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mature miRNA: TACTCCCTCCGTGCAACAAAA
species: Festuca pratensis
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|237620513|gb|GO894429.1|GO894429 RDD_cLiFpEfI12nb_30x1_3_D07_cLibkit5_B04 RDD_cLiFpEfI12nb_plant Festuca pratensis cDNA clone

TACTCCCTCCGTGCAACAAAA
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ATGAGGGAGGCAAGATATTTT

EST sequence (targeted fragment marked with yellow):
ATTGCGGTGCTGATCAGAACTACAGTACAATAGAGATTACCGTGCTGGTCAGAACTACTCCCTTCATCCCGTGACATTTGTCTGGTTCATTTAAATTTTGATAAATCTTAGATAAATTTTATAGAACGGAGGGAGTATATTATTATTTTTTAGCGTGGCAGGGTCGTGCATTAGCAACAGATCCCGGTTTATGTGATGGGAAAGGAAGCTTGTCACGTTAGTACACTATTACTCTTTCAGCATCTCGATAAAAGTCACCATAAGACTACCACAATAAAGATGTCATAGAAAGTTTTATACATTTTATCAATGCAAAAACCTAATGTTTCACTATAAGTAATGATGAGAGAGATTTCACGCCCATAAGCTGGTGTTGGCTGCACGATCATCTGTATTTAGATCTAAACTATTTGATGATGAATTGGATGGAGAGAAGAATGAGGTTGACGACAGCGAGGATCTCAAAGAGATTGTTATCGATGATATAGAGCCAAAGGTTTTCAAGGCGATGCTTCATTTCATCTACAGAGATTCCCTCGTTGATGATTGTGAGTTGGATGCATCAAGCTCTGGGGGTTCTATTTTTGATACTTTGGCGGCAAAATTGTTGGCTGCAGTAGACAAGTATGACTTAGCAAGGCTAAAATTGCTTTGTGAATCTTACTTGTGCAAAGGCATTTCTGTGGTCTCAGTTGCGAGTATTCTAGCATTGGCTGATAGTCACCATGCTATGGAGCTTAAAACTGTTTGCCTAAAATTTGCTGCGGAAAATCTTTCAGCTGTGATCCGGACCGAAGGATTTGATTACCTCAAAGACAACTGCCCATCACTCCAGTCAGAGATACTGAGAACTGTTGCTGGGTGTGAGGAACC