miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TTAGTAATACTCCCTCCGTCC
species: Festuca arundinacea
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|74453226|gb|DT709401.1|DT709401 s13dFA56C02ST018_400311 Tall fescue, Festuca arundinacea Schreb, stems Festuca arundinacea cD

TTAGTAATACTCCCTCCGTCC
||.|||||||||||||.|||
TATTATTATGAGGGAGGTAGG

EST sequence (targeted fragment marked with yellow):
GGCACGAGGGTTAGGCTGATTGGACCATTCTATGGTTCTGAACACAGTTACTAGCATGATATGAATAGATTTGTAAGATGTGCTACTGATCGGATATAAAAATGATTAAAATCTCAAATTCTAATCGTGCTATTGCTTCTGAAGAACACTTACAGAGTCCAATTTCAAAATGGTTATTTCTTCATCTCAGCATTTGATGACTCTTAAAACCCCCTTTTTGTAGGATGATTGGAGATGTCACCCTTTAATTAAGCTTGATATCATTGATACATGTTCTGTTTTTACGATTTGCTACTAATCCAGATTAAAAAAATTACTCCCTCCGTCACAAAAAGGATGTCGTAGATTTTTCTGAATTTGAATGTATCTATACACTAAACCGCGTTTAGATACATCCAAATTTAGATAAATCCGTGACATCCTTTTCAGGATGGAGGGAGTATTATTATTATGAAATATTTAACTGCATATAATAGTGATGCTAAATAACACCCACAGTCCCCTAATTCAGATATGTTATTTCTTTATCTCAGCTTTTGGTGCCTCTTGTAAGCGCATACCGCTATG