGTTAAAGAAGTCAGTGAGCAAATCCCAGTCACGACGTCCAATCTCGCCGGTACGACCCTGGGCATTATTCCCTTTACAGTTCGCGGGCCTGCTTCTCAGTCTGCGGTCAAGCTATTTGATACTCCCGGGATCTACCCCGACCTTCCCCTCCTACGTCGATTGACCTCAGCGGAACGCGATCTGATTGCAT | |||||||||
gi|257180905|gb|GT039891.1|GT039891 CLS_cLiFproots_29a4_1_j10cLibkit5LD_E05 CLS_cLiFproots_plant Festuca arundinacea cDNA clone TGACGATTTCTGCATCGGCGA EST sequence (targeted fragment marked with yellow): ATAATAATCTAGTATTTGCTGCACTTTATGTCACAGTTTTTGAGCAGCGATCATATATCGGCAACCCCTACCCCCACATCTAGCTGGAGACAAAGCAGTTTTGAATCGAGTGCAGACCGAAGAATGGAAAGGTATGATGCAGGTAGCTTTCATTTGGTATCATCTGTTCGATTCTGCCGCAACGTACAACTTAATTCGCGTGTTCGTCGCGAGTTATGTATTGATGACTGGGTTTGGTAATTTCATGTTCTTCCAGTCCAAGCAGGACTTTTCCTTGCTTCGTATTCTGAAGACCCTGTTTCGCTTAAACTTTCTTGTCGCCATCCTTTGCGCCACCCTGGGTCGTGAGTGGATGCTGTATTACATTTGTCCACTGCACACAATCTACTTTCTTTTCGTGTGGGCTGTCGCCCGATTCCCGCCATCGCCGAGCTCAGGTCATGCTGGCGCCTGTAAAGCGATCGCCAGTATTGTCTTCTTGTTCGCTTTTTTTGCTGTCCCTCACGCATTCGATACTGTCTTTTCACCCTTCGGGGGGTTATTTTTGCGGAATGGCTCTCTTTGGGAATGGAAATTTCGTGCGACACTCGATGCATTTGCCTCTTCTCTCGGGATTTTAATCGCATGCATGCTTCCCCTTCTTGTCACGTCTTTGAACAAGCTTGAAAAGCGAAAACGTATCAATATCACTGTTTTAGCCGCCTTTATCATTGTCGGGTGGCTAGTTCTCTGTTATCCGATGGAGAAATCGTCGTACAATCGTATCCACCCCTTTATCGGATTCATTCCTATACTTTCGTACCTTGTAATAAGGAATATTTTTCCGTTGGTTAGGGAGATGTATATGCCTGTGTTCCAATTCATGGGAACAATCACGTTAGAGACTTATCTTCTCCAGCTGCATCTCTACATGAGTCATGATGCAAAGATGGTAATTTCCTATCTACCTGAAAACCCGATCATGAATTTCGTACTGGCCACTGTTTTGTATTTATTGACATCTTATGCCGTGTTTAAAGCAACCGCGCCATTATGATTTCTGTTTCGTCCAGTAGTTGGTCGAAGTCCTGCTAGCGA | |||||||||
gi|257185974|gb|GT045998.1|GT045998 CLS_cLiFproots_61a1_1_m03cLibkit5LD_G02 CLS_cLiFproots_plant Festuca arundinacea cDNA clone TGACGATTTCTGCATCGGCGA EST sequence (targeted fragment marked with yellow): CACCTACAACCAGTCCAGGGTCGCCGAGCAGATGGGGAAGGTTGGCGGGGAGCTGGACATCGACTTCGTGGTCTCTACAGGGGACAACTTCTACGACAACGGGCTCACGGGCGTCGACGACCAGCAGTTCGAAGAATCCTTCACCAACATCTACACCGCCACGAGCCTCAACAAGCCGTGGTACCTCGTCCTGGGAAATCATGACTACAGGGGTGATGCTGTAGCGCAGCTTAGCCCAGTCTTGAACAAGATCGACAGCCGGTTCATTTGCAAGAGATCGTTCATCGTTAATGCAGAAATGGTCGAGTTCTTTTTTATCGACACCACTCCATTTCAACTCAAGTACTGGACTCACCCTAAAGACGACCACTATGACTGGAGAGGAGTGGCGCCTCGAGGAAATTACATTAAAAGTCTGCTCAAGGATTTGGATGAGGCAATGAAGAAATCAACTGCAAAGTGGAAGATTGCTATTGGGCATCATACCATTAGGAGTGTCAGTGACCATGGGGAGACCAAGGAGCTCCTACAATTACTTCTTCCGGTCCTCAAGGACAATGCCATCGACTTCTACATCAATGGGCATGATCATTGCCTGGAACACATTAGCAGCAGAGACAGTCCACTCCAGTACTTCACCAGTGGAGGCGGTTCGAAAGCATGGAGAGGAGTCTTTCAGCCAACTTCAGACGAGCTCAACTTCTTTTACGATGGACAAGGGTTCATGTCCCTCCAGCTAAACCAAGACCGAGCTGATTTCATCTTTTATGATGTCTTTGGGAACATCTTGTATAGCTGGAGCTCAAGCAAAACAAACTACCTCCAGCCCTCCATCTATGTTACTGAAGAATGAGGGAAATGCAGACCACGGCAGGATAATTAGCTTGGTAGCACTATTTGTATGAGAAATTGAATGTGCCGTTGTGGTAAGTGGTAAAGGAAATAGATTGGCATTGTGTGGTTCACTGATGGAATATTAGACTGGCTGTGAATTTTCTATA | |||||||||
gi|74445153|gb|DT701328.1|DT701328 s13dFA16A03RT021_72763 Tall fescue, Festuca arundinacea Schreb, roots Festuca arundinacea cDN TGACGATTTCTGCATCGGCGA EST sequence (targeted fragment marked with yellow): GGCACGAGGGAGATGCTAAAAGATACCAAAAGCGCGTCTATGCAGAATTCGTCAAAATTGGGCCTCTCCAATGAGGAAGCACGAATGTTAAAGCGAAGCCTGGAGTTCAACTGGCATGCGCTATTGGAGGATATTGGTCTTTGGATACCAGTAGAAGTCCCACACACTGAACATGATGACAAACCTGAGAATGAACCAGAAGAAGAAGAGATAATAGCAGGCCCACCTTTGAATCCACAATGCAATGCTGAGCTACATGCCGATTATGGTGGCGCTGCTGTGAAATGGGGCTTAACGCACCACAAGGAATCTGCTGCTGATTGTTGTCAAGCATGTCTAGACCAGGCTAAGAATGCCAAGCCAGGTGAAATGAAGTGCAACATATGGGTTTATTGCCCATCAGAATTTGGTTGCTATTCACCGGACAAATATGAGCATAAACATCAGGAGTGTTGGTTGAAACAGGATGACCGGCCTAAACTGAACTTCAAAGACAAGTACACCGAGTCTTACAGAGATTCTCATCCCAGAGCCCCTGTTGTTGTGCCCTGGATGTCAGGTGTCACCAGCGTGTAGCCCAGCGGCTCATCCGAGATTGGAAGATATTCACTGATCTTCA | |||||||||