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mature miRNA: CATTAAATATTTCATCTTAAT
species: Fraxinus excelsior
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|306764873|gb|FR637769.1|FR637769 FR637769 WZ0AFEAA Fraxinus excelsior cDNA clone WZ0AFEAA1YJ08CM1, mRNA sequence

CATTAAATATTTCATCTTAAT
|||||||||||| ||||| .
GTAATTTATAAAACAGAATAG

EST sequence (targeted fragment marked with yellow):
TTAGAAGAAAACTAGAGACTGTATGTTCCAGCATATTGATTGAACCTGAAAAAGCTCTACGAAAACTCCCAAGAGTTCAACATCTTTATGCTCGATTGACAGGGACATTAGAGAGAGAAGATTATGAGTTTAAGATTTTGTCGTCCCTTCATCCAACTCCAGCTGTTTGCGGGTTTCCTGCTAAAGAGGCACAGGTTTTAATAGCCGAAACTGAAATGTTTGACAGAGGATTATATGCTGGTCCTGTTGGATGGTTTGGTTGTGGGGAAAGTGAGTTTGCAGTGGGAATAAGGTCAGCCTTGGTTGGCAAGGGTTTTGGTGCATTGATCTATGCGGGAACTGGTATAGTGGAAGGAAGTAATTCTGCCCTGGAGTGGCGGGAGCTGGAGCTGAAGACATCACAGTTGCGGATCGCTAAGGATAAGACAAAATATTTAATGGAGAGCAGATATGCCAAATGCTGATAAAGAAAGAAAGAAGGGTCAACTGAAATTTATATTTAGTCAATTGTGAAGAAAATAAGCTGTCGTTTTGTTTTGTTTTTTTTTTTAATTTTAGATGGCTGGTTTCTATTGTCTATTAACAATTAGTTATAGATTCATATA