| mature miRNA: ATCAAAACATGACACGTGAAA species: Glycine max database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|254336967|gb|GR843146.1|GR843146 CCCC12963.g1 CCCC Glycine max callus grown in dark condition Glycine max cDNA clone CCCC1296 ATCAAAACATGACAC-GTGAAA EST sequence (targeted fragment marked with yellow): GGATAAAGTTGAAGCATTAAAGAAGAAAAACGGTTATTGGAATTGTCAATTGCTGAAGTCAGGGCTGAAAATTCTTAAGCTTGGAGGCGAGATAGAAGAAATAAATAATACTCATGCTGAGTTGACCAAGGAACTCCAGTCAGTCCAGGCACAACTTGTGGCTGAGAGATCAAGATGCTTTAACTTGGAGGCCAAAATTGCAGAACTCCAGAAGTTGCTGGAATCAATGCAGTCTGTGGAAGATGAAGTACAGGCTCTTCGTGAAAAGAAATCTGCTCTGGACCAGGAGATGGAGCTCGCTGCAACAGCTGAGAGGAAAAGTTCTGGTTGGCGATGGTTTGGTGGGAGTGAAACATGATAAATATGTGGCCATGAGGGCAAATGTCAACTAAGAGTGATTTAGAGTTGAGTCTGAGGAACCTCAACTGCTTATATTCTATTACTGTAGTTCATGCAGAAAATGAAATTTCCTTATTACCGAACTTTTACGGTGTCATCTTTTGATTTGAAATGCATGATGGACTCCAATTTTGAAGAACTGAAGTTTGAAACTTTCAAGAGATGGGGAACACAAGTTTTTTTTTTTTTTTTTGTATCGTTAATTTGTACCTTGACAGGTTTACAGTTTACTTTTGACTGATTCATTTCATGCTCAAGTGTCCATTAAATTCTATAGGATATACATTTCATTTTATTCATTTGAGTATATATTGGCATCT | |||||||||
gi|208131046|gb|GD932501.1|GD932501 454GmaGlobSeed675150 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA ATCAAAACATGACACGTGAAA EST sequence (targeted fragment marked with yellow): AATTTTAAATTTGGTCTCCACTAATTTAATTTATAAATTTAGTTTTTTTATTTTATAAAATCGTGTAACTTTAGGTTATAACTAAATGTTCTATAAATTTAGTTTTTTATTTTATAAAATCATGTAACTCTAGGTTATAACTAAATGTTGATTGTTAGTGAGTGATGTTAACTGTTACATGTCATATTTTTATTGGATAATGACGGTCACGTGTCATGTTCTGATTAGATGTCAACTCCATAAAAGATGAAATACATTGTTATTTTCATTGACCAATTAGAATATGACA | |||||||||
gi|58023768|gb|CX710509.1|CX710509 gmrtDrNS01_20-D_M13R_D01_009.s1 Water stressed 5h segment 1 gmrtDrNS01 Glycine max cDNA 3', m ATCAAAACATGACACGTGAAA EST sequence (targeted fragment marked with yellow): GAAAGAAAGTGAAGATTTTATGAGCTACATATGGAGAATCAAATGGGGGCAAGAAGACCCAATTTGGGGTTTCTACTCAAATCCTAGTGTTTGTAGAGGTTCTGGCGAATTAACTGTGAGATCTAACGCTGTTATAATGGAAGCACAGAGTATGCAATATGAAACACAAGTTAGGAGATTAGATTGAACTGAAAAAAGTTAAGGACGAAATTAAAACCAATCTTTAATTTAGAGGAGAAAAATACTAATTTTGCCTTTTAAATTTTTCTATAGTGTGTTGGTGCACTATATGATTAGCTTGGGTTGTTTGTAGGTTGTAAACAGAAAAATGTTTGATGCGAGGAACTTGGGGTTCATGTTTTTACCTTCTATATTTTACACAACTTCATTAGAGCAACAAAAATTTTGACACCTGTTTGAATTTATACTCCTATCAATTTCATATAATAAGTATGTTTGTAATTGAGCTTGAATATTACTTCTATGGCAGGTGATGCCTTGGCTGTATTGAAGAATAGTATGAGTGACCCTAACAATGTTCTTCAAAGTTGGAATTGTACCCTTGTCACTCCTTGCACATGGTTTCATGTTAATTGCAACAGTGAAAATAGCGTGACCCGTGTGTAAGATATTGCTTCGCTGCTATTTTTACTTGTCATGTTATGAAAGTTTGTGCATATTGTGAAAAATAATTTTTGTTGGCTAGTGATCTTGGAAATGCAAACCTTTCGGGTCATCTTGTTCCACAGCTTGGTCAGCTCCTAATTTTGGAATGCTTGTAAGTTACAAAACAGATATGACATTATTGGCTCAAATATGCTTAATTTTACTAGT | |||||||||
gi|192302684|gb|FG993704.1|FG993704 GLLE965TF JCVI-SOY1 Glycine max cDNA 5', mRNA sequence ATCAAAACATGACACGTGAAA EST sequence (targeted fragment marked with yellow): GGAACCACCGATTTTCAAGGAGGATTGGGTTCGACCCGATGGCCGCGGTTTTCACCAGTGCAGACCCGCGTTTTTCAGGACTGGTGCTGTGAATGCTGCATCTGGATCTGCTTACGCTGAGTTTGGAAATACCAAGGTCATTGTATCAGTATTTGGGCCAAGAGAGAGCAAGAAGGCGATGATGTACAGTGATATAGAGCGTTTGAATTGCAATGTCAGCTTTACAACGTTTGCAACTCCGATTCGTGGGCAGGGTTCAGACCACAAAGAGTACTGTGCGATGCTTCATAAAGCTTTGGAGGGTGCAATAATACTGGAAACATTCCCCAAGACAACTGTGGACGTTTTTGCATTGGTGCTGGAATCTAGCGGCAGTGATCTCCCAGTTGTCATATCATGTGCTAGCCTTGCCCTTGCAGATGCTGGAATAATGATGTATGATATAGTTGCCTCAGTTTCTGTGTCATGTTTTAATAAGAACCTTGTCATTGATCCTATTTTGGAGGAGGAAATTGGCCAAGATGGCAGCTTAATGATTACTTGCATGCCTTCTCGCTATGAAATCACCCAACTCACCGTTACTGGGGAATGGTCCACCACAAAGATTAATGAGGGAATGCAGCTGTGTTTGGATGCTTGTGCAAAGCTTGCGAAGATTATGAGTCATGTTTAAAAGAAGTTGCTTCGGATTCCAGGAGTAGAATGACAGTTCTAAATTAACACAGATCGCCTTATGTGCTGTTGTGTTGG | |||||||||
gi|207682424|gb|GD664809.1|GD664809 454GmaGlobSeed407458 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA ATCAAAACATGACACGTGAAA EST sequence (targeted fragment marked with yellow): TCTATATGTTGTTGTAAGATATGGTAGTTCCAGATTCATTTTACTGTGTTTAGTTTATTCTGTCAAAGTGATGGTTTTCGTTATGGCTGTTCCCAGGGGATGATTTCCCCTATCATAGCGGGTGTTATGTATATAATATTTAAAATCTCAAATTTCTTGTGTCATGTTTAGAAATTCCAAATTTCTTCCTCGTTTCCCTTCTAG | |||||||||
gi|192307494|gb|FK002026.1|FK002026 GLPAP90TF JCVI-SOY1 Glycine max cDNA 5', mRNA sequence ATCAAAACATGACACGTGAAA EST sequence (targeted fragment marked with yellow): TGGCTCGACCTGATGGCCGCAGTTTCCACCAGTGCGGACCCCCATTTTTCAGGACTGGTGCTGTGAATGCTGCATCTGGATCTGCTTATGCTGAGGTTGGAAATACCAAGGTCATTGTATCAGTATTTGGGCCAAGAGAGAGCAAGAAGGCGATGATGTACAGTGATATAGGGCGTTTGAATTGCAATGTCAGCTTTACAACGTTTGCAACTCCGATTCGTGGGCAGGGTTCAGACCACAAAGAGTACAGTTCAATGCTTCATAAAGCTTTGGAGGGAGCAATAATACTGGAAACATTCCCCAAGACAACTGTGGATGTCTTTGCATTGGTGCTGGAATCTAGTGGCAGTGATCTCCCAGTTGTCATATCATGTGCAAGCCTTGCCCTTGCAGATGCGGGAATAATGATGTATGATCTTGTTGCCTCAGTTTCTGTGTCATGTTTTAATAAGAACCTTGTCATTGATCCTGTTTTGGAGGAGGAAAATGGCCAAGATGGAAGCTTAATGATTACTTGCATGCCTTCTCGCTATGAAATCACCCAACTCACTGTTACTGGGGAATGGTCCACCCCAAAGATTAACGAGGGAATGCAGCTGTGTTTGG | |||||||||
gi|193340502|gb|FK305841.1|FK305841 454GmaGlobSeed40473 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA s ATCAAAACATGACACGTGAAA EST sequence (targeted fragment marked with yellow): AGTTTATTCTGTCAAAGTGATGGTTTTCGTTATGGCTGTTCCCAGGGGATGATTTCCCCTATCATAGCGGGTGTTATGTATATAATATTTAAAAATCTCAAATTTCTTGTGTCATGTTTAGAAATTCCAAATTTCTTCCGC | |||||||||