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mature miRNA: GGTGTGGCATCATCAAGATGC
species: Glycine max
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|209727063|gb|BW675415.1|BW675415 BW675415 GMFL01 Glycine max cDNA clone GMFL01-39-C13 5', mRNA sequence

GGTGTGGCATCATCAAGATGC
||||.||||||| ||||||
GCACATCGTAGTATTTCTACT

EST sequence (targeted fragment marked with yellow):
GAGAAGCAAGCTAGCTCAATATTACATCGAGCAAAAAGTCTCTCTCTCTCTCTCTCTCTACTTTTGAACCAAGCACTCACGAGACACACTTGAGGCTTCACCCTTTGAATTCATCTTTATGATGCTACACGACCTAATCCTCCTGACCCGTCCTATTTGGAGAAACAAACCGTGAAAACTACTCCTTCTCTTCTCTTTTACAATTTTCATCTTCATGAACGTTCCCTGCAATTAGTTCCAATAACTTCTAAGTGTTTTAAAAAAATTTCACCCTTCTCAGCTTTGAATTGATAAACCAAGTGTGACAATTGCTTGACATGAACACATCTTTCTTTTCTTCCCATACAAGCCAAAAGGGTCTTTTCTGAATTCTATCGTAGATGAATCATATTGACACATATTCTTCTTCTTCATTTTTTGTTGGAGCCTATGTTTCGGAATCCGTTTATGCACTTCCTGAAATCCGTTCACACGTTCAGAAGAAAATCTCCTTTTGACAGTCACTGCATATATATCATTAATTGTTTGAG