| mature miRNA: TTATCAAGAAGGTGGATGACA species: Festuca arundinacea database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|74448660|gb|DT704835.1|DT704835 s13dFA57D03RT026_107734 Tall fescue, Festuca arundinacea Schreb, roots Festuca arundinacea cD TTATCAAGAAGGTGGATGACA EST sequence (targeted fragment marked with yellow): CATCAAATAACATTAATTATGTTGGAACAGGAATAGACAGGCACCAGGCACACATGTCTGCCATCTTACATGCCACTACATTCGATAAACTAAAACCAGTCTAGATATCACAGGTAAACAAGAACACAACTCAAAATCTCTCCAGCCAACCGAAGCGAGACCCTCAGATGCACATCCATCTTAACGGTTCGCCTTGGCAACGCGCTCAATCTCATCCTTCTTCTTGATGGCATAGCTGTTGGATGAGCCCTTGGCAGCGTTGATCAACTCATCCGCGAGGCACTCAGCGATGGTCTTGATGTTGCGGAATGCGCTCTCCCTGGCACCGGTGGTGAGCAGGTAGATGGCCTGGTTCACCCTCCTTAGGGGAGAGATATCCACGGCCTCCTCCTCACAACACCAGCAGAACCGATACGGGTGGCATCCTCACGTGGCCCACTGTTGATGATGGCGTCGACGATGACCTGGATCGGGTTTAAGTCGGTGAGGAGGTGGATGATCTCCATGGTGTGCTTGATGATGCGCACGGCCATGATCTTCTTGCCGTTGTTGCGGCCGTGCATCATGAGCGAGTTGGTGAGGCG | |||||||||
gi|257172051|gb|GT033024.1|GT033024 CLS_cLiFproots_11a2_1_o14cLibkit5LD_H07 CLS_cLiFproots_plant Festuca arundinacea cDNA clone TTATCAAGAAGGTGGATGACA EST sequence (targeted fragment marked with yellow): ATATTGTGGTCAGTAGATCTTGTTGGCGGATTTAAGATGCCTTTGCCATCACAATGCCCTAAGGATTTTTCCTGCATTCCGGAGCATTTTCTTGATGATGCAATGGATTTACTTGCTCTAACCTCTAGAGTTCCTAAAGCTTTGGAAGGCTTCCCATTGGATGACTTTCTCAATTTCAACATCATGTTCATGGCGAGTTCTTCTTACATTAAAAATCCTTATCTGAAAGCAAAGATGGTTGAAGTTTTGAACTGCTGGATGCCACAAAGAAGCGGCTTGAAATCCACAGCCTCGTTGTTTGAGGGGCACCAACTATGTCTTGATTACCTAGTAAAAAACCTTCTAAAGCTTTATGTGGACATTGAATTTACTGGCTCCCATACACAATTCTTTGACAAATTTAATATTCGACACAATATTGCTGAGCTTCTTGAGTATTTATGGNNNNNNNNNNNNNNNNNNNNNNNTTGGAGACAAATAGCTAAAGAAGAGGAGAAGGGCGTATACTTGAATTTTCTGAACTTCCTTATCAACGATAGCATCTATCTTCTTGATGAGAGTTTGAACAAAATTCTTGAACTCAAGGAAATAGAGGCTGAAATGGCTAACACTGTTGTGTGGAATAGCAGACCCGCTCAAGAAAGAGAGGAGCGTTTGCGTGTATTTCATCAGTCAGAGAATATTGTTCGTTTTGATATGAAGCTGGCAAATGAGGATGTTGGGATGCTTGCCTTCACGTCAGAACAAATTCCAGCACCGTTGCTTCTTCCAGAAATGGTGGAAAGGGTGGGAAGCATGTTAAATTACTTCCTCTTGCAACTTGCTGGTCCACAGAGGAAATCGTTGACCGTAAAGGATCCCGAGAAGTATGAGTTCAAACCGAAGCAGCTATTGAACAGATTGTTACCATCTATGTCCACATCGCAAGGGGTGATAAGGAAGCTATCTTCCCTGCTGCAATCTCGAAAGATGGACGATCATACATGAGCAGT | |||||||||
gi|257179972|gb|GT043601.1|GT043601 CLS_cLiFproots_4a2_1_i10cLibkit5LD_E05 CLS_cLiFproots_plant Festuca arundinacea cDNA clone 4 TTATCAAGAAGGTGGATGACA EST sequence (targeted fragment marked with yellow): CAGATAAGTGATGCGAAAAATACTTTTCTTGACATGCACAGGTATGGAGTTGCTCCCACTGTGCCAGTGTACAACAGTTTGATTGATGGAGCTTTCAGGTCTGGTGATGCACAAGAAGCATTAACGGTTTACTTGGACATGAATCGCCTAGGTTTGCGCCCAGATGAGTTCACCTGCAGCATAGTTGTAAGAGGCCTCTGTGATGGAGGTCAAGTGCAGGTAGTGGCCAGGTTTCTTGAAATCTTGCAGCAATCTGGTATTTACCTTAATGCTGCTGCATACAATGCACTAATTGATGAGTACTGCAAGGATGGAAATCTACAGGAAGCCCTGGCAACATGCACAAAAATGAGCGAGGTTGGAATTGTGCCCAACGTGGTGACATACACCTCCTTGATAGATGGGCATTCAAAGAAAGGAAAGATGGAAGTAGCAATGGCTATATACACAGAGATGATAGCCAAAGGGGTTGAACCTAATGTTTTGACATATACGGCTCTGATTCATGGCCATGCCAAGGATGGTGACATCGATGCTGCATTTAGGTTACAGAAGGAGATGACGGGGAAAGGCATTTCTCCCAATTCAATCACAGTGTCAGTTCTTGTTGATGGTCTGTGCAGAGAGAATAGGGTTCAAGATGCAGTCACTATCGTCCTAAAGTACTCTGGGCAGAAGAAGCATGGTGACATTCATCCCTGTTTTTCGAACTCTACAACTGAGGAAGGCCATTCAATCCCTAACAGTGTGACATATATGACCTTGATATATGGTCTTTATATAGATGGCCGAAACCATGAAGCTGGCAAGTCCTACTCTTGCATGAGAGAATCTGGTATGGTGCCTGATAGCTTCACTTACTCCCTACTGATTCGGGGACAGTGCATGCTTGGCTATGTCTTGAATGCCATGATGCTCTATGCTGATATGGTTAAGATCGGTGTTAAGCCCACGAGATATGCCATGGTCTGCCCTGAGATTTGGGTCAAGGGATTCACCAAACGGTCTCAAAACTCAAAACG | |||||||||
gi|257174073|gb|GT035694.1|GT035694 CLS_cLiFproots_19a1_1_a21cLibkit5LD_A11 CLS_cLiFproots_plant Festuca arundinacea cDNA clone TTATCAAGAAGGTGGATGACA EST sequence (targeted fragment marked with yellow): CATAGCATACTACCTTTCCATTTTTAAAACAAAATCCTACCATGCATACTAGTTAAAAACAAAACACTAATGCATAAATAAAATAGGTAGGATTGAATGTCACTTGCCTTTTTGGTAAATGAAGATCGTTCACTTCTCTCAACGAAACACGTCGCTCTTCACACGAACTATAAGATAAAATATAGCGCATCATAAACACACCATTCAACAACAACAAAATCAAACAAGACAACAATCGGAAATCGCTCTATGGTACTAAGGTGTGGCATGAGGTTTGGCTTGCAAGGTATGGTCTTGGGGTGTTGGAATGGCTAAGTCACATGATTAGAAAGTAATGGACCATCCAGATAAAATTGAAGAATCTTTATGCTTTACAAAAGCATGAAAAGAATTTGGAACGGCTCATGTTTATTGAATCACATAAATGACAAATAGTGCAACAACCATACTATTGAATAAGTGTGACAACAATTACGCAAAATAGTATAAATTACACATAGGCTTGGGTATGGATTTGTGGTATGTTGAATTACTCAATTAATTCATTTGTAAATTGAATAGTTTTATTTTAGGTCAATGGGTCTAATCGAGGTTAGTTAGGCATGATAGATATTGGGATTGGATTCGAGGATCCTAATGGATAACAAGGGTTCCACACATGTGATATGGGGTAGAGTATCTCCATCCCACTAGAGCAAGGTAAAAGTCTAAAATATGACATGTTACACTTTACTCAATTAACTCAATTGTTATTTGAATAATATGGACTAGGATATTATGATTCGGAGAGATGTGATCATGGAACATAATGAATGTGTCTAAATGATTTTGATAGATGGACTTGACTATAGGCTTCACTTTTGTAAAAAGAATCTTGTTTAGAATAATTAAAGAAATGCATCTATAATGAAAATACTCAAATCCTCATATTTGGATTTGAATATTTGCAAAGTGATTCAATTATTTTGGATAATGGTGCTACTGGATGGAGTACTGTGAACCAAGGTTTATAC | |||||||||
gi|74447277|gb|DT703452.1|DT703452 s13dFA26B03RT029_86645 Tall fescue, Festuca arundinacea Schreb, roots Festuca arundinacea cDN TTATCAAGAAGGTGGATGACA EST sequence (targeted fragment marked with yellow): GGCACGAGGAGAGAACTAGTCTCGAGTTTTTTTTTTTTTTTTTTAAAAAGATCAAGAAATTAAGGAAATAGTCAAGCTGCTGCTACCGACATTTGCATCCGTGCATACTGCACCAATTCATAATGCAGGAGCAACAAACAGCAGCAACATCATTCATCAAATAACATCATGTTGGAACAGGCACCACGCACACATGTCTGCCATCTTACATTCCACTACTTCATCATTCGATAAACTAAAACCAGTCTATAGATAGCACAGGCAAACAAAGAACACAACTCAAAATCTCTTCCAGCCAACACAAGCCAACCCTCAGATGCACATCCATCTTAACGGTTCGCCTTGGCAACACGCTCAATCTCATCCTTCTTCTTGATGGCATAGCTGTTGGATGAGCCCTTGGCGGCGTTGATCAACTCATCAGCGAGGCACTCGGCGATGGTCTTGATGTTCCTGAAGGCGCTCTCCCTGGCACCAGTGGTG | |||||||||