| mature miRNA: AAGACTCAAGAGAATTGGGTT species: Gossypium hirsutum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|78347303|gb|DT567577.1|DT567577 EST1078217 GH_TMO Gossypium hirsutum cDNA, mRNA sequence AAGACTCAAGAGAATTGGGTT EST sequence (targeted fragment marked with yellow): GTTTGATTTTATTGGGAACCAAAAGAAACAAATTTTACTTAAAAAATCTAAAGACGAGAGAAAATGGAGAGGGTAAAGGAATCGGAATCGGAGCCGGCGTCGTCGTCGTCGTCGTCGGCGGGTAAATTGGAAGAAGAAGTAGGGAGGGTGATGGATCAAGCCAGGGAGTTGCACGAATCTGGAGCTTCGCTTTTATGGAAGATTTCAAACGAGGAGCAATCTCTTCGCCAAAAAGCCATTTCTCTTGAATCTTCTATTCGCCGTGTTCGTTCTTCAATCAATTCGCTTATATCTAAAAAGCTTTTGGATCCTGAGTTCGCTCGCAAGCTCGAAGAGGATTTACAGAGAGCCAGCTCCATCCTAACTGATGGAGAAGCCGCTGCTTTTCTTCCTGCCGAAGCTCAGGGAAGGTTTCTGAGGATGTTTCTGGGACCAATCAATGTGCGAGCATCTCGTAAAGAAGTCCAGTTGAAAGTTAAGGAGGAATATAACAGCTACAGAGATAGGACTGCCTTTCTGTTTCTTCTTTTCCCGTTAACTTTGCTTATTTTAAAATCTTGGATTTGGGAAGGATGCTTACCTGCATTTCCAGTTCAATTGTACGAGGCATGGTTGTTGTTCCTTTACACTGGTTTGGCTATGCGAGAGAACATATTGCGAGCAAATGGAAGTGATATTCGTCCATGGTGGATATACCATCACTATTGCGCTATGCTTATGGCCCTAGTTAGTCTCACTTGGGAGATCAAAAGACAGCCTAATTGTGCTCAGAAGCAGAGAGGTGTAGAACTTTTCCTTCAATGGGCTATGATGCAAGGAGTTGCCATGCTTCTTCAAATAGATATCAGCGTCAGAGACTTTATACTCGTATTGCCCTTGGAAAGCTATAGATGGAT | |||||||||
gi|109861202|gb|DW490179.1|DW490179 GH_RMIRS_079_B05_R Cotton Normalized Library random primed Gossypium hirsutum cDNA, mRNA seq AAGACTCAAGAGAATTGGGTT EST sequence (targeted fragment marked with yellow): ATCAGGCAGAGGACGAGACAATTGCAAGGTTCTTTAGGTCTTCTCTAAGACATTTTTTGATATTATTTGCTACCTCAGCTCCAAGCTGCCCACTGTGTTGCTTAATCGAATCCTCCGAAATTTCTGAAAGCAGTAATGCAGATGCTCTATCCAGGAGCTCTTCCACAAAATTCCCAGCATCCGCAGCAGGAATTGAAGGCTGCACAGTATTGACTGGCTTCTCCTTAACATTTTGCGTATTACCAGATGGCTTAACAGCTTTGGCTGCAACTGCTGCAGAATTACTAGCAGCACTAACATGTTTTCCGGTAGAATCTTGTGTAGGTGCTTTTACTGGAAGATCTGACAGAATTGGGGCATCTGATGGAACAAAAGCAGCTAGATCGGGAGGTTGGTCTTTCCCTACAGGAGGGTTAGCCTCCAGGTCAACGTATGATGGGTCTCTCCCAATCGATTTAAGAAACTTGTCCAGACCGTGGGCGTTAAGAGAGATTGACATGTCATTGGAAAGTGGGTGGAAAAAGCAATACTCTTGAGTTTTGAATCCTTGATCCAACAATAGTGAGACATGTCTTGCAGATTCATTTACCACGGCAAATGGAGTAACACATCCAAGTGGAACCTTAAGTATCTCAACCAGTGCCTCTTCTGCAGCCATTCTTAGACCACCTTTCCCTAAACCAAGCCTCTGAGATAAAACTTTCAAATCTACTTTTGTATCTGCAAGAGCAGAGACAACATAGTACCTATGTTTCTTGTCCTTCAAGAACAAATTTTTGCTCAATGCACCTCCC | |||||||||
gi|109884258|gb|DW513228.1|DW513228 GH_TMIRS_170_H02_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequenc AAGACTCAAGAGAATTGGGTT EST sequence (targeted fragment marked with yellow): GAAGACGGGGTTTAAAGACTCTGGGCATCAACATAAATATAGAAAATAGGAACTCTTCTTTTCTATGTGAATGTATAACGGGAAGTGGTGGGAACCAACTTCCTTATCTTTTTGCTCTTTTAAAGGCGTTTTCAACTTCAAACTGTAATCTTTTGTGCTTAAAAGACCATACTTTTTTCTTAACTCCAAATCTAAGCAAAGGCTGCTTCCTTTCTAACCCCTTTTTCTTGGGTTTTGTACCTTTAAAAAATGTGATATCAAGAGAAGCTTTCAGGTTCCCCTTCTTCTTTTTCTTATTCATTGGCAACTGTAGAAAATTGTTCTTTTTTTTCTTCTTCTGTTAAATATTTTTGTTGTCTTGATATGGGGAGAAGATTGAGTTTTTGATACCAATGCAATATATTTATGCAAAACCCATGTTAAATAATTAAATATTATGGTTTACACGGTTGAATTTTGTATAGATTGGTTGACAGGAAGGGATTATTATATATTCTCTCCAAGTGGATGGTTCTTTTTTTTCCAGGGAGAGGGAGGTTTTTGCTTTATCTCCCTTTCTGTTGGATTTAATGGATTCCATGTTTTAGCTTTTGTTTGATGCAGTTAAGAGGCTGCATTCTTGATGGAACTTGTCTTTAGCAAATGGGTATTTGTATTTTCACTCTGTTGTTGGCTAACCTTCTCTGTAGCAGTTGCAGGTCAGAGCTTAAAGCTTGGTTTTCTTTTCCTTGGATTACTTGTAT | |||||||||
gi|72270095|gb|DT047483.1|DT047483 COT_CO_E10 Fiber and Ovule of Xu-142 Lambda Zap Express Library Gossypium hirsutum cDNA 3' si AAGACTCAAGAGAATTGGGTT EST sequence (targeted fragment marked with yellow): TTTCTCAGGGGAACGGAGCATTTTTTTTCACTTACAAAGGCATTGGGTTACACTACCATTCCAGCTGATGGAGGCAACAACACAACACATTTTCTGAAACTATGCAGTACCATAAAATAAAATCATTTTTTTTATTGGATGGCTAATAATGATATTTAGTACATTAAGGTTTCTTCTGTGGGGAATTGAAAAAGGACTCTAGACTTCCTTCACTTCCACAGCGTCCATTCACTGTGTTTCTCTTCATCCTTACCCTTAGAACCCTTAACTGTGTTCACCTTCAATCTCAAAAGCTGATACAGGGAAAGTCCTAAACAGCCCTGAAGGGGTCTTGAAAGTGATCTTCCCAGGTGGGAGGATCATCCACTGTGGATATCACTCAGTGTGATCCAAACCAAAAGCTCTTGGGTCTTCACCCCAGTCAGCTTCTTGATCTTGCCTTTCTCAACGACAGCGTGACTTCAGTTGCATAGGAAACCAGCTTCCCTATCTTTTCGAACTTGGGGGTGATGCGTCTTCTTTGGTTGAGCCACACGAAACTGTGTCCTTC | |||||||||
gi|109857134|gb|DW486113.1|DW486113 GH_RMIRS_056_F03_011_R Cotton Normalized Library random primed Gossypium hirsutum cDNA, mRNA AAGACTCAAGAGAATTGGGTT EST sequence (targeted fragment marked with yellow): ATCAGGCAGAGGACGAGACAAACAACCCACTTACAAAAAATATTAACAGTCCAGTACATTGGGCCAAAATTAACCCAATTACAGCCCAAAAATTCAAGGCCCAAACGGCCCAAAATACTTTAGAAACAGAAACCCTAGGTTTTCTCCCTCTTGGGCCGCAGCCAAACCCCAGCCTTTAGCACCGTACGACCGCCACGCACGCCTCCGTGCGCCCCACGCCGAGTGCCAGCACACGCTCCGTACCAGTCAGACAAACAGCAGCAGAGCACAATAGCACAAAAAGAAAAGAGAAAAAAATGTTGTATTTTTTCTTATTCGGCCATAAAGCCATCTTTTTTTCAATTGTATTTGGTTCCACGCATACTGAAATACCAAAAGCAACCAAAATTTGAAGGTGATTTCTGACTTAAGTTTCTTGAGTTTTTGAGTTTTCTTTCGGTTTATTTCTTTTTGGTCTTTCGTTTTCGCATTTGAAAGCAGAAAAAAAAAGGAAAGTGAAGTTTTACCTTGTAAATATGCCATCAGATTCCTTCTGTTTCGTTGAAGTCAAGGTATAAGGGGATCTTAAGGCTGAAAGAGAACAACCCCGAGGCTCAAGCATGCTGGTCGCCATTCATGGTAGTGGATCGGCACTTAAGAGGAGAGTTTAGGGTTCGGCTGAGGGAAATGAAATGGGGAGGCTAGGGTTTTATTTTTGGTTCGGACGAATT | |||||||||
gi|84172368|gb|DR461016.1|DR461016 CM092H12 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence AAGACTCAAGAGAATTGGGTT EST sequence (targeted fragment marked with yellow): AGATCTGGAATTCAACTTGAGATGTTGATGGTTCCACTGCATTCCACAAACCCCAGCGCCATGCTCAGCTAGACCTAATCGTTCAAGGAGACGAGTGAGACGTGAAGAAGTTAGTTCTGATGAAGAAAATTCACCTCCCTGTGTTAAGTCTGTGGTTCCTAGCAATGGTGGCACTATAGGTCCTCGCTCACAAAGGGCAAGCAAGACTGCAGCAATGACCAAGATAACAAGAAGTAAAGCTGTAAGGATAGAAGAAGGTTTTCATGAAGACGACGATGAAGATTCAGAAGTAACAGCTGAGGATTCTGATGAATCAGATGAGCTCACCGAATAAAATCACGTCGCTTAGTTTGCATTACCTGAATCATCGTCATATATATACTGTGGTGCATATGTTTCAAGGTTTAGGTTGAGTTAAGCTAGATACGTAAGAATGCAGTACTTATATTATATATGTCGTATCCATGTGTATGATGTCCGTAACCCGTAAGTCGTTACATATATGATGTAGTTGTAAGCATTTTGGGTTAAGCTTTGTGTAGATATTGTTGTAACACAATTGGGGAAACGTATGCTAGTCAAAGCCTATTCTCTTGAATCTTTCATGCAAAAGAAAAAA | |||||||||
gi|164340808|gb|ES840177.1|ES840177 UFL_062_26 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence AAGACTCAAGAGAATTGGGTT EST sequence (targeted fragment marked with yellow): AAAGAATGACCATGATGAGGATTCACCTGGTGGGTGGAACGATTATGACGGCATGGGATCTGACTCCGATTTCGACGATTTCGGACCTTTTAATGTCAAGACCACCAGCAGTGGTTTCTCTATACAATTCTCTTGAGCCTTGTTCTGTATTTGAGGTATAGTGAATGCTTTGAATTATTAAATATTCCGTTTTGTTTTAGGGTATAGTTAAAAAAAGTTAAACCTGAAATTAGGGAGATTAAAATTATGAACCCTGTCTGAACTTGGTGGTTTTATGTATGTTGAAAGTTGATTATGTAAAAAAAAAAAAAAAAAAACTCGAGTGGCAGCCATGATGATGAACCAACAACGTGCAAATGGAGGGATGTATCCACCCATGATGTATGCTCATCAACCATATCCCCAACCAAATTATGGACCTCCACCCATGCATCCACCCCCATCTGAATCTTATGCTCATTACTTCAGTGATGAAAACGCAAACAGCTGTAGTATCATGTATAATTTTCCCCATTTTAGTGCCATTTTCTCCCTTCTTTGCTTTTGGGTTTTTCATTTTAGGGTGGTTTTTTTATACATGCTTTGCGAGGTTCAAGAAAACATTTGCTTATGTTTTTCTTGCCAATGGAAAATGGTTAATTTTTCCCTAAAGTCATTCCCCCAAACGGTCTTTGGGTCACTATGTAGAAAAAAAGTGGAGTTAAAGTTGAAGGATATATAAAGGAGTATATATAGGTGGCTTTCCCAAAAAAAAAAAAAAAAAAAAAAAACTTCAGGAGTATTTTCTGAGGGGGCCGGGGGGCCCTTCGATTTTTCCCCCCCCGGGGGGGGGGACCCAGGGAAAGTGGAACCCCAATTTCCCCCCTAAAAGGGGAGGGCAATTTAAAAATTTCCAGGGGGCCGGCCTGTTTTTACAACCGGCCGGGGAACGGGGGGAAAAAACCCCGGGGGGGTTTACCCCCACACTTTATATCCGCCCTTTTGGGCACGCCAACTTTCCCCCCTCTTTTCGCCCCAAGGGGGGGGTGAAAAATAAACAGAGAAAAAGGGCCCCCGCCACGCCGAATTCGCCCCTCTTCCCCAAACAAATTTTGCCCCCGCCCCCTGAGAAGGGGCGAAAGGGGGAAAATCCCCAATTTTTTTTAAGATGGGAAATAAAGGGGGTTATAAACCTTACGGGGATTTCTAAATGTGGGTTTGGGGGGTTATTTTTAAAAATTCCACACAGCCCCCAGGGGGGCTTATTTTTTCCGGGGCCCCCCCCCTCGCCCCCCCCTCCCAGGGTTGGTGGTTTGTGAGAAGATTAATTATAAACCACCGCCCCCACAATCACAACATAATTTTTTGGAAAGAAGGGGTGTTTTTTTCTTTTTGTTTTCTTTTAAAAAAAAAGACCCCCTCTCCCCC | |||||||||