| mature miRNA: TTTGGATTGAAGGGAGCTCTG species: Festuca pratensis database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|237624273|gb|GO897286.1|GO897286 RDD_Norm_In36x15x12_H06 RDD_Norm_plant Festuca pratensis cDNA clone 12H06, mRNA sequence TTTGGATTGAAGGGAGCTCTG EST sequence (targeted fragment marked with yellow): CACATTAGCTCGCGCACCTACAGTTTGTTTTTTTCATGTTCGATCCTTCGATATTAAGGACCCCATTGGGCCCGATACGTCGTCTTCTGCTGTCATGACAGCATCCCTACACTCCATTTGTGTGTGGATTTGAAATCATGGATGACAGGCGAGAACTTCGCAAAATGCCCCGTGGGGAAAGGTGTCCAGAATGCGGAAGTAGAAAATGGTATCTCCAGGACGGGCTGCGGTATTGCGCTCGAGGCCACCAAATTGAAGTAAAGCCAATGATCCTTGAGTGCACACATGGGCCAAATCAGACGTATGGCTGATACTCAGTCGCAGGGCTTCATTCAATTCGAGGTTGGCGGNGAGGAGGTCATGGGACGGACTGGCCCTGTTGCNAGGCGAA | |||||||||
gi|237619666|gb|GO891573.1|GO891573 RDD_cLiFpEfI12nb_23x1_1_E13_cLibkit5_C07 RDD_cLiFpEfI12nb_plant Festuca pratensis cDNA clone TTTGGATTGAAGGGAGCTCTG EST sequence (targeted fragment marked with yellow): TTGTCTTCTTGCTTCTCAGCCTCTGTCCTGTAAAGTTTGTGATTGCGATTGCTATTGCGATTGCGACTTCCTTGTGTACCCTATTATTGTCGGCCTTACCGCGAGAAGGTCACTGAACTTCGACCATGGCAACAAAAGAGGTGCCACTTTTGCTTTATGGCACGGCCTGGAAAACCGACAAGACCGCGAGGCTCACCCAGGAAGCTGTGACCAACGGCTTCTCTGGCATAGATACGGCCAACTACCCAACAGCGTACGAGGAGCTACTAACAGGCGATGGAATCGCCGCGGCTATCGAGTCAGGGACCAAACGGGAGGATCTTTTTATCCAGACCAAGTTCACCCCAGTCTGGGCCCACGACAAGGACAAAATTCCTTTCAATCCAGATCAGAGCATCGAGGAGCAGATCAGAGAATCCATTCAGCAAAGTCTGAAGCATCTGCAAGTGGACTATTTTGACGCGCTGCTATTGCACATCTACTTCCAAGACGACAACGACAACCTCGTCGCGTGGAAAGTCTTCGAGTCCTTTGTCCCGCATACAATCCGATCTCTTGGAGTATCTAACTTCTCTCTGAAACAACTGAAACAACTCTACGAACATGCGGTCACGAAGCCCTCTTACTTGCAGAATCGGTTCTATAAGGACACCGGCTACGATATCGAAGTGCGCAAGTTCTGCAAAGATCATGAGATCACGTACCAAGCTTACTGGATGCTCTCACATAACCCTGAGATCATCGACTCGGATCTCCTAACGTCGGTAGCCGAGAGGCTGGATGTCGAGAAGCAACTCGCTTTCTACATCTTGATCCTGGGTCTCGGGAATACGCAGGTGCTGAACGGTACTACAAAGTCTGAG | |||||||||
gi|237614570|gb|GO890222.1|GO890222 RDD_cLiFpEfI12nb_1x1_1_C17_cLibkitLD5_B09 RDD_cLiFpEfI12nb_plant Festuca pratensis cDNA clon TTTGGATTGAAGGGAGCTCTG EST sequence (targeted fragment marked with yellow): AACCTTCGAGCGTCATGCATCTTCTGACATGGTATCGGGCTACAGTGACAGTCCCACCTGTGAACAATTTCCTTATGAGCCCGAGAGGACCTGTTACACTGATATCAACTTGGGAATAACAAACCACAGTGTTTGTTTTGATTGTGCCATTGCCAATGGCCTGCCAATATTAGATGGCAACTTCTCTACTTCCGGGACCATGCTGAGGCCCGTGAAGATGGAGCTCCCTTCACTCCAAAATACGAGCTTTGAATCAATCAATAGCTGTTTGCACATAGCCCCAGCAACTCCTCTTGATATGGCTGACACCTTTGTCCCTTCTCCAGCATCTGTCTTAATGAAATCAGACTGTTTCCCTTCCCAAAACATGGTTCAGCAGCAGGGACATATACCAGGGGATTCTGCAACATTCCAAGCAGCGTATGAAGTACCGGTTCCTCCTGTTCCGTATGTTCACCCTTTGAGTCCGCACTCTTCAGCCATTAATGACAGTGTCCTCGACAGCAGTCCTTTGGATGAATTTAGAACTTCGAAATCACCTACTAGCCTGGATGCTCTTTTGGCGGACAGCAAACATCAAGCAGATGATATATTTGCAGAAGAGTATCTTTCGCCCTTGCCAGATTCCTGCAGGCCTGGTGCATCAGCAGAAGCAAGATATTTGAGTGAAGATTCACCAAACTCGGAGTACCAGCCCATCAGCGATCCATATAGTGCAATGCTCTATGGAGATTTATGTGATGAGGGTATGTTCTCAGCTCCAGGTGCTG | |||||||||
gi|237619197|gb|GO887335.1|GO887335 RDD_cLiFpEfI12nb_11x1_1_M05_cLibkit5_G03 RDD_cLiFpEfI12nb_plant Festuca pratensis cDNA clone TTTGGATTGAAGGGAGCTCTG EST sequence (targeted fragment marked with yellow): AAAGTTTGTGATTGCGATTGCTATTGCGATTGCGACTTCCTTGTGTACCCTATTATTGTCGGCCTTACCGCGAGAAGGTCACTGAACTTCGACCATGGCAACAAAAGAGGCGCCACTTTTGCTTTATGGCACGGCCTGGAAAACCGACAAGACCGCGAGGCTCACCCAGGAAGCTGTGACCAACGGCTTCTCTGGCATAGATACGGCCAACTACCCAACAGCGTACGAGGAGCTACTAACAGGCGATGGAATCGCCGCGGCTATCGAGTCAGGGACCAAACGGGAGGATCTTTTTATCCAGACCAAGTTCACCCCAGTCTGGGCCCACGACAAGGACAAAATTCCTTTCAATCCAGATCAGAGCATCGAGGAACAGATCAGAGAATCCATTCAGCAAAGTCTGAAGCATCTGCAAGTGGACTATTTTGACGCGCTGCTATTGCACATCTACTTCCAAGACGACAACGACAACCTCGTCGCGTGGAAAGTCTTCGAGTCCTTTGTCCCACATACAATCCGATCTCTTGGAGTATCTAACTTCTCTCTGAAACAACTGAAACAACTCTACGAACATGCGGTCACGAAGCCCTCTTACTTGCAGAATCGGTTCTATAAGGACACCGGCTACGATATCGAAGTGCGCAAGTTCTGCAAAGATCATGAGATCACGTACCAAGCTTACTGGATGCTCTCACATAACCCTGAGATCATCGACTCGGATCTCCTAACGTCGGTAGCCGAGAGGCTGGATGCCGAGAAGCAACTCGCTTTCTACATCTTGATC | |||||||||