| mature miRNA: TGCCAAAGGAGATTTGCCCAG species: Glycine max database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|192301681|gb|FG994389.1|FG994389 GLLED62TF JCVI-SOY1 Glycine max cDNA 5', mRNA sequence TGCCAAAGGAGATTTGCCCAG EST sequence (targeted fragment marked with yellow): GGAGTGTGTAACCAATTCTTCTCTTTTGCTTTCTCTCTCCAAATTCATCACAACTTCTCTCGTACCTCTGCAGAGAAGTAAACATATAGGAGTGAGAGGGAGGGAGAGAGAAGGAAAGCTTGGTAGCGATGGGGAAGGAGCAAGTTCAGGTGCTGAATGCCCTGGACGTGGCAAAGACACAATGGTATCATTTCACAGCAATCATCATTGCTGGAATGGGCTTCTTCACTGATGCTTATGATCTGTTCTGTATATCACTAGTCACAAAGCTACTTGGTCGCATTTACTACCACGTTGATGGGGCTGCAAAGCCTGGTTCATTGCCTCCCAATGTGTCAGCTGCAGTTAATGGTGTAGCTTTTGTTGGAACACTTTCAGGGCAACTCTTCTTTGGCTGGCTCGGCGACAAAATGGGCCGAAAAAAGGTCTATGGCATGACCCTTGCGCTTATGGTTATAGCTTCCATTGCTTCGGGTCTATCCTTCGGACACGATGCAAAGACTGTGATGACAACTCTATGCTTCTTTCGCTTCTGGCTTGGTTTTGGCATTGGTGGAGACTACCCTCTTTCGGCCACCATAATGTCTGAGTATTCTAATATGAAGACTCGAGGTGCCTTTATAGCTGCAGTGTTTGCCATGCAGGGTTTTGGAATTTTG | |||||||||
gi|151408325|gb|EV278133.1|EV278133 GLNA330TF JCVI-SOY3 Glycine max cDNA 5', mRNA sequence TGCCAAAGGAGATTTGCCCAG EST sequence (targeted fragment marked with yellow): TTTTGGAAGTGTAACCCCTCAATATTGGAAAATGAAGCTTCATCTATTTCAGATATCTATTTTATGATTTGAAGATTCAGCTGTACTGGGCAAATCTTCTTTGGCAAAAGTTACTTAATTTTCC | |||||||||
gi|208051310|gb|GD847149.1|GD847149 454GmaGlobSeed589798 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA TGCCAAAGGAGATTTGCCCAG EST sequence (targeted fragment marked with yellow): CAAATGAAGGAACTCCACCCTTTCTTGGGGGCAAATCTCCTTTGGCATCTTTTGCTTATCTTGGTCTGTTTCCTCCAATAGCTAGAATTTTTTTTCTTTCTGTAAACCACC | |||||||||
gi|213611753|gb|DB960653.1|DB960653 DB960653 full-length enriched soybean cDNA library, mixture of seedling, young plant, adult TGCCAAAGGAGATTTGCCCAG EST sequence (targeted fragment marked with yellow): GGACAAAGTAGCAAAGGTGTAGACACAGTTTATAGGGAGCAAGGGAGTGAGTGATCAGAGGGACTTGTGTTCATTAGTAAGTAAGCAAATCATTCATAGGGCATGTCTCTTTTGGCAGGTAATGGTGATTACTTTGGATTAATTCAGAGCTACCAAAATATGTCTCATAAATAGTAATCAACTTGCCAAAGGAGAGCTGCCCTGTGAGTGTTTGACTTAAACATTTGTTTCCTTTGCCCCTGCATGCAGTGCAACTACATACTGAAAAAGGTAATGTAGTGTAAGTGAGCTTAATTTGCAAATAATTCGTTATCAGCTTGATAGAAATATTTTTGTTTTTTGTGGGCAGGTTGATAGAAATTTAGGTAGAAATTAAAGACAAAATCACTTGACTTCCCAATGAATTTTTTTATTAATAGAAAACACTACATTATAAGATTATCAAATTTAGGTAGAAAGAAATGATGATTTTATAATGTAATGTTTGCATTAATATTTTGTTGGGAAGTCAAGTGAATTTGTCTTTAATTTTCTTTTGAGTCCAAACTTGTTTGCATAGAAAAATCACTACTTTTAGTTATCAATACTTGAC | |||||||||
gi|192323389|gb|FK017435.1|FK017435 GLNCN40TF JCVI-SOY3 Glycine max cDNA 5', mRNA sequence TGCCAAAGGAGATTTGCCCAG EST sequence (targeted fragment marked with yellow): GGACACTAACACTACAAGTTCCCATCTTCACCACGAAGCATTCTTAGCATTCTACAGAGAGAAAAGTGACACTCTACAATGGTTCCAAAGCTTAGTGGTGACGTGGATGATGGTGGAACTGGGCTTGAAACTAAGCCTATCTGAACAATACCCTCCTCTTCCTTCTTCTATTAAGGTTGAAGTTCTTAGATAAGAAGAAGAAGAGAGCATAAGATAGCCTTTTGAAGCTGAAAGCAAATTTTGTGAAGTAGCATATATACTTTCAATTTGTTTAGTTCTTCTGGGTGGAGTTCCTTCATTTGGTGTTTGTAGTCATGGAGGTTTCTTGGTTCTATACCTTTTGCAGCTTTTTATGGATCCAACCATCCCAAATGTGCCAATGGTTCAAAAGAAATGATATGATAACAGAAGCTCATCTCCTTTGTTACCAGATTGACCTGATTGAGTGTTAGACTTATTTGTAGAGGCAGATCTCCTTTGGAAGTGTAACCCTCAATATTGGAAAATGAAGCTTCATCTATTTCAGATATCTATTTATGATTGAAGATTCAGCTGTACTGGGCAAATCTTCTTTGGCAAAAGTTACTTAATTTTCCTTTGGTTGGATACTTGGATTCCAAGTAGTAAAAATATATCAACATTATTTTTTGCCTTCTTAAAATATTACCATTCAGAGATAATTTCTCTAGGAACTCCACCCTTTCTTGGGGGGCAAATCTCCTTTGGCATCTTTTGCTTATCTTGGTCTGTTTCCTCCATAGCCAGAATTTTTTCTTTCTGTAAACCACC | |||||||||
gi|192323389|gb|FK017435.1|FK017435 GLNCN40TF JCVI-SOY3 Glycine max cDNA 5', mRNA sequence TGCCAAAGGAGATTTGCCCAG EST sequence (targeted fragment marked with yellow): GGACACTAACACTACAAGTTCCCATCTTCACCACGAAGCATTCTTAGCATTCTACAGAGAGAAAAGTGACACTCTACAATGGTTCCAAAGCTTAGTGGTGACGTGGATGATGGTGGAACTGGGCTTGAAACTAAGCCTATCTGAACAATACCCTCCTCTTCCTTCTTCTATTAAGGTTGAAGTTCTTAGATAAGAAGAAGAAGAGAGCATAAGATAGCCTTTTGAAGCTGAAAGCAAATTTTGTGAAGTAGCATATATACTTTCAATTTGTTTAGTTCTTCTGGGTGGAGTTCCTTCATTTGGTGTTTGTAGTCATGGAGGTTTCTTGGTTCTATACCTTTTGCAGCTTTTTATGGATCCAACCATCCCAAATGTGCCAATGGTTCAAAAGAAATGATATGATAACAGAAGCTCATCTCCTTTGTTACCAGATTGACCTGATTGAGTGTTAGACTTATTTGTAGAGGCAGATCTCCTTTGGAAGTGTAACCCTCAATATTGGAAAATGAAGCTTCATCTATTTCAGATATCTATTTATGATTGAAGATTCAGCTGTACTGGGCAAATCTTCTTTGGCAAAAGTTACTTAATTTTCCTTTGGTTGGATACTTGGATTCCAAGTAGTAAAAATATATCAACATTATTTTTTGCCTTCTTAAAATATTACCATTCAGAGATAATTTCTCTAGGAACTCCACCCTTTCTTGGGGGGCAAATCTCCTTTGGCATCTTTTGCTTATCTTGGTCTGTTTCCTCCATAGCCAGAATTTTTTCTTTCTGTAAACCACC | |||||||||
gi|213590302|gb|DB970114.1|DB970114 DB970114 full-length enriched soybean cDNA library, mixture of seedling, young plant, adult TGCCAAAGGAGATTTGCCCAG EST sequence (targeted fragment marked with yellow): GACACTAACACAACAAGTTCCCATCTTCACCAAAGCCTTAGCATTCTACAGAGAGAAATAGTGTCACTCTGCAATGGTTCCAAAGCTTGGTGGTGACGTGGAGGATGGTGGAACTGGGCGTGGAACTAAGCCTATCTGAAAATTCCCACCTCTTCCTTCTTCTAATAAGGTTGAAGTTCTTAGCTAAAAAAAAAGAAGAGAGCATAAGATAGCTTTTTGAAGCTGAAATCAAATTTTGTGAAGTAGCAAATACTTTCAGTTTGTTTAGTTCTTCTGGGTGTAGTTCCTTCATTTTCTGTTTATAGTCATGGAGGTTTATTGGTTCTATACCTTTTATAGCTTTTTATGGATCCAACCACCTCAAATGTGCAAATGGTTCAAAAGAAATGATATGGTAACAGAAGCTCATCTCCCTTGTTACCTGATAGTGATAGAGTGCTAGACTTAATCGTAGAGGCAGATGTCCTTTGGCAGTGTAACCCTCAATCTTTGAACAGGAAACTTCATCTATTTCAGATATCTCTTTATGATTGAAGATTCAGCTGTACTGGGCAAATCTTCTTTGGCAAAAGTTACTTAATTTCTTTTGGTTGG | |||||||||
gi|151411183|gb|EV280994.1|EV280994 GLNAZ77TF JCVI-SOY3 Glycine max cDNA 5', mRNA sequence TGCCAAAGGAGATTTGCCCAG EST sequence (targeted fragment marked with yellow): GGAACACTACAAGTTCCCATCTTCACCACGAAGCATTCTTAGCATTCTACAGAGAGAAAAGTGACACTCTACAATGGTTCCAAAGCTTAGTGGTGACGTGGATGATGGTGGAACTGGGCTTGAAACTAAGCCTATCTGAACAATACCCTCCTCTTCCTTCTTCTATTAAGGTTGAAGTTCTTAGATAAGAAGAAGAAGAGAGCATAAGATAGCCTTTTGAAGCTGAAAGCAAATTTTGTGAAGTAGCATATATACTTTCAATTTGTTTAGTTCTTCTGGGTGGAGTTCCTTCATTTGGTGTTTGTAGTCATGGAGGTTTCTTGGTTCTATACCTTTTGCAGCTTTTTATGGATCCAACCATCCCAAATGTGCCAATGGTTCAAAAGAAATGATATGATAACAGAAGCTCATCTCCTTTGTTACCAGATTGACCTGATTGAGTGTTAGACTTATTTGTAGAGGCAGATCTCCTTTGGAAGTGTAACCCTCAATATTGGAAAATGAAGCTTCATCTATTTCAGATATCTATTTATGATTGAAGATTCAGCTGTACCGGGCAAATCTTCTTTGGCAAAAGTTACTTAATTTTCCTTTGGTTGGATACTTGGATTCCAAGTAGTAAAAATATATCAACATTATTTTTTTGCCTTCTTAAAATATTACCATTCAGAGATAATTTCTCTAGGAACTCCACCCTTTCTTGGGGGGCAAATCTCCTTTGGCATCTTTTGCTTATCTTGGTCTGTTTCCTCCAATAGCCAGAATTTTTTTCTTTCTGTAAACCACC | |||||||||
gi|192316093|gb|FK008904.1|FK008904 GLQA092TR JCVI-SOY2 Glycine max cDNA 5', mRNA sequence TGCCAAAGGAGATTTGCCCAG EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTTGGACACGTTGAATAATTATAGATCGTATTTACAACTTCATTTTTTTCTTCACCTTATTTTTCAGTGACTTCTTGTTTTGCTTACACTCTTGCTTCTTTGGTTGAACCTACCAAAACTATAACGGGTTTTTTCATGAGTAATAGATGGGTTTAGTGAAACTAATGGCTCAAAATCTCTTTTGGACAAACTCAAATCACCTTTATGTAACTTCTTCAACTGCTCACCACCATTTTGGGAACCTGGTGTAACTTCACAAGCTAACTCCATAGGGCTCTCTGAATCAAGTAAAAAGTCTTCCAATGTTGCAAGGGACTTCAACTGCAGTCCAAGAAATTCGATGGTTTTTCGGCATTCAGCAAATTTACTTGTAGCCAATGCTAGTTCCTTCTCCTGAGACAGCTTCTTCCGCAACTTTAGCATGCTGCTTTGCCAAATCTTCTTTGGCACTAGAGTTTAAAAGAGCAGC | |||||||||
gi|151393378|gb|EV263253.1|EV263253 GLLA441TF JCVI-SOY1 Glycine max cDNA 5', mRNA sequence TGCCAAAGGAGATTTGCCCAG EST sequence (targeted fragment marked with yellow): ATCCCAAATGTGCCAATGGTTCAAAAGAAATGATATGATAACAGAAGCTCATCTCCTTTGTTACCAGATTGACCTGATTGAGTGTTAGACTTATTTGTAGAGGCAGATCTCCTTTGGAAGTGTAACCCTCAATATTGGAAAATGAAGCTTCATCTATTTCAGATATCTATTTATGATTGAAGATTCGGCTGTACTGGGCAAATCTTCTTTGGCAAAAGTTACTTAATTTTCCTTTGGTTGGATACTTGGATTCCAAGTAGT | |||||||||
gi|120490917|gb|EH219084.1|EH219084 JGI_ABWZ425.rev ABWZ Phakopsora pachyrhizi infected soybean leaf tissue 13-15 days post inoc TGCCAAAGGAGATTTGCCCAG EST sequence (targeted fragment marked with yellow): TTCAAGAACAACGCAGGTTTCCCCCCCAACGTTGTTTTCGACGAGGACGAGATTCCTAGCGGGGTGGATGCGGGGAAAATCTCCTTGGGCGATGAAGCCCTTCTCAATGCCCCTGGTGAGACTTACAGCGTTACTTTGGATGCTAAGGGAACCTCCAGTTTTTTTTGTTCGCCTCCCCAAGGAGCTGGTATGGTGGGAAAAGTCCCTGTTAATTAATTTTTGTCTCAAGGGCTCGTCTCCTACGTCTAAGTTCTCATAGGGTCCCTTCTTCTAATATTTTTGTTTTTTCTAGAAGAGCTTGGTTGATCTTTCTTGTCATGGCCTATGGGATGAATGAACGATATAAGGCGTTTCTGTAATTCATTTACTTCTTTCAGACCCTTGAGGAAGTCTTATTTCGATTAATAAATAAGCTAATGCA | |||||||||
gi|207697827|gb|GD679996.1|GD679996 454GmaGlobSeed422645 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA TGCCAAAGGAGATTTGCCCAG EST sequence (targeted fragment marked with yellow): TGTAATTGTAATCTCTTGAATTCAGTAGCTCGAATTTGATCAACGGACTTGGGGCCGTTAGGGTAGCCGTAGTGTTCACCAAAGTCTCTGAGAAATTCTTCTTTGGCAGCGTCCATGTTCAACGTTCGGAGTTCCAGAGGCGGCAAATGGAGTAGCGAACAAGAGCTGTTACGTGCAGAAACGTTTCTTCCATC | |||||||||