miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TACTCCCTCCGTTCCAAAATG
species: Festuca pratensis
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|237616492|gb|GO890743.1|GO890743 RDD_cLiFpEfI12nb_20x1_3_J15_cLibkit5_E08 RDD_cLiFpEfI12nb_plant Festuca pratensis cDNA clone 

TACTCCCTCCGTTCCAAAATG
.|||||||||||.|  ||||.
GTGAGGGAGGCAGGTGTTTAT

EST sequence (targeted fragment marked with yellow):
CAATAAGTGTACATCTAGGTTTTGTGTTTAGTTAAACTCTTTAAACTTTGATCACATATATAGGGAAAAGTAGTAGCATTTATGACACTAATTTAGTATCCCGAGATTCGTTTTGAAATGTAGTTTCAAATTATACCAAAATCTTATTATATATGTTGCTACTTTTTTTTCCACGGTTGGTCAAAACTTAAAATGTTTGACTTAGTACAAAAGCTAGAAGTACACTTATTTGTGGACGGAGGGAGTGCAACCAAGTAACCATGCATTCTTTAGGCTTATATGTTTATCTTTCGTTTGTAAGATGTTAGAGGAAACTGAACTTCGAGACAAGTAGTGGAGTTCTGTTAGGAAAGGGACAAGTCGTCTTTTAAGTTCTTGTCCGACTATAACTCACACACCACACCCCACGCTATCTTACAATCAGCCTACGCACGCATGTCAGTGATTGTAGCTGAAGGGCAGCAACTCCTTTCCCTCAATCTTCTGCTGGTAGCGCAGTGGGTTCACACAATTCGGTGGGGAAAGATGAGCAAAATGGTTCAACGCTGGGAGGGTCCGTTGGCAAGATAAACATCAATAGCGCTTCACACGCCCTCCAACTCCTCAACTTCATCAAGTGGACGCCTCGGGGTCAAAAGAGGATGTAATGCACTACTAGTACATAGTATATGTATTCAGTTAAGGCACAACACAGGAGATTCTTTAAGAAAAATATTTGCTTTCCCAAAAAAAAAAAAAAAAAA


gi|237620513|gb|GO894429.1|GO894429 RDD_cLiFpEfI12nb_30x1_3_D07_cLibkit5_B04 RDD_cLiFpEfI12nb_plant Festuca pratensis cDNA clone 

TACTCCCTCCGTTCCAAAATG
|||||||||||||| | || .
ATGAGGGAGGCAAGATATTTT

EST sequence (targeted fragment marked with yellow):
ATTGCGGTGCTGATCAGAACTACAGTACAATAGAGATTACCGTGCTGGTCAGAACTACTCCCTTCATCCCGTGACATTTGTCTGGTTCATTTAAATTTTGATAAATCTTAGATAAATTTTATAGAACGGAGGGAGTATATTATTATTTTTTAGCGTGGCAGGGTCGTGCATTAGCAACAGATCCCGGTTTATGTGATGGGAAAGGAAGCTTGTCACGTTAGTACACTATTACTCTTTCAGCATCTCGATAAAAGTCACCATAAGACTACCACAATAAAGATGTCATAGAAAGTTTTATACATTTTATCAATGCAAAAACCTAATGTTTCACTATAAGTAATGATGAGAGAGATTTCACGCCCATAAGCTGGTGTTGGCTGCACGATCATCTGTATTTAGATCTAAACTATTTGATGATGAATTGGATGGAGAGAAGAATGAGGTTGACGACAGCGAGGATCTCAAAGAGATTGTTATCGATGATATAGAGCCAAAGGTTTTCAAGGCGATGCTTCATTTCATCTACAGAGATTCCCTCGTTGATGATTGTGAGTTGGATGCATCAAGCTCTGGGGGTTCTATTTTTGATACTTTGGCGGCAAAATTGTTGGCTGCAGTAGACAAGTATGACTTAGCAAGGCTAAAATTGCTTTGTGAATCTTACTTGTGCAAAGGCATTTCTGTGGTCTCAGTTGCGAGTATTCTAGCATTGGCTGATAGTCACCATGCTATGGAGCTTAAAACTGTTTGCCTAAAATTTGCTGCGGAAAATCTTTCAGCTGTGATCCGGACCGAAGGATTTGATTACCTCAAAGACAACTGCCCATCACTCCAGTCAGAGATACTGAGAACTGTTGCTGGGTGTGAGGAACC


gi|237617756|gb|GO890923.1|GO890923 RDD_cLiFpEfI12nb_21x1_1_K05_cLibkit5_F03 RDD_cLiFpEfI12nb_plant Festuca pratensis cDNA clone 

TACTCCCTCCGTTCCAAAATG
||||||||||||||| ||||.
ATGAGGGAGGCAAGGCTTTAT

EST sequence (targeted fragment marked with yellow):
CGAGCGCCTAGGACGGAGGAGCACGACGAGCAGATCTCAGATTTAGCGAAGGGTAGATTGGGAAATTTACTGGTTTTCACCTGGTCGGAAAATCTCCAGGACGTCTTATATTTCGGAACGGAGGGAGTATATGAGATCTCCGGATCTTGTGTATTGTTCAGAACTTAAGTTAAGACTGTCTCGTTTGATCCTGGTATTCTGGTACGCTATGCAGTATGTTCATGCTATGAGATGCTTCCCACGAATGGGCATGTATTTATATCCTCTAATGTAAAACTCTCCTTGTACAAATGGATGGTACTCGTATGAAAGGAGCAAACATGGCAATGCCAGGATTGAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA