| mature miRNA: TGAAGCTGCCAGCATGATCTG species: Fragaria vesca database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|238017918|gb|GH203307.1|GH203307 MAN-VES-012_C02_T7_T01270 Suppression subtractive hybridization library SD Fragaria vesca cD TGAAGCTGCCAGCATGATCTG EST sequence (targeted fragment marked with yellow): TACCCAAGTTGAAATGCCACCTCTGATGGGCATTGAGTTCCTGTGCAGGGTGGCCGATGTCCTCACAGATTATCTTGGCAGCTTGAATGAAGACTTGATAAAAGATAACTTCGTCATCGTTTATGAGCTTCTGGATGAGATGATTGACAATGGCTTCCCTCTCACTACGGAACCTAATATTCTGAGAGAGATGATTGCTCCACCAAATCTTGTCAACAAGATGTTGAGTGTTGTGACAGGCAGCAGTTCTAACATGAGTGATACGCTTCCAGGTGCAACATCATCTCTGATTCCATGGAGAACAACAGATCCGAAATACGCTCACAATGAAGTTTATGTTGATCTTGTTGAAGAAATAGATACAATAATAAACAGGGATGGGGTCATGGTGAAATGTGAGATATATGGTGAAGTTCAAGTGAACTCCCATTTATCCGGTGTGCCTGATTTGACTCTTTCCTTTTCAAACCCTTCTATTCTTGATGATGTAAGATTCCATCCATGTGTTCGGTTTCGACCTTGGGAATCCCAGCAAATTCTGTCATTTGTGCCTCCTGACGGACAGTTTAAGCTTATGAGTTACAGGGTTAGAAAGTTGAAAAGTACCTGGCCCCGGGCGGGCGC | |||||||||
gi|158369017|gb|EX677402.1|EX677402 JS5B974JG Draught stressed Fragaria vesca (strain Hawaii-4) cDNA library Fragaria vesca cDNA TGAAGCTGCCAGCATGATCTG EST sequence (targeted fragment marked with yellow): TCGGTCTTAAGCTGCTCTGCAGCGGAGGAGCTCGGAGGAGTTCTCCGTCGTTCGGCCGTCTCCCGGCGTCCAACCGGTGGCTACAGCTTCGTCACGTCGTCCCCAACATGGCTGTGATGTTGGATTACGAAGAGGAGCTCCGGCGAGAGAGAAAAGAAGCAAAGGAAGAAAATCTGGGTTCGCCAGCGATCTTCAGATTTCGGCCACGACGACGAGCACGACTGGTATGGATAGCCTCATCTCGTCCTCCCCGACGTCGCTTTAGTATTGGATTTCCATGGGAAGCTGAGGAGAGAGAGATTCGAAGAAGAAGAAGCTTTTCTGGGTTCGTCGGTGATTTTTCGAATCCGGCCACGGCGGCGGGCATGGATGGTGCTGGTAGCTTCACCTCAACTTGGAGAACCTATCTATGTCTTTGGTTGTCCACGACGAGCTCTGAGGAGGGAGAATCGAAGAGTAGAAGTTCTGAGATTTTCCGGCGACCTCCGAGTCCAAAACGAAGTTTTTTTTTTTTTTTAAAGTCTGAAACGCTGATGTGGCGTGTCGCAATGCCGTGTCGGGGCCGGTCAACGTGTCCGAGACGTATCTGAAAAGTCAACTTTTTCGGACACATGTTTTGCCATGTCGGCGTGTCGGAGTGTCGGTCACTCCGAAGTGGAGTGTCCGTGCAACATAGACTCTTGATACAAAACAAGTAAATGGAAATCTATAAGTAGAACTTTAGCCAGATATCTCGTTCCTTCAAACTATAGTCAGATCACTTGAATGTGAAATTGAAGGTGTTTCTTTTACTTTATTTCAAACTATAGTCAGATAGCTCATTCCTTCAAATTGTAGTCCTCTATG | |||||||||
gi|158358913|gb|EX667300.1|EX667300 JS3AM31JG Heat stressed Fragaria vesca (strain Hawaii-4) cDNA library Fragaria vesca cDNA cl TGAAGCTGCCAGCATGATCTG EST sequence (targeted fragment marked with yellow): CTGAAAGAGAATCGGAGGAGAGAAGGCGACTGCCTCTTCGATCGGGTTTCCGATTCTTGTCACGGTGGCGAGCGTGACTGGTATGGATAACTTAGTCTCGTCGTCCCCATCCTCCATGTGATCTTACTTTCAGCAAAGGAGCTCCGGTGAAGGAGAATCGAGCAGAAGGAGAGACTGGGTTCGCCGGCGAGTTCTCGATCCCGGCCACGGTGGCGGACATGGATGATGCTGGTGGCTTCGTCTTGGTCTCGTCGACGTCATTGTGCGTTCAGCTTGCAGAGATGAGGTCCGGTGAGAGAGAATCAAAGGGAGGAAGATTTGAGTTTCTCGGCGTTGTTCTTCGTTTTTCGGCGACGATTGATTTCGATCAAGGTATGAAACTTGGTCCATTTGTCAAGCTCTACCTGTTTATATGCTTGAAATTGAGTTTGGTAGTGTTTGGGAGAATTTGGATTTTGGCAGGGAGTGACCACTGTGAGTTCCACTGTGCACGGCGGGTCTGCGGCGACGGCGATCGTGTTTTGGTATTTGTTTGGTAATTTCCAATTGAATGAAACTACAGGACATGATTTTGATATTGTTATGCTTGGATTTTAGTTTTGTTAAGGAATGAAGAATCTGACTTTTGGCAGTGAGTTTAGTTTGTTGTTCATGGTGATGAAATTGTGTTTAGCTACTTAGTTTCAACCTTGATATGAAGATTTGAGCATGATATTGATTATGTGATGCATTGGAATTAGATGAATTGGAGAAGATTGTGTTGTGTTGTTTGGAATGAAGAGCAATAGTGTTCTTGTATTCATTGTTGGATTCATACTTGAGATTAAGTTGATTTGAGTGCTTGGATTCCAGAAATTGGAAAGTTGGGGTGCTCTTTGTGTTCTGTTAGTATGAAGCAGCAGT | |||||||||
gi|89552430|gb|DY672748.1|DY672748 STRCH47JX cold-stressed Fragaria vesca seedlings cDNA library Fragaria vesca cDNA clone STRCH TGAAGCTGCCAGCATGATCTG EST sequence (targeted fragment marked with yellow): CTCGAGCTGCTTTGCAGCGGTGGAGCTACGATTCCTCCTCCGTCGAGCGGCCGCCTCCCGGCACAAGACCGGTGTCCACAGGTCCGTCTCGACGTCCCTGACCTCACTATGTTCTTCGTGTTCGAAGAGGAGTTCCGGCGAGAGAGAAAAGAAGGACAGAAGGAATTTTGGGTTCGCTGGTGAGATTCCGATACCGGCGACGGCGGCGAGTGTGGATCGTACTAGAAGCTTCCTCTCGTCCTCGTGATCGTCCTCAGTTTCTTCAGAAGAGGTCGGGAGAGAGAGATTTGAAGTGGAGAAGGAGAGGCTGGGTTCGCCGGCGAGTTTCCGAATCCGGCCTCGGCGGCGGGCATGGATGTTGCTGGTAGCTTCACCTCGACTTGGAGAACCTCTCTATGTCTTTGGTTGTCCACGACGAGCTCTGAGGAGGGAGAATTGAAGAGGAGAAGCTTTTAGGGTTTTTCGGCCGTGTTCTTCGTTTTCCGGCGAGCTTCTGGTTTCGATTCAGGTTTCAATCTTCATCTACTCATCGAGCTCTTCCTGTTTATATAATTGGAATTGAGATTGGTTGGGTGTTGGAGAAGTTGGGTTTTGACAGTGGAGGACCGCCGTGTGTGCTACTGTGCACGGCGGCGGCGGTTGTTGTGGAAGTTGATTTCTGGCTTTATGAGTATATTGAATTGGTTTGAGTTATTGTGGAGGCTTGAATTCAATATTGGGTGTGTTTTGGAGAAATTGAGATTTAGTCTGAGGGTTGACCGCCGTGAGTGCCCTAAACTGAATCATT | |||||||||
gi|158357868|gb|EX666257.1|EX666257 JS3A992JG Heat stressed Fragaria vesca (strain Hawaii-4) cDNA library Fragaria vesca cDNA cl TGAAGCTGCCAGCATGATCTG EST sequence (targeted fragment marked with yellow): CCACTACCTCTAGCTGCCTTTGTAAGTGTTACCATTACATACAAGATAGACAGAGCATCGGAACGTTTCCTCAGTTTGGCTGGCCCCACCTTGGAGTGCCTTGCAGCCGGTTGTCCATGGCCTTGTATGCCAATTGTGGCATCTCTGTGGACTCAAAAGGCGAAGAGATGGAGTGACTTCCTTATCTTTTCTGCATCTCGGACCGTTTTCCTGCAGAACAGGCAGTCAGTGGTTCAGCTTCTTAAAAGCTGCTTTACTGCCACACTTGGCCTGAATGCCACTCCGACCTCGAGCAATGGTGGTGTGGGAGCACTTCTTGGACATGGATTCGGATCCCATTTCTGTGGTGAAATTTCACCTGTGGCACCAGGAATTCTTTATCTGCGTGTGTATAGGTCCATAGCAGATATTGTCTTCATGACCGAAGAGATTGTTACTATCTTGATGCATTCTGTGCGAGAGATAGCATGTGATGTGCTTCCTAAAGAGAGATTGGGCAAGTCAAAGACCAAAAATGGAATGAGATATGGACAGGTTTCACTTGCTACAGCAATGACTCAGGTGAAACTGGCAGCTTCACTTGGGGCGTCTTTAGTATGGTTAACAGGAGGCTTGTGTCTTGTTCAGTCGTTGATCAAAGAAACATTGCCTTCTTGGTTTATATCTATGCACTGGTCTGAGCAAGAACAAGGGTCAGAAGGAATGGTAGCCATGCTTGGGGGATATGCACTTGCATACTTTGCAGTGCTTTGTGGAGCCTTTGCTTGGGGAGTTGATTCATCATCGGCAGCATCAAAACGGCGGCCTAAAATCCTTGGTACACATA | |||||||||
gi|158366297|gb|EX674682.1|EX674682 JS5A481JG Draught stressed Fragaria vesca (strain Hawaii-4) cDNA library Fragaria vesca cDNA TGAAGCTGCCAGCATGATCTG EST sequence (targeted fragment marked with yellow): GCCCACCCGAACGCCAGCGACGGGTCGACCCGGCTGCCGCTCCCTCCTCCGGCGATGGCTTTGTCTCGACGTCCTGGTCTTCTCCATGATATTTATTTTCAGAGATGAAATCCGGTGAAGAAGAATCGAAGAAGAAGAAGAAGAAAGGTTGGGTTCGCCGGCCAACTTTGGATTCCGGCCGCGACGGCGGGCATGGATGGTGTTGGTAGCTTCACCTCGACTTGGTGAACCTCTCTATGTCCTTGGTTGTCCAAGACGAGCTCTGAGGAGGGAGATTCGAAGGGTTGAAGTTTCTGAGTTTTCCGGCGTGGGTTCGACGGATTCCGGTGAAGCTTGATGTCGACTCAGGTATTAAAGTTGGTCTATTCGATGAGCTTTACATGTTTCTATAATTGGAATTGAGTTTTGTTGAGAGATGGAGGATTTGGATTCTGGGCAGTGTTGACTGCCGTGGCTACCACTGTTCACGGCGACGGCGGTAGTTGTGGTTATGATTTCTGGGTCTGGGTTCCTGTATTGAGCATGTATACATGATTTGAAGTCCTTGAATGTCAGAAAATTTGCATGAGATTTGGGTGATAGGAAAT | |||||||||